Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39874 * 125.89807 * 2 1 4 4 C 1.35314 * 107.91755 * 180.14458 * 3 2 1 5 5 C 1.50707 * 126.12471 * 179.90698 * 4 3 2 6 6 N 1.34944 * 107.74991 * 359.63662 * 4 3 2 7 7 C 1.46503 * 126.04258 * 180.20849 * 6 4 3 8 8 C 1.53000 * 109.47005 * 90.00232 * 7 6 4 9 9 C 1.53002 * 109.46958 * 180.02562 * 8 7 6 10 10 N 1.46491 * 109.47063 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00288 * 89.99987 * 10 9 8 12 12 C 1.36942 * 120.00133 * 269.99680 * 10 9 8 13 13 H 1.07997 * 119.99892 * 142.03692 * 12 10 9 14 14 C 1.38804 * 119.99914 * 322.04172 * 12 10 9 15 15 N 1.31621 * 120.00246 * 157.02174 * 14 12 10 16 16 Si 1.86807 * 120.00056 * 337.01516 * 14 12 10 17 17 H 1.48495 * 109.46951 * 95.68287 * 16 14 12 18 18 H 1.48497 * 109.47371 * 215.68261 * 16 14 12 19 19 H 1.48493 * 109.47166 * 335.68555 * 16 14 12 20 20 N 1.30837 * 125.89862 * 179.73883 * 2 1 3 21 21 H 1.09000 * 109.47296 * 270.23949 * 1 2 3 22 22 H 1.09006 * 109.47212 * 30.23416 * 1 2 3 23 23 H 1.08994 * 109.47281 * 150.22890 * 1 2 3 24 24 H 1.08004 * 126.04349 * 0.02562 * 3 2 1 25 25 H 1.08990 * 109.47074 * 269.68035 * 5 4 3 26 26 H 1.09003 * 109.47140 * 149.68419 * 5 4 3 27 27 H 1.08998 * 109.47083 * 29.68793 * 5 4 3 28 28 H 1.08996 * 109.47098 * 210.00894 * 7 6 4 29 29 H 1.09001 * 109.46399 * 330.00126 * 7 6 4 30 30 H 1.09003 * 109.47139 * 299.99946 * 8 7 6 31 31 H 1.08994 * 109.46985 * 60.00096 * 8 7 6 32 32 H 1.09006 * 109.46900 * 300.00288 * 9 8 7 33 33 H 1.09001 * 109.46710 * 59.99731 * 9 8 7 34 34 H 1.09002 * 109.46990 * 85.64687 * 11 10 9 35 35 H 1.08997 * 109.47473 * 205.65219 * 11 10 9 36 36 H 1.09001 * 109.47116 * 325.65143 * 11 10 9 37 37 H 0.97000 * 120.00324 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 -0.0032 5 6 4.8350 1.5990 -0.0064 6 7 3.6088 -0.6341 0.0029 7 6 4.7899 -1.5008 0.0064 8 6 5.2015 -1.7960 1.4502 9 6 6.4354 -2.7006 1.4538 10 7 6.8292 -2.9837 2.8361 11 6 6.2760 -4.1485 3.5315 12 6 7.7145 -2.1597 3.4784 13 1 7.5798 -1.9340 4.5259 14 6 8.7850 -1.6145 2.7830 15 7 9.3592 -0.5126 3.2171 16 14 9.4109 -2.4448 1.2310 17 1 8.7902 -1.8057 0.0430 18 1 10.8871 -2.3031 1.1547 19 1 9.0528 -3.8856 1.2616 20 7 2.2741 -1.0598 0.0048 21 1 -0.3634 0.0043 1.0276 22 1 -0.3634 0.8879 -0.5175 23 1 -0.3633 -0.8920 -0.5102 24 1 1.9923 2.1599 0.0004 25 1 5.1301 1.8072 -1.0347 26 1 5.6508 1.0933 0.5103 27 1 4.6072 2.5352 0.5031 28 1 4.5561 -2.4355 -0.5032 29 1 5.6091 -1.0005 -0.5100 30 1 5.4353 -0.8611 1.9597 31 1 4.3823 -2.2962 1.9665 32 1 6.2020 -3.6355 0.9441 33 1 7.2545 -2.1999 0.9375 34 1 6.8767 -5.0284 3.3011 35 1 6.2900 -3.9703 4.6067 36 1 5.2495 -4.3135 3.2040 37 1 10.1075 -0.1318 2.7314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695514030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = 67.212834 kcal Electronic energy + Delta-G solvation = -16950.648827 eV Core-core repulsion = 14343.372276 eV Total energy + Delta-G solvation = -2607.276550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20938 -38.26437 -35.73839 -33.90883 -33.26829 -32.02258 -29.43852 -28.10052 -27.89380 -26.30903 -23.60959 -22.51032 -21.32652 -20.19705 -18.82681 -17.43075 -17.41717 -16.39892 -16.08136 -15.63362 -15.06278 -14.89202 -14.72090 -14.44488 -14.12864 -13.93651 -13.81713 -13.70570 -13.34637 -13.20884 -12.88283 -12.73432 -12.69524 -12.57010 -12.30650 -12.24266 -11.79521 -11.48822 -11.40163 -10.65421 -10.01764 -9.43478 -8.81033 -8.23016 -5.62620 0.91443 1.26955 1.41548 1.52703 1.57298 1.84872 2.39491 2.99591 3.36888 3.55807 3.73697 3.96531 4.08919 4.13849 4.27046 4.37604 4.52409 4.53498 4.60236 4.65061 4.67736 4.77342 4.84524 4.90635 4.94030 5.00206 5.05551 5.08001 5.10679 5.29271 5.35975 5.83866 5.90631 6.12331 6.13297 6.82968 6.94486 7.57930 8.00668 8.96781 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.006417 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.669355 B = 4362.073710 C = 4773.917305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 C -0.289 4.289 4 C 0.077 3.923 5 C -0.094 4.094 6 N -0.376 5.376 7 C 0.135 3.865 8 C -0.129 4.129 9 C 0.139 3.861 10 N -0.627 5.627 11 C 0.122 3.878 12 C -0.270 4.270 13 H 0.035 0.965 14 C -0.014 4.014 15 N -0.944 5.944 16 Si 0.941 3.059 17 H -0.261 1.261 18 H -0.306 1.306 19 H -0.262 1.262 20 N -0.338 5.338 21 H 0.083 0.917 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.020 0.980 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 1.688 -10.421 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C -0.318 4.318 4 C -0.051 4.051 5 C -0.152 4.152 6 N -0.158 5.158 7 C 0.013 3.987 8 C -0.170 4.170 9 C 0.013 3.987 10 N -0.351 5.351 11 C -0.022 4.022 12 C -0.400 4.400 13 H 0.053 0.947 14 C -0.211 4.211 15 N -0.588 5.588 16 Si 0.769 3.231 17 H -0.187 1.187 18 H -0.234 1.234 19 H -0.186 1.186 20 N -0.161 5.161 21 H 0.101 0.899 22 H 0.117 0.883 23 H 0.091 0.909 24 H 0.185 0.815 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.234 0.391 -10.408 16.841 hybrid contribution 0.827 0.691 -0.077 1.080 sum -12.407 1.082 -10.485 16.281 Atomic orbital electron populations 1.20268 0.84289 1.04239 1.03679 1.22983 0.98554 0.90593 0.98654 1.21434 0.90627 1.00675 1.19060 1.21686 0.98637 0.84770 1.00002 1.20562 0.91985 0.98328 1.04346 1.48777 1.05253 1.04739 1.57036 1.21777 0.83581 0.95287 0.98049 1.22278 0.98981 1.00594 0.95108 1.21169 0.94077 0.97462 0.85975 1.44175 1.50472 1.28135 1.12338 1.21183 0.96650 0.88097 0.96277 1.18651 1.03697 1.22183 0.95439 0.94731 1.26068 0.96519 0.96691 1.01845 1.70011 1.25644 1.19592 1.43507 0.85893 0.76224 0.80577 0.80450 1.18722 1.23439 1.18639 1.77211 0.87103 1.24340 1.27470 0.89880 0.88257 0.90920 0.81489 0.88361 0.92363 0.88056 0.87625 0.88050 0.94014 0.92725 0.90935 0.93994 0.96182 0.94298 0.92783 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.45 71.23 0.74 -0.49 16 2 C 0.06 1.63 7.22 43.10 0.31 1.94 16 3 C -0.29 -7.81 10.65 21.99 0.23 -7.57 16 4 C 0.08 2.28 6.93 41.41 0.29 2.56 16 5 C -0.09 -2.30 9.90 71.24 0.71 -1.60 16 6 N -0.38 -12.39 3.61 -334.69 -1.21 -13.60 16 7 C 0.13 4.18 6.07 86.38 0.52 4.70 16 8 C -0.13 -4.83 5.86 30.60 0.18 -4.65 16 9 C 0.14 5.62 4.53 86.38 0.39 6.02 16 10 N -0.63 -29.77 2.47 -726.95 -1.79 -31.56 16 11 C 0.12 4.85 10.70 127.77 1.37 6.21 16 12 C -0.27 -15.43 9.88 84.03 0.83 -14.60 16 13 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 14 C -0.01 -0.81 5.29 84.86 0.45 -0.36 16 15 N -0.94 -57.87 13.97 21.65 0.30 -57.57 16 16 Si 0.94 44.39 25.10 68.60 1.72 46.11 16 17 H -0.26 -11.16 6.68 99.48 0.66 -10.50 16 18 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 20 N -0.34 -11.46 12.58 -47.38 -0.60 -12.06 16 21 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 22 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.68 7.72 -2.39 -0.02 1.66 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.10 2.87 7.66 -2.39 -0.02 2.85 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 2.50 8.07 -2.38 -0.02 2.48 16 33 H 0.04 1.81 3.38 -2.39 -0.01 1.80 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 36 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.87 306.74 5.43 -64.44 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.98 Total: 12.08 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.02 Total: -7.83 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.30 Total: -114.79 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.72 Total: 46.11 kcal Total: -69.87 5.43 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695514030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.650 kcal (2) G-P(sol) polarization free energy of solvation -69.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds