Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34130 * 125.99316 * 2 1 4 4 C 1.30490 * 109.26135 * 180.02562 * 3 2 1 5 5 N 1.35048 * 108.69655 * 359.76576 * 4 3 2 6 6 H 0.97009 * 126.39717 * 180.26072 * 5 4 3 7 7 C 1.34673 * 125.98794 * 180.02562 * 2 1 3 8 8 C 1.50701 * 126.59366 * 359.96193 * 7 2 1 9 9 N 1.46898 * 109.46928 * 293.04317 * 8 7 2 10 10 C 1.46903 * 110.99602 * 162.51099 * 9 8 7 11 11 C 1.50700 * 109.46765 * 196.13626 * 10 9 8 12 12 H 1.08000 * 120.00220 * 5.08729 * 11 10 9 13 13 C 1.37881 * 120.00231 * 185.08736 * 11 10 9 14 14 N 1.31516 * 119.99442 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00379 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47303 * 59.99887 * 15 13 11 17 17 H 1.48495 * 109.47402 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47466 * 300.00245 * 15 13 11 19 19 C 1.46904 * 110.99825 * 286.46165 * 9 8 7 20 20 C 1.53007 * 109.47152 * 313.00749 * 19 9 8 21 21 C 1.52994 * 109.47353 * 73.00831 * 19 9 8 22 22 H 1.09003 * 109.47273 * 274.58377 * 1 2 3 23 23 H 1.09003 * 109.47397 * 34.58325 * 1 2 3 24 24 H 1.09004 * 109.47676 * 154.58516 * 1 2 3 25 25 H 1.07995 * 125.65331 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.47037 * 173.03751 * 8 7 2 27 27 H 1.08999 * 109.46880 * 53.03940 * 8 7 2 28 28 H 1.08995 * 109.46859 * 316.13307 * 10 9 8 29 29 H 1.08999 * 109.47092 * 76.13845 * 10 9 8 30 30 H 0.97001 * 119.99901 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.46922 * 193.01342 * 19 9 8 32 32 H 1.08994 * 109.46632 * 71.59528 * 20 19 9 33 33 H 1.08994 * 109.47043 * 191.60268 * 20 19 9 34 34 H 1.09003 * 109.46546 * 311.59914 * 20 19 9 35 35 H 1.09007 * 109.47083 * 50.86618 * 21 19 9 36 36 H 1.08995 * 109.47468 * 170.86770 * 21 19 9 37 37 H 1.09000 * 109.46916 * 290.86876 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5448 0.7096 -0.0006 5 7 3.5911 -0.6401 0.0043 6 1 4.3913 -1.1886 0.0086 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 7 1.1840 -2.8326 1.2745 10 6 0.3779 -4.0561 1.1690 11 6 -0.5823 -4.1265 2.3284 12 1 -0.6506 -3.3029 3.0238 13 6 -1.3736 -5.2422 2.5015 14 7 -1.2900 -6.2453 1.6550 15 14 -2.5632 -5.3298 3.9389 16 1 -3.5356 -4.2114 3.8456 17 1 -3.2910 -6.6236 3.9011 18 1 -1.8083 -5.2242 5.2134 19 6 2.1629 -2.9394 2.3647 20 6 3.3329 -3.8170 1.9154 21 6 2.6799 -1.5451 2.7243 22 1 -0.3634 0.0821 1.0244 23 1 -0.3634 0.8461 -0.5833 24 1 -0.3634 -0.9282 -0.4410 25 1 4.4003 1.3687 -0.0003 26 1 2.7116 -3.1796 -0.1254 27 1 1.1484 -2.6892 -0.8211 28 1 -0.1820 -4.0427 0.2339 29 1 1.0341 -4.9262 1.1873 30 1 -1.8470 -7.0301 1.7765 31 1 1.6872 -3.3869 3.2374 32 1 3.9314 -3.2769 1.1820 33 1 3.9519 -4.0662 2.7772 34 1 2.9485 -4.7332 1.4671 35 1 1.8355 -0.8753 2.8873 36 1 3.2786 -1.6028 3.6333 37 1 3.2940 -1.1637 1.9085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687804108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = 44.095443 kcal Electronic energy + Delta-G solvation = -17713.673664 eV Core-core repulsion = 15105.394669 eV Total energy + Delta-G solvation = -2608.278996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.06988 -39.24174 -34.92778 -33.97352 -32.97954 -32.02115 -29.44301 -28.10322 -27.56136 -25.53822 -23.93432 -22.48833 -20.99834 -20.05585 -18.59767 -18.14836 -17.24014 -16.45229 -16.18753 -15.55970 -15.24643 -15.06351 -14.58070 -14.09342 -13.97848 -13.64237 -13.58256 -13.25966 -13.15401 -12.87228 -12.78000 -12.68501 -12.48963 -12.34064 -12.13634 -11.77772 -11.52295 -11.34630 -10.82101 -10.56881 -10.48778 -9.01178 -8.88338 -8.15899 -6.24688 1.20203 1.41967 1.43989 1.51913 2.26812 2.34118 2.43558 3.16089 3.41098 3.82765 4.03326 4.12746 4.16005 4.35704 4.49043 4.59695 4.59869 4.63835 4.74735 4.79649 4.92325 4.99278 5.03350 5.17535 5.19078 5.25040 5.26971 5.38824 5.44446 5.55163 5.71833 5.92870 6.13447 6.44072 6.66752 6.72779 6.92000 7.27976 7.44431 8.93350 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.007081 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.874279 B = 3953.028356 C = 4236.597817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.002 4.002 3 N -0.533 5.533 4 C 0.196 3.804 5 N -0.559 5.559 6 H 0.430 0.570 7 C -0.002 4.002 8 C 0.124 3.876 9 N -0.525 5.525 10 C 0.210 3.790 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.933 5.933 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.271 1.271 19 C 0.080 3.920 20 C -0.168 4.168 21 C -0.133 4.133 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.248 0.752 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.003 0.997 29 H -0.023 1.023 30 H 0.263 0.737 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.353 9.237 -2.373 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.130 4.130 3 N -0.254 5.254 4 C -0.088 4.088 5 N -0.166 5.166 6 H 0.271 0.729 7 C -0.117 4.117 8 C -0.005 4.005 9 N -0.249 5.249 10 C 0.084 3.916 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.029 4.029 20 C -0.227 4.227 21 C -0.191 4.191 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.264 0.736 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.021 0.979 29 H -0.005 1.005 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.625 10.272 -2.305 15.683 hybrid contribution 0.243 -2.200 0.451 2.259 sum 11.868 8.072 -1.854 14.472 Atomic orbital electron populations 1.19822 0.88393 1.01458 1.01408 1.20479 0.96563 0.88369 1.07573 1.70120 1.02076 1.31386 1.21804 1.25624 0.97413 0.82286 1.03510 1.43237 1.07604 1.08808 1.56949 0.72887 1.20623 0.84327 0.96121 1.10612 1.20374 0.97906 0.89056 0.93148 1.62151 1.22563 1.37076 1.03107 1.19377 0.91157 0.85308 0.95799 1.21390 1.20926 1.01832 1.11248 0.92599 1.25776 0.99071 0.95239 0.99122 1.70057 1.41460 1.07432 1.38415 0.85574 0.79004 0.77269 0.79601 1.19611 1.20881 1.19602 1.21565 0.90911 0.95872 0.94518 1.22302 0.98875 0.99524 1.01988 1.21980 1.00247 0.95392 1.01478 0.92742 0.91703 0.92212 0.73589 0.92982 0.90732 0.97921 1.00540 0.92817 0.92580 0.91374 0.91285 0.94509 0.94658 0.92271 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.80 10.26 71.23 0.73 -1.07 16 2 C 0.00 -0.07 7.09 41.39 0.29 0.23 16 3 N -0.53 -16.34 11.25 -188.33 -2.12 -18.46 16 4 C 0.20 4.15 12.97 180.26 2.34 6.48 16 5 N -0.56 -11.78 4.31 -186.50 -0.80 -12.59 16 6 H 0.43 6.09 8.96 -92.70 -0.83 5.26 16 7 C 0.00 -0.05 4.32 40.95 0.18 0.13 16 8 C 0.12 4.22 4.66 85.56 0.40 4.62 16 9 N -0.53 -21.58 4.38 -880.06 -3.86 -25.43 16 10 C 0.21 10.73 4.64 85.56 0.40 11.12 16 11 C -0.52 -28.89 8.32 25.60 0.21 -28.68 16 12 H 0.06 3.15 7.79 -2.91 -0.02 3.13 16 13 C 0.01 0.33 5.46 84.66 0.46 0.79 16 14 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 15 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 19 C 0.08 2.95 2.78 44.91 0.12 3.08 16 20 C -0.17 -5.18 7.98 71.98 0.57 -4.61 16 21 C -0.13 -4.16 8.38 71.98 0.60 -3.56 16 22 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 2.12 7.66 -2.39 -0.02 2.10 16 25 H 0.25 2.61 8.06 -2.91 -0.02 2.58 16 26 H 0.05 1.60 5.62 -2.39 -0.01 1.58 16 27 H 0.07 2.69 7.56 -2.39 -0.02 2.67 16 28 H 0.00 0.15 7.70 -2.39 -0.02 0.13 16 29 H -0.02 -1.27 6.57 -2.39 -0.02 -1.28 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.06 2.44 7.15 -2.39 -0.02 2.43 16 32 H 0.07 1.68 6.67 -2.39 -0.02 1.66 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.31 6.63 -2.39 -0.02 1.30 16 35 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.98 4.11 -2.39 -0.01 1.97 16 Total: -1.00 -67.54 294.45 2.08 -65.46 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.23 Total: 11.08 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 6.31 Total: -11.46 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -6.49 Total: -111.59 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.54 2.08 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.556 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds