Wall clock time and date at job start Mon Mar 30 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30502 * 125.65275 * 2 1 4 4 C 1.34122 * 109.25786 * 180.02562 * 3 2 1 5 5 C 1.34675 * 108.02187 * 359.73152 * 4 3 2 6 6 N 1.35048 * 125.65002 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.39539 * 359.96110 * 6 2 1 8 8 C 1.52998 * 109.46963 * 85.00337 * 7 6 2 9 9 H 1.09002 * 109.46975 * 304.99521 * 8 7 6 10 10 C 1.52998 * 109.47207 * 64.99930 * 8 7 6 11 11 C 1.53003 * 109.47358 * 184.99900 * 8 7 6 12 12 N 1.46494 * 109.47340 * 174.99985 * 11 8 7 13 13 C 1.46503 * 119.99989 * 269.99917 * 12 11 8 14 14 C 1.36932 * 120.00328 * 90.00021 * 12 11 8 15 15 H 1.08003 * 119.99627 * 20.14288 * 14 12 11 16 16 C 1.38807 * 120.00594 * 200.14085 * 14 12 11 17 17 N 1.31622 * 119.99715 * 15.09471 * 16 14 12 18 18 Si 1.86801 * 120.00453 * 195.10126 * 16 14 12 19 19 H 1.48493 * 109.47265 * 84.99687 * 18 16 14 20 20 H 1.48503 * 109.47012 * 204.99890 * 18 16 14 21 21 H 1.48503 * 109.46781 * 324.99895 * 18 16 14 22 22 H 1.08995 * 109.46763 * 269.96108 * 1 2 3 23 23 H 1.09002 * 109.46563 * 29.95882 * 1 2 3 24 24 H 1.08993 * 109.46869 * 149.95817 * 1 2 3 25 25 H 1.08003 * 125.99567 * 180.02562 * 4 3 2 26 26 H 1.07998 * 126.59084 * 180.27765 * 5 4 3 27 27 H 1.09000 * 109.47315 * 324.99945 * 7 6 2 28 28 H 1.09005 * 109.47287 * 204.99890 * 7 6 2 29 29 H 1.09002 * 109.47005 * 60.00125 * 10 8 7 30 30 H 1.09006 * 109.46949 * 179.97438 * 10 8 7 31 31 H 1.09001 * 109.47245 * 299.99792 * 10 8 7 32 32 H 1.08997 * 109.46978 * 295.00293 * 11 8 7 33 33 H 1.09000 * 109.46840 * 54.99429 * 11 8 7 34 34 H 1.08999 * 109.47303 * 95.10423 * 13 12 11 35 35 H 1.09000 * 109.47461 * 215.10647 * 13 12 11 36 36 H 1.09005 * 109.47020 * 335.10401 * 13 12 11 37 37 H 0.97002 * 119.99972 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2941 -1.0974 -0.0005 7 6 1.8425 -2.4910 -0.0003 8 6 1.5650 -2.9373 -1.4372 9 1 0.8562 -2.2509 -1.9004 10 6 2.8716 -2.9353 -2.2332 11 6 0.9757 -4.3493 -1.4279 12 7 0.5994 -4.7304 -2.7914 13 6 -0.7468 -4.4364 -3.2891 14 6 1.5058 -5.3614 -3.6009 15 1 2.3571 -5.8658 -3.1679 16 6 1.3308 -5.3530 -4.9778 17 7 0.4842 -4.5088 -5.5284 18 14 2.2963 -6.5398 -6.0496 19 1 1.5858 -7.8423 -6.1102 20 1 2.4216 -5.9800 -7.4194 21 1 3.6493 -6.7404 -5.4711 22 1 -0.3633 -0.0007 1.0276 23 1 -0.3632 0.8904 -0.5132 24 1 -0.3633 -0.8896 -0.5145 25 1 4.4100 1.3410 -0.0003 26 1 4.4777 -1.2832 0.0104 27 1 0.9301 -2.5772 0.5896 28 1 2.6168 -3.1239 0.4335 29 1 3.5803 -3.6218 -1.7700 30 1 2.6739 -3.2538 -3.2568 31 1 3.2915 -1.9295 -2.2399 32 1 1.7181 -5.0503 -1.0465 33 1 0.0935 -4.3705 -0.7881 34 1 -0.7341 -3.4938 -3.8363 35 1 -1.0718 -5.2375 -3.9529 36 1 -1.4362 -4.3592 -2.4482 37 1 0.3621 -4.5026 -6.4907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685977102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:33 Heat of formation + Delta-G solvation = 73.796758 kcal Electronic energy + Delta-G solvation = -17324.938872 eV Core-core repulsion = 14717.947823 eV Total energy + Delta-G solvation = -2606.991050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86672 -36.96534 -34.55410 -31.98467 -31.54818 -30.37591 -26.95406 -26.28499 -25.96239 -25.39831 -21.75065 -21.12149 -19.80582 -19.15096 -17.00603 -16.50357 -15.41100 -14.96832 -14.65144 -13.98865 -13.74010 -13.52522 -13.34349 -12.90607 -12.68393 -12.56342 -12.17192 -12.10543 -11.88775 -11.35641 -11.00595 -10.94742 -10.67063 -10.54240 -10.38862 -10.13008 -9.94312 -9.87656 -9.71987 -9.22605 -8.55956 -8.09747 -6.84133 -5.77206 -3.20272 2.30047 3.06851 3.35207 3.36742 3.41779 3.42813 4.45936 4.69531 4.86269 5.02031 5.16534 5.37219 5.44533 5.46694 5.57696 5.62258 5.76922 5.79303 5.91783 5.99743 6.02724 6.16770 6.44188 6.49882 6.61488 6.62422 6.69216 6.92065 7.01598 7.28524 7.32545 7.45524 7.67088 7.76430 8.33248 8.34363 9.18320 9.81971 10.29727 11.27663 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.006147 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.222055 B = 4553.834361 C = 4833.420702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.202 3.798 3 N -0.501 5.501 4 C -0.039 4.039 5 C -0.052 4.052 6 N -0.442 5.442 7 C 0.104 3.896 8 C -0.124 4.124 9 H 0.069 0.931 10 C -0.136 4.136 11 C 0.160 3.840 12 N -0.598 5.598 13 C 0.162 3.838 14 C -0.250 4.250 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.905 5.905 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.164 0.836 26 H 0.169 0.831 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.044 0.956 36 H -0.003 1.003 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 4.250 11.180 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 N -0.221 5.221 4 C -0.188 4.188 5 C -0.186 4.186 6 N -0.124 5.124 7 C -0.019 4.019 8 C -0.146 4.146 9 H 0.087 0.913 10 C -0.193 4.193 11 C 0.031 3.969 12 N -0.319 5.319 13 C 0.018 3.982 14 C -0.379 4.379 15 H 0.086 0.914 16 C -0.197 4.197 17 N -0.550 5.550 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.206 1.206 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.095 0.905 25 H 0.181 0.819 26 H 0.186 0.814 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.016 0.984 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.232 4.891 10.981 12.084 hybrid contribution 1.056 -1.371 -0.785 1.901 sum 2.288 3.520 10.195 11.026 Atomic orbital electron populations 1.20175 0.85358 1.04241 1.02944 1.23199 0.95621 0.81559 1.05619 1.70179 1.02257 1.28602 1.21023 1.22167 0.94713 0.92778 1.09110 1.22627 0.87357 0.96637 1.12008 1.45512 1.06246 1.07790 1.52809 1.22204 1.00876 0.78374 1.00463 1.22327 0.99460 1.01256 0.91600 0.91268 1.21728 0.95114 0.98974 1.03456 1.20791 0.96617 0.91396 0.88080 1.43958 1.10314 1.67576 1.10090 1.20807 0.83056 1.00441 0.93917 1.19125 1.05657 1.25615 0.87545 0.91360 1.24954 0.99371 0.98573 0.96842 1.70080 1.38971 1.35884 1.10101 0.86321 0.79614 0.80933 0.79983 1.21468 1.21778 1.20598 0.90666 0.89504 0.90471 0.81868 0.81418 0.89680 0.89462 0.94226 0.89135 0.94903 0.93627 0.94375 0.95302 0.93771 0.98436 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.04 36.01 0.36 -0.48 16 2 C 0.20 3.16 7.90 -155.41 -1.23 1.93 16 3 N -0.50 -8.57 11.25 -10.81 -0.12 -8.69 16 4 C -0.04 -0.59 11.87 -17.81 -0.21 -0.80 16 5 C -0.05 -0.74 10.28 -16.56 -0.17 -0.91 16 6 N -0.44 -6.53 2.47 -113.90 -0.28 -6.81 16 7 C 0.10 1.39 5.08 -4.04 -0.02 1.37 16 8 C -0.12 -2.12 2.80 -90.62 -0.25 -2.37 16 9 H 0.07 1.34 7.74 -51.93 -0.40 0.94 16 10 C -0.14 -2.55 8.50 37.16 0.32 -2.24 16 11 C 0.16 2.96 5.21 -4.04 -0.02 2.94 16 12 N -0.60 -14.10 2.80 -181.12 -0.51 -14.60 16 13 C 0.16 3.84 9.02 59.85 0.54 4.38 16 14 C -0.25 -6.49 7.62 -15.06 -0.11 -6.60 16 15 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 16 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 17 N -0.91 -25.72 10.66 55.49 0.59 -25.13 16 18 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.08 0.93 7.43 -51.93 -0.39 0.54 16 25 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 26 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 28 H 0.09 1.05 8.13 -51.93 -0.42 0.62 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.12 6.35 -51.93 -0.33 1.79 16 31 H 0.03 0.60 6.77 -51.93 -0.35 0.25 16 32 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16 33 H 0.04 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 35 H 0.04 1.13 7.20 -51.93 -0.37 0.76 16 36 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -30.36 300.84 -7.66 -38.02 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.95 Total: -0.86 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.89 Total: -2.86 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.32 Total: -55.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.36 -7.66 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685977102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.820 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds