Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47028 * 2 1 4 4 N 1.36884 * 125.23965 * 265.02134 * 3 2 1 5 5 H 0.97003 * 125.32161 * 359.97438 * 4 3 2 6 6 N 1.40032 * 109.37368 * 179.97438 * 4 3 2 7 7 H 0.97000 * 126.33512 * 180.02562 * 6 4 3 8 8 C 1.38427 * 107.33959 * 0.02562 * 6 4 3 9 9 N 1.30899 * 126.85303 * 179.97438 * 8 6 4 10 10 C 1.46494 * 119.99607 * 359.97438 * 9 8 6 11 11 H 1.09001 * 109.47516 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47609 * 119.99820 * 10 9 8 13 13 C 1.53001 * 109.46869 * 239.99562 * 10 9 8 14 14 C 1.50701 * 109.47165 * 65.00072 * 13 10 9 15 15 H 1.08005 * 119.99897 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00141 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99639 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99962 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47459 * 60.00048 * 18 16 14 20 20 H 1.48499 * 109.46991 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46964 * 300.00053 * 18 16 14 22 22 C 1.34283 * 125.24569 * 84.71745 * 3 2 1 23 23 C 1.50702 * 126.26653 * 359.97438 * 22 3 2 24 24 H 1.08998 * 109.47097 * 60.00441 * 1 2 3 25 25 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46739 * 300.00185 * 1 2 3 27 27 H 1.08996 * 109.47547 * 239.99834 * 2 1 3 28 28 H 1.08998 * 109.47097 * 119.99559 * 2 1 3 29 29 H 1.08997 * 109.47318 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46385 * 299.99947 * 12 10 9 31 31 H 1.08992 * 109.46866 * 59.99429 * 12 10 9 32 32 H 1.09004 * 109.47533 * 184.99722 * 13 10 9 33 33 H 1.08996 * 109.47463 * 304.99699 * 13 10 9 34 34 H 0.97002 * 119.99440 * 179.97438 * 17 16 14 35 35 H 1.09005 * 109.46908 * 89.99719 * 23 22 3 36 36 H 1.08994 * 109.47226 * 209.99941 * 23 22 3 37 37 H 1.08997 * 109.46772 * 330.00602 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3871 2.1332 -1.1138 5 1 2.3546 1.8023 -2.0250 6 7 2.8042 3.4144 -0.7324 7 1 3.1078 4.1200 -1.3248 8 6 2.7030 3.4879 0.6462 9 7 2.9968 4.5161 1.4012 10 6 3.4910 5.7538 0.7931 11 1 3.5479 5.6300 -0.2883 12 6 2.5363 6.9022 1.1259 13 6 4.8827 6.0720 1.3434 14 6 5.8508 5.0011 0.9109 15 1 5.5077 4.1758 0.3045 16 6 7.1747 5.0748 1.2893 17 7 7.5924 6.0795 2.0281 18 14 8.3745 3.7471 0.7537 19 1 8.4276 3.6968 -0.7294 20 1 9.7253 4.0559 1.2877 21 1 7.9242 2.4325 1.2777 22 6 2.1954 2.1851 1.0920 23 6 1.9116 1.7786 2.5151 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9038 7.8230 0.6730 30 1 1.5449 6.6755 0.7338 31 1 2.4799 7.0259 2.2073 32 1 5.2134 7.0371 0.9596 33 1 4.8435 6.1081 2.4321 34 1 8.5237 6.1312 2.2945 35 1 2.8078 1.3391 2.9531 36 1 1.6179 2.6556 3.0918 37 1 1.1038 1.0469 2.5297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389888703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = 71.087867 kcal Electronic energy + Delta-G solvation = -17038.221888 eV Core-core repulsion = 14431.113371 eV Total energy + Delta-G solvation = -2607.108516 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23857 -35.86378 -34.15007 -32.65840 -31.72984 -30.32513 -28.13360 -27.15700 -26.02866 -24.00922 -22.96735 -20.72740 -18.84110 -18.46192 -17.86948 -16.12416 -15.32811 -14.89444 -14.69026 -14.45033 -14.06303 -13.40958 -12.76008 -12.64225 -12.35952 -12.16562 -12.08168 -11.90968 -11.62953 -11.42826 -11.31663 -11.15735 -10.90859 -10.60620 -10.44684 -10.31582 -9.95567 -9.21078 -8.90544 -8.49061 -8.35868 -8.11708 -6.29863 -5.85741 -3.84797 2.19856 2.51507 3.38007 3.42497 3.45840 3.87565 4.49791 4.56356 4.66231 4.92457 5.14738 5.23759 5.49937 5.52719 5.63610 5.70923 5.82157 6.01392 6.05999 6.19850 6.25181 6.30812 6.32959 6.44418 6.60367 6.73197 6.78214 7.01528 7.23487 7.32468 7.72972 7.85270 7.98044 8.15411 8.38620 8.59339 9.19041 9.32021 9.76094 11.26003 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.007402 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.113284 B = 3781.978205 C = 4445.021685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C 0.143 3.857 4 N -0.524 5.524 5 H 0.426 0.574 6 N -0.561 5.561 7 H 0.432 0.568 8 C 0.412 3.588 9 N -0.553 5.553 10 C 0.089 3.911 11 H 0.016 0.984 12 C -0.134 4.134 13 C 0.033 3.967 14 C -0.499 4.499 15 H 0.047 0.953 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.213 4.213 23 C -0.060 4.060 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.025 0.975 34 H 0.258 0.742 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 -11.543 -6.157 19.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C 0.031 3.969 4 N -0.245 5.245 5 H 0.268 0.732 6 N -0.302 5.302 7 H 0.278 0.722 8 C 0.141 3.859 9 N -0.284 5.284 10 C -0.022 4.022 11 H 0.034 0.966 12 C -0.192 4.192 13 C -0.004 4.004 14 C -0.538 4.538 15 H 0.065 0.935 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.227 4.227 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.983 -11.040 -5.383 18.612 hybrid contribution 1.294 -0.374 -2.058 2.459 sum -12.689 -11.414 -7.441 18.619 Atomic orbital electron populations 1.21744 0.94065 1.01850 1.02776 1.20241 0.96372 0.89552 1.03813 1.20112 0.97560 0.93333 0.85941 1.43253 1.69205 1.05029 1.07044 0.73181 1.45426 1.72818 1.04467 1.07519 0.72234 1.21379 0.92307 0.94640 0.77567 1.72908 1.26113 1.00663 1.28711 1.21465 0.96962 0.89068 0.94662 0.96634 1.21797 0.97746 0.97807 1.01865 1.19144 0.88066 0.96044 0.97174 1.21092 0.93222 1.07961 1.31494 0.93483 1.24958 0.98328 0.95626 0.95552 1.69956 1.15898 1.30640 1.37340 0.86740 0.80431 0.82745 0.78516 1.20755 1.21327 1.20393 1.19784 1.15394 0.92329 0.95224 1.19901 1.00029 1.00779 0.91041 0.92730 0.92072 0.91675 0.90899 0.88899 0.93205 0.94764 0.92415 0.96605 0.95640 0.93200 0.92438 0.91286 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.06 -0.53 5.95 -27.88 -0.17 -0.70 16 3 C 0.14 1.90 6.40 -81.73 -0.52 1.38 16 4 N -0.52 -6.95 7.35 33.63 0.25 -6.70 16 5 H 0.43 4.02 8.96 -182.65 -1.64 2.38 16 6 N -0.56 -9.64 7.27 32.40 0.24 -9.40 16 7 H 0.43 7.10 7.44 -182.65 -1.36 5.74 16 8 C 0.41 8.38 8.02 -153.74 -1.23 7.15 16 9 N -0.55 -12.90 9.97 -52.13 -0.52 -13.42 16 10 C 0.09 2.08 2.92 -67.93 -0.20 1.88 16 11 H 0.02 0.35 6.21 -51.93 -0.32 0.03 16 12 C -0.13 -2.70 9.52 37.16 0.35 -2.35 16 13 C 0.03 0.93 4.65 -27.88 -0.13 0.80 16 14 C -0.50 -15.02 8.84 -34.44 -0.30 -15.32 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -28.40 13.29 55.43 0.74 -27.66 16 18 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.21 -3.59 6.31 -102.58 -0.65 -4.23 16 23 C -0.06 -0.88 10.02 36.01 0.36 -0.52 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.54 7.63 -51.93 -0.40 0.14 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.58 7.31 -51.93 -0.38 0.20 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -35.65 309.66 -10.15 -45.79 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.28 Total: -0.24 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.22 Total: -11.04 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.70 Total: -57.18 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.65 -10.15 -45.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389888703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.880 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds