Wall clock time and date at job start Mon Mar 30 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47209 * 2 1 4 4 C 1.50700 * 109.46839 * 119.99723 * 2 1 3 5 5 H 1.08001 * 120.00132 * 120.00223 * 4 2 1 6 6 C 1.37884 * 119.99977 * 299.99972 * 4 2 1 7 7 N 1.31512 * 119.99897 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99923 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47682 * 89.99960 * 8 6 4 10 10 H 1.48508 * 109.47125 * 209.99923 * 8 6 4 11 11 H 1.48501 * 109.47370 * 329.99480 * 8 6 4 12 12 N 1.46900 * 109.47288 * 239.99612 * 2 1 3 13 13 C 1.46902 * 110.99860 * 97.09632 * 12 2 1 14 14 C 1.52996 * 109.47147 * 302.45156 * 13 12 2 15 15 C 1.53000 * 109.47300 * 62.45001 * 13 12 2 16 16 C 1.50699 * 109.46987 * 182.45335 * 13 12 2 17 17 C 1.39872 * 126.03929 * 0.02562 * 16 13 12 18 18 N 1.30842 * 108.20122 * 179.97438 * 17 16 13 19 19 N 1.40086 * 108.20567 * 0.02562 * 18 17 16 20 20 C 1.46494 * 126.03635 * 180.02562 * 19 18 17 21 21 C 1.34949 * 107.92460 * 359.75600 * 19 18 17 22 22 H 1.08994 * 109.47649 * 293.89685 * 1 2 3 23 23 H 1.09009 * 109.47026 * 53.89280 * 1 2 3 24 24 H 1.08997 * 109.47337 * 173.89119 * 1 2 3 25 25 H 0.97006 * 119.99906 * 180.02562 * 7 6 4 26 26 H 1.00896 * 111.00021 * 333.14489 * 12 2 1 27 27 H 1.09001 * 109.47246 * 295.66282 * 14 13 12 28 28 H 1.09003 * 109.47417 * 175.66306 * 14 13 12 29 29 H 1.09000 * 109.47234 * 55.65632 * 14 13 12 30 30 H 1.09000 * 109.47082 * 294.12521 * 15 13 12 31 31 H 1.09005 * 109.46734 * 54.11949 * 15 13 12 32 32 H 1.08999 * 109.47255 * 174.11861 * 15 13 12 33 33 H 1.07998 * 125.90210 * 359.95945 * 17 16 13 34 34 H 1.09003 * 109.47240 * 89.97149 * 20 19 18 35 35 H 1.08998 * 109.47461 * 209.97406 * 20 19 18 36 36 H 1.09001 * 109.47337 * 329.97549 * 20 19 18 37 37 H 1.07995 * 126.12872 * 180.24202 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3223 -1.1193 4.0080 9 1 3.6302 -0.5439 4.4120 10 1 1.3441 -0.9487 5.1124 11 1 2.4877 -2.5652 3.7124 12 7 2.0197 -0.6926 -1.1994 13 6 2.3549 0.2661 -2.2608 14 6 1.1239 1.1125 -2.5910 15 6 3.4880 1.1777 -1.7855 16 6 2.7952 -0.4821 -3.4927 17 6 2.8782 -1.8720 -3.6255 18 7 3.2973 -2.1426 -4.8351 19 7 3.4951 -0.9316 -5.5109 20 6 3.9607 -0.7813 -6.8918 21 6 3.1752 0.0719 -4.6673 22 1 -0.3634 0.4163 0.9395 23 1 -0.3633 0.6057 -0.8303 24 1 -0.3634 -1.0218 -0.1094 25 1 0.7094 1.1621 3.4844 26 1 1.3479 -1.3716 -1.5244 27 1 0.3428 0.4729 -3.0022 28 1 1.3924 1.8743 -3.3229 29 1 0.7593 1.5931 -1.6832 30 1 3.1355 1.7948 -0.9591 31 1 4.3283 0.5689 -1.4517 32 1 3.8076 1.8187 -2.6072 33 1 2.6380 -2.5967 -2.8617 34 1 3.1036 -0.7703 -7.5651 35 1 4.5117 0.1540 -6.9897 36 1 4.6133 -1.6159 -7.1481 37 1 3.2171 1.1280 -4.8891 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389965759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:58 Heat of formation + Delta-G solvation = 83.986839 kcal Electronic energy + Delta-G solvation = -17306.989570 eV Core-core repulsion = 14700.440395 eV Total energy + Delta-G solvation = -2606.549175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99208 -37.43670 -33.62143 -32.68242 -30.97671 -28.82881 -27.45957 -26.76784 -26.24718 -24.85488 -21.82672 -20.71510 -19.86351 -18.44209 -17.06749 -15.97493 -15.28521 -14.68500 -14.56983 -14.02755 -13.74281 -13.36585 -12.83938 -12.68735 -12.64336 -12.38694 -12.10545 -11.76281 -11.50353 -11.31624 -10.95537 -10.79184 -10.70628 -10.56843 -10.26291 -10.07867 -9.86669 -9.59481 -9.14443 -8.91710 -8.23819 -8.03362 -7.11832 -5.89540 -3.91543 2.12725 2.72654 3.18182 3.38333 3.44479 3.49242 4.50980 4.61864 5.00200 5.07018 5.28233 5.31428 5.35293 5.41875 5.64968 5.79214 5.84783 6.03327 6.14814 6.20114 6.42690 6.53568 6.57382 6.74181 6.87359 6.96569 6.99366 7.02565 7.22052 7.23527 7.49983 7.84705 7.96203 8.02826 8.41414 8.69286 8.73624 9.16329 9.73243 11.16801 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042207 B = 0.005864 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.232768 B = 4773.625890 C = 5021.026273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.209 3.791 3 H 0.039 0.961 4 C -0.486 4.486 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.275 1.275 12 N -0.672 5.672 13 C 0.187 3.813 14 C -0.176 4.176 15 C -0.128 4.128 16 C -0.201 4.201 17 C 0.070 3.930 18 N -0.310 5.310 19 N -0.387 5.387 20 C 0.107 3.893 21 C 0.044 3.956 22 H 0.088 0.912 23 H 0.015 0.985 24 H 0.024 0.976 25 H 0.258 0.742 26 H 0.323 0.677 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.187 0.813 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 0.966 -15.236 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.200 1.200 12 N -0.301 5.301 13 C 0.094 3.906 14 C -0.235 4.235 15 C -0.185 4.185 16 C -0.213 4.213 17 C -0.116 4.116 18 N -0.132 5.132 19 N -0.170 5.170 20 C -0.035 4.035 21 C -0.101 4.101 22 H 0.107 0.893 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.204 0.796 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.137 0.124 -15.843 16.374 hybrid contribution -0.876 0.578 1.106 1.525 sum 3.261 0.702 -14.736 15.109 Atomic orbital electron populations 1.22623 1.00594 0.98295 1.01877 1.19223 0.89609 0.94617 0.86359 0.94312 1.21238 1.29516 1.12177 0.89605 0.92020 1.24937 0.95543 0.95302 0.98915 1.69878 1.37667 1.23376 1.23104 0.86562 0.78362 0.80105 0.82713 1.20932 1.21587 1.20001 1.60922 1.48716 1.15656 1.04827 1.19076 0.93383 0.90689 0.87500 1.22782 0.98908 0.99969 1.01829 1.21838 0.98332 0.98361 1.00018 1.20189 1.11517 0.93566 0.96029 1.23837 0.97751 0.96248 0.93787 1.77315 1.23959 1.04287 1.07632 1.48357 1.52938 1.04145 1.11575 1.21715 1.00111 1.03414 0.78264 1.22118 1.02464 0.94534 0.91027 0.89311 0.96600 0.95690 0.93263 0.85976 0.93465 0.93906 0.90861 0.91807 0.92057 0.94147 0.79633 0.91352 0.89954 0.89706 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.63 37.16 0.32 -3.80 16 2 C 0.21 5.07 1.81 -68.87 -0.12 4.95 16 3 H 0.04 1.02 5.20 -51.93 -0.27 0.75 16 4 C -0.49 -13.32 8.84 -34.44 -0.30 -13.62 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 7 N -0.90 -25.57 11.29 55.43 0.63 -24.95 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.67 -13.86 5.44 -95.42 -0.52 -14.38 16 13 C 0.19 3.30 0.85 -132.75 -0.11 3.18 16 14 C -0.18 -2.93 7.19 37.16 0.27 -2.67 16 15 C -0.13 -2.27 8.22 37.16 0.31 -1.96 16 16 C -0.20 -3.26 4.77 -105.05 -0.50 -3.76 16 17 C 0.07 1.16 11.08 -17.36 -0.19 0.97 16 18 N -0.31 -5.07 12.58 30.63 0.39 -4.68 16 19 N -0.39 -5.24 4.01 -68.17 -0.27 -5.51 16 20 C 0.11 0.90 11.47 59.84 0.69 1.59 16 21 C 0.04 0.60 10.77 -17.22 -0.19 0.42 16 22 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 23 H 0.02 0.33 5.51 -51.92 -0.29 0.04 16 24 H 0.02 0.56 8.00 -51.93 -0.42 0.14 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.32 6.42 7.44 -39.29 -0.29 6.13 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.07 1.37 5.16 -51.93 -0.27 1.10 16 30 H 0.06 1.24 6.33 -51.93 -0.33 0.92 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.59 7.84 -51.93 -0.41 0.18 16 33 H 0.19 2.97 7.55 -52.49 -0.40 2.58 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -30.36 295.04 -5.77 -36.12 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.47 Total: 5.70 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 0.06 Total: -13.35 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.22 Total: -49.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.36 -5.77 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389965759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.111 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds