Wall clock time and date at job start Mon Mar 30 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47563 * 2 1 4 4 C 1.52999 * 109.46977 * 120.00125 * 2 1 3 5 5 C 1.53001 * 109.47242 * 298.73597 * 4 2 1 6 6 C 1.47203 * 109.47085 * 177.89790 * 5 4 2 7 7 N 4.86625 * 99.70111 * 105.24287 * 2 1 3 8 8 N 1.46904 * 109.46923 * 239.99782 * 2 1 3 9 9 C 1.46907 * 110.99706 * 184.08027 * 8 2 1 10 10 C 1.53244 * 109.33647 * 172.74794 * 9 8 2 11 11 N 1.47080 * 108.52050 * 53.83207 * 10 9 8 12 12 C 1.36937 * 120.88317 * 128.83532 * 11 10 9 13 13 H 1.07998 * 120.00293 * 210.08261 * 12 11 10 14 14 C 1.38807 * 119.99656 * 30.08153 * 12 11 10 15 15 N 1.31626 * 120.00307 * 12.40564 * 14 12 11 16 16 Si 1.86800 * 120.00017 * 192.40400 * 14 12 11 17 17 H 1.48502 * 109.47289 * 89.99828 * 16 14 12 18 18 H 1.48502 * 109.47434 * 210.00219 * 16 14 12 19 19 H 1.48503 * 109.47153 * 330.00189 * 16 14 12 20 20 C 1.47083 * 118.23714 * 308.81016 * 11 10 9 21 21 C 1.46894 * 110.99754 * 59.78078 * 8 2 1 22 22 H 1.08996 * 109.47563 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47244 * 300.00232 * 1 2 3 24 24 H 1.09003 * 109.47255 * 59.99977 * 1 2 3 25 25 H 1.09004 * 109.47416 * 178.73535 * 4 2 1 26 26 H 1.08998 * 109.47361 * 58.74149 * 4 2 1 27 27 H 1.08994 * 109.46889 * 297.90000 * 5 4 2 28 28 H 1.08999 * 109.46917 * 57.90161 * 5 4 2 29 29 H 1.09004 * 109.48982 * 292.70615 * 9 8 2 30 30 H 1.08994 * 109.49173 * 52.79168 * 9 8 2 31 31 H 1.08994 * 109.62923 * 294.12060 * 10 9 8 32 32 H 1.08996 * 109.62198 * 173.53806 * 10 9 8 33 33 H 0.97000 * 119.99969 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.63037 * 291.48217 * 20 11 10 35 35 H 1.08996 * 109.62802 * 170.89481 * 20 11 10 36 36 H 1.08998 * 109.49761 * 307.20698 * 21 8 2 37 37 H 1.08997 * 109.49553 * 67.29263 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5561 0.0181 2.4983 6 6 2.0042 -0.7039 3.7003 7 7 2.3500 -1.2611 4.6279 8 7 2.0196 -0.6926 -1.1995 9 6 3.4849 -0.7972 -1.1856 10 6 3.9417 -1.6784 -2.3532 11 7 3.3684 -1.1408 -3.5964 12 6 4.1604 -0.8909 -4.6852 13 1 3.8997 -0.0997 -5.3724 14 6 5.2983 -1.6547 -4.9055 15 7 5.4893 -2.7634 -4.2221 16 14 6.5585 -1.1093 -6.1718 17 1 7.5705 -0.2393 -5.5203 18 1 7.2290 -2.3021 -6.7487 19 1 5.8780 -0.3525 -7.2533 20 6 1.9216 -0.8791 -3.6393 21 6 1.5443 -0.0295 -2.4210 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 3.1297 -0.7410 1.2380 26 1 1.6583 -1.7422 1.2606 27 1 1.9682 1.0271 2.5057 28 1 0.4674 0.0703 2.4907 29 1 3.9215 0.1964 -1.2871 30 1 3.8088 -1.2430 -0.2452 31 1 3.5920 -2.6993 -2.2002 32 1 5.0298 -1.6666 -2.4167 33 1 6.2844 -3.2972 -4.3764 34 1 1.3777 -1.8233 -3.6098 35 1 1.6742 -0.3391 -4.5531 36 1 0.4609 0.0816 -2.3766 37 1 2.0079 0.9533 -2.5054 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:50 Heat of formation + Delta-G solvation = 31.147441 kcal Electronic energy + Delta-G solvation = -17080.908195 eV Core-core repulsion = 14472.067732 eV Total energy + Delta-G solvation = -2608.840463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09602 -37.99751 -36.85314 -34.58133 -32.75035 -31.89780 -30.14430 -27.85915 -26.20862 -24.57212 -23.62103 -21.20928 -20.58844 -18.91938 -18.38310 -16.95462 -16.36282 -16.28001 -15.74891 -15.28207 -15.25611 -15.02983 -14.90324 -14.45848 -13.96291 -13.74715 -13.47214 -13.22193 -13.00680 -12.79573 -12.68538 -12.33041 -12.30457 -12.07642 -12.03754 -11.95560 -11.83732 -11.45059 -11.26104 -11.05847 -10.57678 -9.11675 -8.59568 -7.85505 -5.35225 1.47344 1.47853 1.57307 1.81754 1.88501 2.51351 2.99803 3.22675 3.31129 3.73641 4.07050 4.15664 4.24628 4.43772 4.45983 4.54247 4.62165 4.68379 4.74524 4.77184 4.82363 4.94738 5.05232 5.13728 5.19517 5.22532 5.28935 5.41965 5.46483 5.61975 5.63468 5.73541 6.30350 6.42289 6.47053 6.68064 7.16350 7.86635 8.41713 9.20547 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.036293 B = 0.005443 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.312951 B = 5142.816053 C = 5679.043692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.050 0.950 4 C -0.110 4.110 5 C -0.017 4.017 6 C 0.237 3.763 7 N -0.511 5.511 8 N -0.540 5.540 9 C 0.049 3.951 10 C 0.186 3.814 11 N -0.615 5.615 12 C -0.265 4.265 13 H 0.066 0.934 14 C -0.050 4.050 15 N -0.938 5.938 16 Si 0.969 3.031 17 H -0.284 1.284 18 H -0.295 1.295 19 H -0.267 1.267 20 C 0.141 3.859 21 C 0.056 3.944 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.019 0.981 30 H 0.083 0.917 31 H -0.006 1.006 32 H 0.050 0.950 33 H 0.249 0.751 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 9.491 9.366 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.150 4.150 5 C -0.057 4.057 6 C -0.079 4.079 7 N -0.189 5.189 8 N -0.266 5.266 9 C -0.080 4.080 10 C 0.060 3.940 11 N -0.339 5.339 12 C -0.395 4.395 13 H 0.084 0.916 14 C -0.245 4.245 15 N -0.584 5.584 16 Si 0.797 3.203 17 H -0.211 1.211 18 H -0.222 1.222 19 H -0.192 1.192 20 C 0.016 3.984 21 C -0.073 4.073 22 H 0.076 0.924 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.037 0.963 30 H 0.101 0.899 31 H 0.012 0.988 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.419 8.086 10.726 17.000 hybrid contribution 1.363 0.557 -1.228 1.917 sum -9.055 8.643 9.499 15.714 Atomic orbital electron populations 1.21997 0.92445 1.02766 1.03203 1.21690 0.97043 0.95466 0.88553 0.93229 1.21584 1.01105 1.00206 0.92055 1.19616 1.04861 0.98569 0.82615 1.29919 0.91492 0.92359 0.94176 1.81254 1.11556 1.11723 1.14380 1.61927 1.09552 1.52657 1.02451 1.22611 0.88094 0.98153 0.99190 1.20596 0.96928 0.92647 0.83872 1.44380 1.02951 1.76032 1.10587 1.19545 1.05360 1.11000 1.03609 0.91588 1.25899 1.02511 0.95245 1.00853 1.70170 1.28186 1.14735 1.45310 0.85239 0.79095 0.76849 0.79083 1.21122 1.22181 1.19189 1.21172 0.84264 0.96484 0.96484 1.22487 1.00486 0.94580 0.89785 0.92446 0.88657 0.92472 0.92065 0.91233 0.84560 0.83892 0.96315 0.89875 0.98774 0.93152 0.94150 0.96934 0.92430 0.88080 0.95964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.65 71.98 0.62 -1.46 16 2 C 0.08 1.58 2.19 44.91 0.10 1.67 16 3 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.91 4.38 30.59 0.13 -1.77 16 5 C -0.02 -0.17 5.44 28.79 0.16 -0.01 16 6 C 0.24 4.49 15.43 89.44 1.38 5.87 16 7 N -0.51 -13.80 18.54 20.01 0.37 -13.43 16 8 N -0.54 -16.57 4.50 -870.00 -3.91 -20.48 16 9 C 0.05 1.79 5.32 86.38 0.46 2.25 16 10 C 0.19 9.16 5.37 86.35 0.46 9.62 16 11 N -0.62 -31.50 3.03 -698.12 -2.11 -33.61 16 12 C -0.26 -14.75 9.62 84.03 0.81 -13.94 16 13 H 0.07 3.56 7.86 -2.91 -0.02 3.54 16 14 C -0.05 -2.81 5.02 84.86 0.43 -2.39 16 15 N -0.94 -56.43 11.13 21.65 0.24 -56.19 16 16 Si 0.97 45.09 29.57 68.60 2.03 47.12 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 C 0.14 5.87 6.69 86.35 0.58 6.45 16 21 C 0.06 1.76 5.39 86.39 0.47 2.22 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.09 0.66 6.41 -2.38 -0.02 0.65 16 24 H 0.06 0.86 6.25 -2.39 -0.01 0.84 16 25 H 0.06 1.25 6.12 -2.39 -0.01 1.24 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.14 0.59 6.35 -2.39 -0.02 0.58 16 29 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 2.73 5.81 -2.39 -0.01 2.71 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.05 2.80 6.24 -2.39 -0.01 2.79 16 33 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 36 H 0.10 2.52 5.94 -2.39 -0.01 2.50 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.50 293.97 3.26 -68.24 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.05 Total: -0.16 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.59 Total: 8.51 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -5.41 Total: -123.71 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.50 3.26 -68.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.392 kcal (2) G-P(sol) polarization free energy of solvation -71.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds