Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47028 * 2 1 4 4 N 1.36884 * 125.23965 * 265.02134 * 3 2 1 5 5 H 0.97003 * 125.32161 * 359.97438 * 4 3 2 6 6 N 1.40032 * 109.37368 * 179.97438 * 4 3 2 7 7 H 0.97000 * 126.33512 * 180.02562 * 6 4 3 8 8 C 1.38427 * 107.33959 * 0.02562 * 6 4 3 9 9 N 1.30899 * 126.85303 * 179.97438 * 8 6 4 10 10 C 1.46494 * 119.99607 * 359.97438 * 9 8 6 11 11 H 1.09001 * 109.47516 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47609 * 119.99820 * 10 9 8 13 13 C 1.53001 * 109.46869 * 239.99562 * 10 9 8 14 14 C 1.50701 * 109.47165 * 65.00072 * 13 10 9 15 15 H 1.08005 * 119.99897 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00141 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99639 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99962 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47459 * 60.00048 * 18 16 14 20 20 H 1.48499 * 109.46991 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46964 * 300.00053 * 18 16 14 22 22 C 1.34283 * 125.24569 * 84.71745 * 3 2 1 23 23 C 1.50702 * 126.26653 * 359.97438 * 22 3 2 24 24 H 1.08998 * 109.47097 * 60.00441 * 1 2 3 25 25 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46739 * 300.00185 * 1 2 3 27 27 H 1.08996 * 109.47547 * 239.99834 * 2 1 3 28 28 H 1.08998 * 109.47097 * 119.99559 * 2 1 3 29 29 H 1.08997 * 109.47318 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46385 * 299.99947 * 12 10 9 31 31 H 1.08992 * 109.46866 * 59.99429 * 12 10 9 32 32 H 1.09004 * 109.47533 * 184.99722 * 13 10 9 33 33 H 1.08996 * 109.47463 * 304.99699 * 13 10 9 34 34 H 0.97002 * 119.99440 * 179.97438 * 17 16 14 35 35 H 1.09005 * 109.46908 * 89.99719 * 23 22 3 36 36 H 1.08994 * 109.47226 * 209.99941 * 23 22 3 37 37 H 1.08997 * 109.46772 * 330.00602 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3871 2.1332 -1.1138 5 1 2.3546 1.8023 -2.0250 6 7 2.8042 3.4144 -0.7324 7 1 3.1078 4.1200 -1.3248 8 6 2.7030 3.4879 0.6462 9 7 2.9968 4.5161 1.4012 10 6 3.4910 5.7538 0.7931 11 1 3.5479 5.6300 -0.2883 12 6 2.5363 6.9022 1.1259 13 6 4.8827 6.0720 1.3434 14 6 5.8508 5.0011 0.9109 15 1 5.5077 4.1758 0.3045 16 6 7.1747 5.0748 1.2893 17 7 7.5924 6.0795 2.0281 18 14 8.3745 3.7471 0.7537 19 1 8.4276 3.6968 -0.7294 20 1 9.7253 4.0559 1.2877 21 1 7.9242 2.4325 1.2777 22 6 2.1954 2.1851 1.0920 23 6 1.9116 1.7786 2.5151 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9038 7.8230 0.6730 30 1 1.5449 6.6755 0.7338 31 1 2.4799 7.0259 2.2073 32 1 5.2134 7.0371 0.9596 33 1 4.8435 6.1081 2.4321 34 1 8.5237 6.1312 2.2945 35 1 2.8078 1.3391 2.9531 36 1 1.6179 2.6556 3.0918 37 1 1.1038 1.0469 2.5297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389888703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = 46.350432 kcal Electronic energy + Delta-G solvation = -17039.294583 eV Core-core repulsion = 14431.113371 eV Total energy + Delta-G solvation = -2608.181212 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52735 -37.54518 -35.30834 -34.62972 -33.25272 -31.53768 -29.62754 -29.18808 -27.24226 -25.23435 -24.74296 -22.27608 -20.16807 -19.80744 -19.31624 -18.45980 -16.71899 -16.57970 -16.16308 -15.82639 -15.07172 -14.80547 -14.31050 -14.19626 -13.61479 -13.47652 -13.32396 -13.29137 -13.23318 -13.00501 -12.72615 -12.57890 -12.54639 -12.39636 -12.05886 -11.76255 -11.57852 -11.28256 -10.85450 -10.60603 -9.86641 -9.80637 -8.18888 -7.71071 -6.26515 0.99218 1.28971 1.29917 1.35015 1.42639 2.37498 2.39822 3.13384 3.31366 3.53405 4.07995 4.24208 4.28865 4.47255 4.53202 4.61621 4.70224 4.85733 4.95027 5.04924 5.07156 5.11519 5.16720 5.23033 5.26833 5.30750 5.36306 5.51288 5.53093 5.61106 5.65300 5.83498 6.04590 6.28004 6.53428 6.85265 7.15456 7.38698 7.79507 8.93907 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.007402 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.113284 B = 3781.978205 C = 4445.021685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C 0.180 3.820 4 N -0.504 5.504 5 H 0.447 0.553 6 N -0.565 5.565 7 H 0.433 0.567 8 C 0.404 3.596 9 N -0.610 5.610 10 C 0.097 3.903 11 H 0.019 0.981 12 C -0.125 4.125 13 C 0.041 3.959 14 C -0.512 4.512 15 H 0.045 0.955 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.270 4.270 23 C -0.051 4.051 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.045 0.955 32 H -0.007 1.007 33 H -0.016 1.016 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -14.766 -8.202 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C 0.065 3.935 4 N -0.226 5.226 5 H 0.294 0.706 6 N -0.305 5.305 7 H 0.279 0.721 8 C 0.134 3.866 9 N -0.345 5.345 10 C -0.014 4.014 11 H 0.037 0.963 12 C -0.183 4.183 13 C 0.003 3.997 14 C -0.550 4.550 15 H 0.063 0.937 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.786 3.214 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.200 1.200 22 C -0.284 4.284 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.002 0.998 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.857 -14.277 -7.499 21.927 hybrid contribution 1.482 0.516 -1.539 2.198 sum -13.376 -13.761 -9.037 21.212 Atomic orbital electron populations 1.21731 0.92661 1.03371 1.02349 1.20497 0.97302 0.86158 1.05807 1.20867 0.93570 0.94626 0.84487 1.43493 1.67387 1.03270 1.08480 0.70602 1.45456 1.71812 1.06170 1.07033 0.72061 1.21959 0.90833 0.95112 0.78668 1.72905 1.30389 1.01365 1.29812 1.21201 0.94762 0.91043 0.94356 0.96265 1.21703 0.98175 0.97174 1.01250 1.18997 0.91479 0.94732 0.94491 1.21337 0.93968 1.08176 1.31540 0.93673 1.25920 1.00429 0.98179 0.95489 1.70103 1.16522 1.32637 1.38364 0.85568 0.77833 0.79224 0.78769 1.19156 1.20352 1.20019 1.20051 1.19366 0.91780 0.97213 1.19830 1.00723 1.00521 0.89785 0.92723 0.89594 0.92647 0.88081 0.87765 0.92274 0.92727 0.93584 0.98908 0.99769 0.92936 0.93553 0.93769 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.06 -0.75 5.95 29.85 0.18 -0.57 16 3 C 0.18 4.22 6.40 40.87 0.26 4.49 16 4 N -0.50 -11.80 7.35 -47.52 -0.35 -12.15 16 5 H 0.45 6.61 8.96 -213.36 -1.91 4.70 16 6 N -0.57 -18.80 7.27 -51.42 -0.37 -19.18 16 7 H 0.43 13.93 7.44 -213.36 -1.59 12.35 16 8 C 0.40 16.49 8.02 135.71 1.09 17.57 16 9 N -0.61 -29.54 9.97 -318.84 -3.18 -32.72 16 10 C 0.10 4.73 2.92 44.99 0.13 4.86 16 11 H 0.02 0.89 6.21 -2.39 -0.01 0.88 16 12 C -0.13 -5.19 9.52 71.98 0.69 -4.50 16 13 C 0.04 2.41 4.65 29.85 0.14 2.55 16 14 C -0.51 -31.71 8.84 25.60 0.23 -31.48 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 16 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 17 N -0.94 -60.78 13.29 21.45 0.28 -60.49 16 18 Si 0.96 47.57 29.54 68.60 2.03 49.59 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 22 C -0.27 -8.81 6.31 -18.54 -0.12 -8.92 16 23 C -0.05 -1.47 10.02 71.24 0.71 -0.76 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.71 7.63 -2.38 -0.02 0.70 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 1.23 7.94 -2.39 -0.02 1.21 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 34 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.80 7.31 -2.39 -0.02 1.78 16 Total: -1.00 -80.88 309.66 0.45 -80.43 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.44 Total: 11.82 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.48 Total: -17.30 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -3.62 Total: -124.54 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -80.88 0.45 -80.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389888703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.777 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds