Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34130 * 125.99316 * 2 1 4 4 C 1.30490 * 109.26135 * 180.02562 * 3 2 1 5 5 N 1.35048 * 108.69655 * 359.76576 * 4 3 2 6 6 H 0.97009 * 126.39717 * 180.26072 * 5 4 3 7 7 C 1.34673 * 125.98794 * 180.02562 * 2 1 3 8 8 C 1.50701 * 126.59366 * 359.96193 * 7 2 1 9 9 N 1.46898 * 109.46928 * 293.04317 * 8 7 2 10 10 C 1.46903 * 110.99602 * 162.51099 * 9 8 7 11 11 C 1.50700 * 109.46765 * 196.13626 * 10 9 8 12 12 H 1.08000 * 120.00220 * 5.08729 * 11 10 9 13 13 C 1.37881 * 120.00231 * 185.08736 * 11 10 9 14 14 N 1.31516 * 119.99442 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00379 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47303 * 59.99887 * 15 13 11 17 17 H 1.48495 * 109.47402 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47466 * 300.00245 * 15 13 11 19 19 C 1.46904 * 110.99825 * 286.46165 * 9 8 7 20 20 C 1.53007 * 109.47152 * 313.00749 * 19 9 8 21 21 C 1.52994 * 109.47353 * 73.00831 * 19 9 8 22 22 H 1.09003 * 109.47273 * 274.58377 * 1 2 3 23 23 H 1.09003 * 109.47397 * 34.58325 * 1 2 3 24 24 H 1.09004 * 109.47676 * 154.58516 * 1 2 3 25 25 H 1.07995 * 125.65331 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47037 * 173.03751 * 8 7 2 27 27 H 1.08999 * 109.46880 * 53.03940 * 8 7 2 28 28 H 1.08995 * 109.46859 * 316.13307 * 10 9 8 29 29 H 1.08999 * 109.47092 * 76.13845 * 10 9 8 30 30 H 0.97001 * 119.99901 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.46922 * 193.01342 * 19 9 8 32 32 H 1.08994 * 109.46632 * 71.59528 * 20 19 9 33 33 H 1.08994 * 109.47043 * 191.60268 * 20 19 9 34 34 H 1.09003 * 109.46546 * 311.59914 * 20 19 9 35 35 H 1.09007 * 109.47083 * 50.86618 * 21 19 9 36 36 H 1.08995 * 109.47468 * 170.86770 * 21 19 9 37 37 H 1.09000 * 109.46916 * 290.86876 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5448 0.7096 -0.0006 5 7 3.5911 -0.6401 0.0043 6 1 4.3913 -1.1886 0.0086 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 7 1.1840 -2.8326 1.2745 10 6 0.3779 -4.0561 1.1690 11 6 -0.5823 -4.1265 2.3284 12 1 -0.6506 -3.3029 3.0238 13 6 -1.3736 -5.2422 2.5015 14 7 -1.2900 -6.2453 1.6550 15 14 -2.5632 -5.3298 3.9389 16 1 -3.5356 -4.2114 3.8456 17 1 -3.2910 -6.6236 3.9011 18 1 -1.8083 -5.2242 5.2134 19 6 2.1629 -2.9394 2.3647 20 6 3.3329 -3.8170 1.9154 21 6 2.6799 -1.5451 2.7243 22 1 -0.3634 0.0821 1.0244 23 1 -0.3634 0.8461 -0.5833 24 1 -0.3634 -0.9282 -0.4410 25 1 4.4003 1.3687 -0.0003 26 1 2.7116 -3.1796 -0.1254 27 1 1.1484 -2.6892 -0.8211 28 1 -0.1820 -4.0427 0.2339 29 1 1.0341 -4.9262 1.1873 30 1 -1.8470 -7.0301 1.7765 31 1 1.6872 -3.3869 3.2374 32 1 3.9314 -3.2769 1.1820 33 1 3.9519 -4.0662 2.7772 34 1 2.9485 -4.7332 1.4671 35 1 1.8355 -0.8753 2.8873 36 1 3.2786 -1.6028 3.6333 37 1 3.2940 -1.1637 1.9085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687804108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = 63.507476 kcal Electronic energy + Delta-G solvation = -17712.831896 eV Core-core repulsion = 15105.394669 eV Total energy + Delta-G solvation = -2607.437227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.91612 -37.69223 -32.95825 -32.69811 -31.64587 -30.44249 -27.84083 -26.75528 -25.95203 -24.07967 -22.07854 -21.35620 -19.59756 -18.72881 -17.35702 -16.16107 -15.70360 -14.89344 -14.59995 -14.07265 -14.02366 -13.56247 -12.99182 -12.67750 -12.37375 -12.28700 -12.07949 -11.89764 -11.57066 -11.49081 -11.21127 -10.94262 -10.77389 -10.64183 -10.48279 -10.16654 -9.82037 -9.64786 -9.35909 -9.24003 -8.43048 -7.77712 -7.24167 -6.02691 -4.03623 2.35690 3.34180 3.36039 3.38220 3.42035 3.47024 4.43363 4.85240 4.93951 5.28084 5.32737 5.42519 5.52654 5.65432 5.75092 5.82936 5.92022 6.03465 6.08800 6.22103 6.24616 6.34715 6.43063 6.46345 6.58270 6.62040 6.82407 6.83661 7.18379 7.25377 7.36144 7.64828 7.82789 8.08816 8.18838 8.40392 8.53576 9.04990 9.60749 11.07593 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.007081 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.874279 B = 3953.028356 C = 4236.597817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.018 3.982 3 N -0.495 5.495 4 C 0.168 3.832 5 N -0.572 5.572 6 H 0.413 0.587 7 C 0.007 3.993 8 C 0.120 3.880 9 N -0.518 5.518 10 C 0.192 3.808 11 C -0.503 4.503 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.083 3.917 20 C -0.177 4.177 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.200 0.800 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.027 0.973 29 H -0.001 1.001 30 H 0.261 0.739 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 8.015 -2.806 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 N -0.215 5.215 4 C -0.115 4.115 5 N -0.178 5.178 6 H 0.250 0.750 7 C -0.107 4.107 8 C -0.010 4.010 9 N -0.242 5.242 10 C 0.067 3.933 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.540 5.540 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.026 4.026 20 C -0.236 4.236 21 C -0.205 4.205 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.216 0.784 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.570 9.051 -2.739 13.454 hybrid contribution 0.796 -1.895 0.622 2.148 sum 10.366 7.155 -2.117 12.773 Atomic orbital electron populations 1.19925 0.87505 1.01667 1.02377 1.20419 0.96487 0.87374 1.06710 1.70127 1.00492 1.31215 1.19673 1.24688 0.97269 0.82025 1.07539 1.43342 1.08214 1.08511 1.57719 0.75007 1.21080 0.82857 0.97563 1.09236 1.20488 0.97842 0.87530 0.95145 1.62270 1.21211 1.39660 1.01051 1.19779 0.91484 0.84144 0.97871 1.21108 1.20324 1.02022 1.10715 0.91852 1.24970 0.97411 0.95588 0.96571 1.69944 1.40464 1.06877 1.36716 0.86583 0.81155 0.77126 0.82681 1.20117 1.21455 1.20378 1.21568 0.90611 0.94119 0.96294 1.22417 0.99548 1.00929 1.00691 1.22106 1.00829 0.97650 0.99902 0.91205 0.92732 0.91013 0.78371 0.94526 0.89562 0.95538 0.98294 0.92925 0.89111 0.94222 0.93098 0.92029 0.92228 0.94231 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.26 36.00 0.37 -0.58 16 2 C 0.02 0.31 7.09 -82.85 -0.59 -0.27 16 3 N -0.49 -8.15 11.25 -10.88 -0.12 -8.27 16 4 C 0.17 2.13 12.97 -90.38 -1.17 0.96 16 5 N -0.57 -7.08 4.31 -10.30 -0.04 -7.13 16 6 H 0.41 3.89 8.96 -40.82 -0.37 3.53 16 7 C 0.01 0.11 4.32 -81.60 -0.35 -0.24 16 8 C 0.12 2.04 4.66 -4.98 -0.02 2.02 16 9 N -0.52 -10.42 4.38 -229.52 -1.01 -11.43 16 10 C 0.19 4.71 4.64 -4.97 -0.02 4.68 16 11 C -0.50 -13.66 8.32 -34.44 -0.29 -13.94 16 12 H 0.06 1.73 7.79 -52.49 -0.41 1.32 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.08 1.54 2.78 -67.71 -0.19 1.35 16 20 C -0.18 -2.86 7.98 37.16 0.30 -2.57 16 21 C -0.15 -2.43 8.38 37.15 0.31 -2.12 16 22 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.21 7.66 -51.93 -0.40 0.82 16 25 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.04 0.59 5.62 -51.93 -0.29 0.30 16 27 H 0.09 1.51 7.56 -51.93 -0.39 1.12 16 28 H 0.03 0.69 7.70 -51.93 -0.40 0.29 16 29 H 0.00 -0.02 6.57 -51.93 -0.34 -0.36 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.09 1.94 7.15 -51.93 -0.37 1.56 16 32 H 0.04 0.55 6.67 -51.93 -0.35 0.20 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.11 6.63 -51.93 -0.34 0.77 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.82 4.11 -51.93 -0.21 0.61 16 LS Contribution 294.45 15.07 4.44 4.44 Total: -1.00 -30.39 294.45 -8.32 -38.71 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.55 Total: 1.90 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.75 Total: -9.26 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.44 Total: -52.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.39 -8.32 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.217 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds