Wall clock time and date at job start Mon Mar 30 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47324 * 2 1 4 4 N 1.46900 * 109.46797 * 119.99488 * 2 1 3 5 5 C 1.46901 * 111.00003 * 170.15610 * 4 2 1 6 6 C 1.50690 * 109.47327 * 293.95711 * 5 4 2 7 7 H 1.08005 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00245 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47173 * 59.99846 * 10 8 6 12 12 H 1.48497 * 109.47298 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46763 * 300.00199 * 10 8 6 14 14 C 1.46905 * 111.00499 * 294.11239 * 4 2 1 15 15 C 1.50695 * 109.47030 * 164.04409 * 14 4 2 16 16 N 1.30506 * 125.64755 * 95.30268 * 15 14 4 17 17 C 1.34123 * 109.25525 * 179.97438 * 16 15 14 18 18 C 1.34667 * 108.02339 * 359.97438 * 17 16 15 19 19 N 1.35041 * 125.65400 * 274.98654 * 15 14 4 20 20 C 1.46498 * 126.39635 * 0.02562 * 19 15 14 21 21 H 1.09008 * 109.47244 * 305.55267 * 1 2 3 22 22 H 1.09003 * 109.47042 * 65.54666 * 1 2 3 23 23 H 1.08998 * 109.47698 * 185.54918 * 1 2 3 24 24 H 1.08993 * 109.47181 * 239.99497 * 2 1 3 25 25 H 1.09001 * 109.47233 * 184.65872 * 3 2 1 26 26 H 1.09003 * 109.47095 * 304.66213 * 3 2 1 27 27 H 1.08999 * 109.47422 * 64.65583 * 3 2 1 28 28 H 1.09006 * 109.46864 * 53.95829 * 5 4 2 29 29 H 1.09004 * 109.47375 * 173.95538 * 5 4 2 30 30 H 0.97006 * 120.00269 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47186 * 284.05113 * 14 4 2 32 32 H 1.09000 * 109.46272 * 44.04703 * 14 4 2 33 33 H 1.08004 * 125.98911 * 180.02562 * 17 16 15 34 34 H 1.08000 * 126.59422 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47821 * 94.88552 * 20 19 15 36 36 H 1.08998 * 109.47198 * 214.88916 * 20 19 15 37 37 H 1.08997 * 109.46992 * 334.88731 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4690 -0.9185 1.1221 6 6 3.7679 -1.8834 0.0040 7 1 2.9618 -2.2887 -0.5896 8 6 5.0706 -2.2491 -0.2613 9 7 6.0522 -1.7560 0.4618 10 14 5.4413 -3.4448 -1.6478 11 1 4.9590 -2.8776 -2.9328 12 1 6.9065 -3.6734 -1.7260 13 1 4.7528 -4.7343 -1.3866 14 6 1.6668 0.0502 2.4170 15 6 1.8237 -0.8483 3.6166 16 7 2.8785 -0.9179 4.3820 17 6 2.6640 -1.8217 5.3495 18 6 1.4294 -2.3312 5.1775 19 7 0.8940 -1.7106 4.0812 20 6 -0.4377 -1.9408 3.5158 21 1 -0.3634 0.5976 0.8361 22 1 -0.3633 0.4254 -0.9355 23 1 -0.3634 -1.0228 0.0994 24 1 1.8933 -0.5139 -0.8899 25 1 3.1268 1.4436 -0.0835 26 1 1.6101 1.9799 -0.8453 27 1 1.7464 1.9317 0.9287 28 1 3.9746 0.0280 0.9302 29 1 3.8228 -1.3346 2.0655 30 1 6.9687 -2.0135 0.2754 31 1 2.3254 0.9125 2.5202 32 1 0.6329 0.3886 2.3493 33 1 3.3593 -2.0928 6.1302 34 1 0.9519 -3.0823 5.7893 35 1 -0.4021 -2.7930 2.8371 36 1 -1.1435 -2.1464 4.3205 37 1 -0.7584 -1.0541 2.9689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535072650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:24 Heat of formation + Delta-G solvation = 44.402723 kcal Electronic energy + Delta-G solvation = -17587.609020 eV Core-core repulsion = 14979.343349 eV Total energy + Delta-G solvation = -2608.265671 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.88004 -39.27163 -34.92759 -34.73001 -32.98693 -31.09715 -28.84470 -27.98471 -27.64665 -26.17386 -23.99706 -22.16072 -21.28694 -19.98811 -18.33180 -17.97464 -16.84048 -16.77505 -16.08517 -15.71262 -15.48024 -14.92475 -14.57323 -14.35331 -14.01726 -13.81940 -13.63937 -13.52302 -13.19344 -13.08627 -12.75646 -12.67255 -12.54845 -12.33865 -12.02537 -11.71078 -11.47323 -11.17606 -10.77735 -10.58153 -10.39032 -9.24923 -8.95979 -8.15625 -6.25975 1.19833 1.37629 1.41732 1.49349 2.08547 2.25787 2.41188 3.16017 3.35941 3.77366 3.98218 4.05894 4.15278 4.31270 4.36448 4.47722 4.56869 4.61936 4.65370 4.77899 4.81890 4.87644 4.90980 5.04527 5.13571 5.29880 5.33313 5.46996 5.52240 5.57259 5.70065 5.95934 6.12248 6.33229 6.46560 6.65737 6.91417 7.34266 7.42459 8.95123 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.008926 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.039733 B = 3136.302696 C = 3857.460965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.074 3.926 3 C -0.175 4.175 4 N -0.526 5.526 5 C 0.212 3.788 6 C -0.518 4.518 7 H 0.063 0.937 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.138 3.862 15 C 0.206 3.794 16 N -0.540 5.540 17 C -0.069 4.069 18 C -0.048 4.048 19 N -0.449 5.449 20 C 0.071 3.929 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.060 0.940 28 H -0.039 1.039 29 H 0.003 0.997 30 H 0.261 0.739 31 H 0.037 0.963 32 H 0.116 0.884 33 H 0.176 0.824 34 H 0.214 0.786 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 1.250 4.285 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.034 4.034 3 C -0.234 4.234 4 N -0.250 5.250 5 C 0.086 3.914 6 C -0.557 4.557 7 H 0.081 0.919 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.195 1.195 14 C 0.009 3.991 15 C -0.057 4.057 16 N -0.260 5.260 17 C -0.217 4.217 18 C -0.182 4.182 19 N -0.131 5.131 20 C -0.070 4.070 21 H 0.084 0.916 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.079 0.921 28 H -0.021 1.021 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.193 0.807 34 H 0.231 0.769 35 H 0.095 0.905 36 H 0.132 0.868 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.244 1.223 4.156 16.812 hybrid contribution 0.976 -0.294 -0.340 1.074 sum -15.269 0.929 3.816 15.766 Atomic orbital electron populations 1.21808 0.92007 1.02359 1.02582 1.21730 0.96701 0.91986 0.92987 1.22367 1.00129 0.98250 1.02618 1.62269 1.15957 1.45987 1.00813 1.19305 0.82931 0.93359 0.95825 1.21434 0.92277 1.26181 1.15793 0.91919 1.25948 0.96165 0.98518 0.99394 1.70145 0.99868 1.45864 1.41648 0.85478 0.76835 0.79154 0.79381 1.18814 1.21113 1.19520 1.20356 1.02023 0.91429 0.85290 1.23212 0.86117 0.97549 0.98838 1.70194 1.25616 1.22750 1.07448 1.22664 0.97821 0.99950 1.01268 1.23172 0.96779 1.04050 0.94226 1.45450 1.15153 1.29978 1.22526 1.22290 0.79524 1.04285 1.00908 0.91589 0.90676 0.92088 0.91643 0.95820 0.90248 0.92078 1.02127 0.97837 0.93025 0.94475 0.86638 0.80692 0.76906 0.90548 0.86813 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.02 71.98 0.65 -2.54 16 2 C 0.07 2.67 2.78 44.91 0.12 2.80 16 3 C -0.17 -5.94 8.54 71.98 0.61 -5.32 16 4 N -0.53 -22.48 4.39 -880.08 -3.87 -26.35 16 5 C 0.21 11.96 4.45 85.55 0.38 12.34 16 6 C -0.52 -30.53 8.37 25.60 0.21 -30.32 16 7 H 0.06 3.56 7.18 -2.91 -0.02 3.54 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -59.98 13.29 21.45 0.28 -59.69 16 10 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 C 0.14 5.15 3.94 85.55 0.34 5.48 16 15 C 0.21 8.16 6.65 138.13 0.92 9.08 16 16 N -0.54 -24.54 10.67 -188.14 -2.01 -26.54 16 17 C -0.07 -2.55 11.87 83.52 0.99 -1.56 16 18 C -0.05 -1.40 11.58 83.09 0.96 -0.44 16 19 N -0.45 -13.73 3.15 -537.62 -1.69 -15.42 16 20 C 0.07 1.37 11.03 127.77 1.41 2.78 16 21 H 0.07 1.34 6.52 -2.38 -0.02 1.33 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 2.74 6.65 -2.39 -0.02 2.72 16 25 H 0.02 0.97 6.77 -2.39 -0.02 0.95 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.88 6.42 -2.39 -0.02 1.86 16 28 H -0.04 -2.41 6.48 -2.38 -0.02 -2.42 16 29 H 0.00 0.22 6.81 -2.39 -0.02 0.21 16 30 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 31 H 0.04 1.53 7.04 -2.39 -0.02 1.51 16 32 H 0.12 3.23 5.05 -2.39 -0.01 3.21 16 33 H 0.18 5.53 8.06 -2.91 -0.02 5.51 16 34 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.62 7.01 -2.39 -0.02 1.60 16 Total: -1.00 -78.73 297.10 2.85 -75.88 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.05 Total: 11.39 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 7.06 Total: -7.40 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -7.28 Total: -128.01 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.73 2.85 -75.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535072650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.279 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds