Wall clock time and date at job start Mon Mar 30 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47563 * 2 1 4 4 C 1.52999 * 109.46977 * 120.00125 * 2 1 3 5 5 C 1.53001 * 109.47242 * 298.73597 * 4 2 1 6 6 C 1.47203 * 109.47085 * 177.89790 * 5 4 2 7 7 N 4.86625 * 99.70111 * 105.24287 * 2 1 3 8 8 N 1.46904 * 109.46923 * 239.99782 * 2 1 3 9 9 C 1.46907 * 110.99706 * 184.08027 * 8 2 1 10 10 C 1.53244 * 109.33647 * 172.74794 * 9 8 2 11 11 N 1.47080 * 108.52050 * 53.83207 * 10 9 8 12 12 C 1.36937 * 120.88317 * 128.83532 * 11 10 9 13 13 H 1.07998 * 120.00293 * 210.08261 * 12 11 10 14 14 C 1.38807 * 119.99656 * 30.08153 * 12 11 10 15 15 N 1.31626 * 120.00307 * 12.40564 * 14 12 11 16 16 Si 1.86800 * 120.00017 * 192.40400 * 14 12 11 17 17 H 1.48502 * 109.47289 * 89.99828 * 16 14 12 18 18 H 1.48502 * 109.47434 * 210.00219 * 16 14 12 19 19 H 1.48503 * 109.47153 * 330.00189 * 16 14 12 20 20 C 1.47083 * 118.23714 * 308.81016 * 11 10 9 21 21 C 1.46894 * 110.99754 * 59.78078 * 8 2 1 22 22 H 1.08996 * 109.47563 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47244 * 300.00232 * 1 2 3 24 24 H 1.09003 * 109.47255 * 59.99977 * 1 2 3 25 25 H 1.09004 * 109.47416 * 178.73535 * 4 2 1 26 26 H 1.08998 * 109.47361 * 58.74149 * 4 2 1 27 27 H 1.08994 * 109.46889 * 297.90000 * 5 4 2 28 28 H 1.08999 * 109.46917 * 57.90161 * 5 4 2 29 29 H 1.09004 * 109.48982 * 292.70615 * 9 8 2 30 30 H 1.08994 * 109.49173 * 52.79168 * 9 8 2 31 31 H 1.08994 * 109.62923 * 294.12060 * 10 9 8 32 32 H 1.08996 * 109.62198 * 173.53806 * 10 9 8 33 33 H 0.97000 * 119.99969 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.63037 * 291.48217 * 20 11 10 35 35 H 1.08996 * 109.62802 * 170.89481 * 20 11 10 36 36 H 1.08998 * 109.49761 * 307.20698 * 21 8 2 37 37 H 1.08997 * 109.49553 * 67.29263 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5561 0.0181 2.4983 6 6 2.0042 -0.7039 3.7003 7 7 2.3500 -1.2611 4.6279 8 7 2.0196 -0.6926 -1.1995 9 6 3.4849 -0.7972 -1.1856 10 6 3.9417 -1.6784 -2.3532 11 7 3.3684 -1.1408 -3.5964 12 6 4.1604 -0.8909 -4.6852 13 1 3.8997 -0.0997 -5.3724 14 6 5.2983 -1.6547 -4.9055 15 7 5.4893 -2.7634 -4.2221 16 14 6.5585 -1.1093 -6.1718 17 1 7.5705 -0.2393 -5.5203 18 1 7.2290 -2.3021 -6.7487 19 1 5.8780 -0.3525 -7.2533 20 6 1.9216 -0.8791 -3.6393 21 6 1.5443 -0.0295 -2.4210 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.1297 -0.7410 1.2380 26 1 1.6583 -1.7422 1.2606 27 1 1.9682 1.0271 2.5057 28 1 0.4674 0.0703 2.4907 29 1 3.9215 0.1964 -1.2871 30 1 3.8088 -1.2430 -0.2452 31 1 3.5920 -2.6993 -2.2002 32 1 5.0298 -1.6666 -2.4167 33 1 6.2844 -3.2972 -4.3764 34 1 1.3777 -1.8233 -3.6098 35 1 1.6742 -0.3391 -4.5531 36 1 0.4609 0.0816 -2.3766 37 1 2.0079 0.9533 -2.5054 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:50 Heat of formation + Delta-G solvation = 51.970432 kcal Electronic energy + Delta-G solvation = -17080.005243 eV Core-core repulsion = 14472.067732 eV Total energy + Delta-G solvation = -2607.937510 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.83125 -36.95963 -35.44758 -33.13281 -31.08088 -30.41686 -28.93242 -26.29448 -25.05016 -22.86062 -22.11503 -20.01400 -19.10577 -17.87022 -16.71695 -15.62286 -15.30270 -14.65006 -14.56283 -14.05870 -13.70643 -13.45178 -13.40171 -13.15957 -12.79687 -12.55247 -12.40924 -12.18465 -11.59308 -11.44643 -11.28763 -11.08306 -10.88542 -10.65337 -10.64360 -10.38031 -10.24332 -10.01619 -9.65565 -9.54837 -8.49742 -7.79274 -6.59557 -5.76553 -3.22480 2.64577 2.68307 3.37807 3.44495 3.45824 3.83768 4.31014 4.50502 4.82421 4.99236 5.06530 5.28542 5.29814 5.42276 5.45800 5.47594 5.74994 5.88663 5.89673 5.95603 6.01586 6.15578 6.20397 6.25570 6.33004 6.42902 6.58225 6.74038 6.96240 7.27729 7.45506 7.64937 7.68716 7.73842 7.83668 8.47545 9.23832 9.85771 10.45964 11.31957 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.036293 B = 0.005443 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.312951 B = 5142.816053 C = 5679.043692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.037 0.963 4 C -0.114 4.114 5 C -0.028 4.028 6 C 0.210 3.790 7 N -0.446 5.446 8 N -0.528 5.528 9 C 0.030 3.970 10 C 0.179 3.821 11 N -0.595 5.595 12 C -0.253 4.253 13 H 0.064 0.936 14 C 0.004 3.996 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.148 3.852 21 C 0.042 3.958 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.025 0.975 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 7.292 8.760 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.068 4.068 6 C -0.107 4.107 7 N -0.123 5.123 8 N -0.253 5.253 9 C -0.099 4.099 10 C 0.053 3.947 11 N -0.319 5.319 12 C -0.383 4.383 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.549 5.549 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.022 3.978 21 C -0.087 4.087 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.772 5.861 10.110 14.612 hybrid contribution 0.940 1.254 -1.009 1.864 sum -7.832 7.115 9.101 13.957 Atomic orbital electron populations 1.21981 0.94723 1.02674 1.01345 1.21546 0.95380 0.95382 0.90580 0.94487 1.21682 1.02051 1.00381 0.91137 1.19431 1.02935 0.98394 0.86078 1.29302 0.93266 0.93741 0.94417 1.81222 1.09284 1.09650 1.12097 1.61998 1.11504 1.51091 1.00714 1.23000 0.86084 0.99777 1.01032 1.20840 0.98997 0.92975 0.81861 1.44083 1.01168 1.75953 1.10682 1.19188 1.04824 1.11206 1.03091 0.91825 1.25128 1.00554 0.95117 0.98671 1.69992 1.27835 1.13488 1.43572 0.86276 0.81634 0.77521 0.81221 1.21489 1.21693 1.20452 1.20990 0.86737 0.96221 0.93895 1.22677 0.98530 0.96131 0.91351 0.91653 0.92467 0.92312 0.90540 0.90080 0.87556 0.87160 0.95786 0.91710 0.95582 0.89642 0.93610 0.95731 0.92762 0.91570 0.95604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.65 37.16 0.32 -1.10 16 2 C 0.08 0.93 2.19 -67.71 -0.15 0.79 16 3 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -1.15 4.38 -26.73 -0.12 -1.27 16 5 C -0.03 -0.20 5.44 -29.52 -0.16 -0.36 16 6 C 0.21 2.24 15.43 -20.76 -0.32 1.92 16 7 N -0.45 -6.21 18.54 42.15 0.78 -5.43 16 8 N -0.53 -8.59 4.50 -226.34 -1.02 -9.61 16 9 C 0.03 0.56 5.32 -3.69 -0.02 0.54 16 10 C 0.18 4.27 5.37 -3.60 -0.02 4.25 16 11 N -0.60 -14.95 3.03 -172.01 -0.52 -15.47 16 12 C -0.25 -6.94 9.62 -15.06 -0.14 -7.09 16 13 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 14 C 0.00 0.11 5.02 -17.43 -0.09 0.02 16 15 N -0.90 -26.25 11.13 55.49 0.62 -25.63 16 16 Si 0.90 21.61 29.57 -169.99 -5.03 16.58 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 21 C 0.04 0.72 5.39 -3.70 -0.02 0.70 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.38 6.41 -51.93 -0.33 0.05 16 24 H 0.06 0.58 6.25 -51.93 -0.32 0.26 16 25 H 0.08 0.87 6.12 -51.93 -0.32 0.55 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.11 0.56 6.35 -51.93 -0.33 0.23 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 1.08 5.81 -51.93 -0.30 0.78 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.27 6.24 -51.93 -0.32 1.94 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 1.09 7.95 -51.93 -0.41 0.68 16 36 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 293.97 15.07 4.43 4.43 Total: -1.00 -31.29 293.97 -7.06 -38.35 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.58 Total: -4.69 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.74 Total: 1.46 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.14 Total: -56.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.29 -7.06 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.322 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds