Wall clock time and date at job start Mon Mar 30 2020 04:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47311 * 2 1 4 4 C 1.46900 * 111.00590 * 160.27898 * 3 2 1 5 5 C 1.53000 * 109.47126 * 288.39847 * 4 3 2 6 6 C 1.46898 * 111.00043 * 284.23609 * 3 2 1 7 7 C 1.50700 * 109.47454 * 169.99406 * 6 3 2 8 8 N 1.30319 * 125.97793 * 270.37654 * 7 6 3 9 9 N 1.39883 * 109.22916 * 180.12383 * 8 7 6 10 10 C 1.46505 * 125.67306 * 179.80746 * 9 8 7 11 11 C 1.34501 * 108.64853 * 359.54650 * 9 8 7 12 12 C 1.39279 * 107.18700 * 0.25946 * 11 9 8 13 13 C 1.41600 * 126.55818 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00152 * 180.02562 * 13 12 11 15 15 C 1.39692 * 119.99729 * 0.02562 * 13 12 11 16 16 N 1.31030 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99975 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46933 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46969 * 120.00119 * 17 15 13 20 20 H 1.48498 * 109.47046 * 240.00368 * 17 15 13 21 21 H 1.09007 * 109.46997 * 185.51978 * 1 2 3 22 22 H 1.09002 * 109.46924 * 305.51401 * 1 2 3 23 23 H 1.08999 * 109.47226 * 65.51960 * 1 2 3 24 24 H 1.08997 * 109.47439 * 239.99745 * 2 1 3 25 25 H 1.09005 * 109.47633 * 119.99800 * 2 1 3 26 26 H 1.09002 * 109.46571 * 48.39153 * 4 3 2 27 27 H 1.08996 * 109.47229 * 168.39463 * 4 3 2 28 28 H 1.08998 * 109.46710 * 179.36513 * 5 4 3 29 29 H 1.08991 * 109.46990 * 299.36364 * 5 4 3 30 30 H 1.09002 * 109.46964 * 59.36726 * 5 4 3 31 31 H 1.09000 * 109.46816 * 49.99762 * 6 3 2 32 32 H 1.08999 * 109.47388 * 290.00131 * 6 3 2 33 33 H 1.08997 * 109.46723 * 269.69523 * 10 9 8 34 34 H 1.08998 * 109.47314 * 29.69774 * 10 9 8 35 35 H 1.09001 * 109.46607 * 149.69562 * 10 9 8 36 36 H 1.07997 * 126.40802 * 180.23101 * 11 9 8 37 37 H 0.96997 * 120.00090 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4123 1.4511 0.4628 5 6 3.4635 1.1761 1.9670 6 6 1.8772 1.9937 -1.3293 7 6 2.1546 3.4721 -1.2372 8 7 1.2754 4.4022 -0.9919 9 7 1.9114 5.6481 -0.9887 10 6 1.2600 6.9393 -0.7543 11 6 3.2214 5.4629 -1.2309 12 6 3.4201 4.0941 -1.3950 13 6 4.6497 3.4471 -1.6678 14 1 4.6824 2.3730 -1.7758 15 6 5.8204 4.1981 -1.7972 16 7 5.7809 5.5012 -1.6657 17 14 7.4425 3.3446 -2.1578 18 1 7.2191 1.8801 -2.2603 19 1 7.9942 3.8516 -3.4400 20 1 8.4033 3.6238 -1.0606 21 1 -0.3633 -1.0230 0.0989 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4258 -0.9353 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 4.0059 0.7036 -0.0636 27 1 3.8156 2.4434 0.2609 28 1 4.4980 1.2140 2.3082 29 1 2.8792 1.9300 2.4942 30 1 3.0499 0.1882 2.1700 31 1 0.8621 1.8366 -1.6939 32 1 2.5858 1.5333 -2.0177 33 1 0.9256 7.3552 -1.7047 34 1 0.4020 6.7994 -0.0969 35 1 1.9680 7.6238 -0.2870 36 1 3.9777 6.2317 -1.2880 37 1 6.5937 6.0226 -1.7560 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675053037.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:34 Heat of formation + Delta-G solvation = 52.088733 kcal Electronic energy + Delta-G solvation = -17487.139639 eV Core-core repulsion = 14879.207258 eV Total energy + Delta-G solvation = -2607.932381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22375 -38.71816 -35.40456 -33.89580 -32.62151 -30.88997 -30.46550 -28.24027 -26.79481 -24.90480 -23.73867 -21.78282 -21.36858 -19.85252 -18.68950 -17.29419 -16.51401 -16.39943 -15.99532 -15.58470 -15.45664 -14.70978 -14.49489 -14.31653 -13.95391 -13.37805 -13.29930 -13.09434 -12.99329 -12.87796 -12.79837 -12.60645 -12.37890 -12.25984 -12.10677 -11.69800 -11.57635 -11.43565 -11.03656 -10.71372 -9.57143 -9.11909 -8.93710 -8.30712 -5.94967 1.37070 1.44035 1.56141 1.57221 2.25871 2.31281 2.41836 3.21836 3.65376 4.03735 4.17094 4.30032 4.37712 4.40560 4.52798 4.57555 4.66763 4.68308 4.71801 4.73002 4.84734 4.94267 5.07364 5.09951 5.17534 5.36229 5.38556 5.45393 5.46961 5.67020 5.92902 6.04288 6.25276 6.42437 6.53628 6.98382 7.19047 7.22760 7.58036 8.71421 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017155 B = 0.010521 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.816997 B = 2660.687617 C = 3819.468289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.039 3.961 5 C -0.132 4.132 6 C 0.162 3.838 7 C 0.013 3.987 8 N -0.334 5.334 9 N -0.399 5.399 10 C 0.112 3.888 11 C -0.070 4.070 12 C -0.069 4.069 13 C -0.438 4.438 14 H 0.065 0.935 15 C 0.013 3.987 16 N -0.870 5.870 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.274 1.274 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.182 0.818 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -5.774 3.136 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 N -0.264 5.264 4 C -0.089 4.089 5 C -0.190 4.190 6 C 0.033 3.967 7 C -0.154 4.154 8 N -0.159 5.159 9 N -0.187 5.187 10 C -0.029 4.029 11 C -0.213 4.213 12 C -0.079 4.079 13 C -0.473 4.473 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.504 5.504 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.200 1.200 21 H 0.098 0.902 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.198 0.802 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.634 -4.958 3.706 8.370 hybrid contribution 2.210 -0.338 -1.022 2.458 sum -3.425 -5.296 2.684 6.854 Atomic orbital electron populations 1.21714 0.94130 1.02091 1.01617 1.22234 0.96863 0.87934 1.01226 1.62048 1.21031 1.18443 1.24897 1.22293 0.88121 1.02145 0.96299 1.21681 1.01364 1.01533 0.94400 1.19968 1.00119 0.86716 0.89924 1.22339 0.92271 0.95181 1.05585 1.76228 1.23443 0.89868 1.26349 1.48049 1.06608 1.05335 1.58753 1.21720 0.98723 0.80310 1.02175 1.23857 0.85110 0.99602 1.12723 1.18329 0.93124 0.91355 1.05087 1.18879 0.91198 0.93804 1.43429 0.91639 1.26295 1.03189 0.95292 0.94506 1.69532 1.29694 1.06943 1.44238 0.85234 0.77807 0.79116 0.78018 1.18682 1.20174 1.19980 0.90212 0.92979 0.93637 0.94729 0.89649 0.95573 0.90820 0.91958 0.93726 0.91357 0.90191 0.94547 0.91239 0.89696 0.89337 0.80197 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.94 71.98 0.72 -2.75 16 2 C 0.04 1.28 5.55 86.30 0.48 1.76 16 3 N -0.54 -20.19 4.38 -900.80 -3.95 -24.14 16 4 C 0.04 1.52 4.95 86.30 0.43 1.95 16 5 C -0.13 -4.21 9.98 71.98 0.72 -3.49 16 6 C 0.16 6.78 5.15 85.56 0.44 7.22 16 7 C 0.01 0.64 6.17 43.69 0.27 0.91 16 8 N -0.33 -16.74 12.47 -46.35 -0.58 -17.32 16 9 N -0.40 -19.10 3.98 -366.48 -1.46 -20.56 16 10 C 0.11 3.85 11.44 127.77 1.46 5.31 16 11 C -0.07 -3.77 10.46 84.53 0.88 -2.88 16 12 C -0.07 -3.78 5.06 -21.30 -0.11 -3.89 16 13 C -0.44 -23.72 7.48 23.45 0.18 -23.55 16 14 H 0.07 3.45 6.85 -2.91 -0.02 3.43 16 15 C 0.01 0.66 5.49 85.16 0.47 1.13 16 16 N -0.87 -46.57 10.33 21.79 0.23 -46.35 16 17 Si 0.97 40.67 29.56 68.60 2.03 42.70 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.20 6.97 -2.39 -0.02 1.18 16 24 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 25 H 0.09 2.17 6.21 -2.38 -0.01 2.15 16 26 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 27 H 0.07 3.53 4.41 -2.39 -0.01 3.52 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.81 6.50 -2.39 -0.02 1.79 16 31 H 0.08 3.10 6.72 -2.39 -0.02 3.09 16 32 H 0.04 1.55 7.59 -2.39 -0.02 1.54 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.18 9.97 5.75 -2.91 -0.02 9.95 16 37 H 0.27 13.53 8.30 -92.71 -0.77 12.76 16 Total: -1.00 -63.29 296.06 3.24 -60.05 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 1.05 Total: 23.92 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 5.93 Total: -18.29 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -5.76 Total: -108.37 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -63.29 3.24 -60.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675053037.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.135 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds