Wall clock time and date at job start Mon Mar 30 2020 04:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47145 * 2 1 4 4 C 1.34952 * 126.04136 * 124.99913 * 3 2 1 5 5 C 1.35313 * 107.75084 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.03935 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00100 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46917 * 324.99892 * 8 7 6 10 10 C 1.52993 * 109.47269 * 84.99904 * 8 7 6 11 11 C 1.53001 * 109.47087 * 205.00123 * 8 7 6 12 12 C 1.50698 * 109.47216 * 64.99354 * 11 8 7 13 13 H 1.07999 * 120.00119 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99942 * 179.97438 * 12 11 8 15 15 N 1.31518 * 120.00209 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47261 * 60.00176 * 16 14 12 18 18 H 1.48499 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47160 * 300.00320 * 16 14 12 20 20 C 1.39865 * 107.91976 * 0.26416 * 5 4 3 21 21 N 1.30839 * 108.20081 * 359.55311 * 20 5 4 22 22 H 1.08996 * 109.47181 * 299.99827 * 1 2 3 23 23 H 1.08994 * 109.46990 * 60.00148 * 1 2 3 24 24 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46777 * 239.99838 * 2 1 3 26 26 H 1.08999 * 109.47326 * 120.00193 * 2 1 3 27 27 H 1.08005 * 126.12242 * 0.04414 * 4 3 2 28 28 H 1.09001 * 109.47558 * 330.00263 * 6 5 4 29 29 H 1.08998 * 109.47216 * 209.99925 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09000 * 109.47161 * 60.00137 * 10 8 7 32 32 H 1.09006 * 109.47343 * 180.02562 * 10 8 7 33 33 H 1.09004 * 109.47587 * 300.00069 * 10 8 7 34 34 H 1.08994 * 109.47082 * 184.99888 * 11 8 7 35 35 H 1.08999 * 109.46730 * 304.99823 * 11 8 7 36 36 H 0.96998 * 119.99857 * 179.97438 * 15 14 12 37 37 H 1.07995 * 125.90143 * 179.73893 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0713 3.2138 0.5463 6 6 3.9548 4.1999 1.2660 7 7 5.3112 4.1426 0.7046 8 6 6.2025 5.0924 1.3838 9 1 5.6419 5.9873 1.6538 10 6 6.7695 4.4448 2.6486 11 6 7.3508 5.4733 0.4472 12 6 6.8029 6.2205 -0.7413 13 1 5.7419 6.4056 -0.8205 14 6 7.6564 6.6687 -1.7271 15 7 8.9486 6.4437 -1.6304 16 14 6.9773 7.5956 -3.1999 17 1 6.2879 8.8261 -2.7356 18 1 8.0918 7.9651 -4.1090 19 1 6.0123 6.7318 -3.9264 20 6 2.3069 3.4744 -0.5956 21 7 1.6801 2.3749 -0.9275 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.3193 1.4125 1.7357 28 1 3.9897 3.9501 2.3264 29 1 3.5527 5.2054 1.1426 30 1 5.2978 4.3072 -0.2908 31 1 7.3301 3.5499 2.3786 32 1 7.4305 5.1497 3.1528 33 1 5.9514 4.1734 3.3159 34 1 8.0592 6.1075 0.9801 35 1 7.8567 4.5699 0.1066 36 1 9.5489 6.7588 -2.3241 37 1 2.2470 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:31 Heat of formation + Delta-G solvation = 40.747921 kcal Electronic energy + Delta-G solvation = -16493.364965 eV Core-core repulsion = 13884.940810 eV Total energy + Delta-G solvation = -2608.424155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06453 -38.17699 -35.51249 -34.72242 -32.84605 -31.11273 -29.68024 -29.19498 -25.78345 -24.83116 -24.27607 -21.57339 -21.07391 -20.85864 -18.47757 -17.81402 -16.74264 -16.44099 -16.19452 -15.78152 -15.33085 -14.91275 -14.67471 -14.23320 -13.82159 -13.55201 -13.36437 -13.24204 -13.08621 -13.07218 -12.91429 -12.55671 -12.41160 -12.38240 -12.15091 -12.01194 -11.34069 -11.20508 -10.96710 -10.54751 -10.29259 -9.34932 -9.01077 -8.17107 -6.26971 1.02446 1.40598 1.42810 1.50109 1.71334 1.86395 2.41986 3.15566 3.61777 3.75063 4.04998 4.12494 4.19976 4.36278 4.39748 4.44731 4.55860 4.68518 4.79172 4.82216 4.83268 4.88356 5.01746 5.10749 5.24835 5.28184 5.32442 5.39650 5.55223 5.60342 5.73761 5.88305 6.23856 6.24725 6.54081 6.71307 6.79754 6.88529 7.41589 8.94442 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025794 B = 0.005453 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.273109 B = 5133.125461 C = 5899.695695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 N -0.376 5.376 4 C 0.077 3.923 5 C -0.247 4.247 6 C 0.142 3.858 7 N -0.681 5.681 8 C 0.094 3.906 9 H 0.025 0.975 10 C -0.126 4.126 11 C 0.028 3.972 12 C -0.533 4.533 13 H 0.057 0.943 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.269 1.269 20 C 0.038 3.962 21 N -0.330 5.330 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.203 0.797 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.339 0.661 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.065 0.935 34 H -0.005 1.005 35 H -0.005 1.005 36 H 0.262 0.738 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -11.971 6.925 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.159 5.159 4 C -0.070 4.070 5 C -0.258 4.258 6 C 0.013 3.987 7 N -0.313 5.313 8 C -0.016 4.016 9 H 0.043 0.957 10 C -0.184 4.184 11 C -0.010 4.010 12 C -0.571 4.571 13 H 0.076 0.924 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.147 4.147 21 N -0.152 5.152 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.119 0.881 25 H 0.104 0.896 26 H 0.145 0.855 27 H 0.220 0.780 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.157 0.843 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.071 0.929 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.726 -13.192 6.405 21.503 hybrid contribution 0.457 1.984 -0.870 2.214 sum -15.269 -11.209 5.534 19.734 Atomic orbital electron populations 1.21999 0.93455 1.03956 1.02106 1.22044 0.96376 0.76038 1.05454 1.48982 1.35571 1.10825 1.20521 1.22749 0.93825 0.93933 0.96523 1.20099 1.07398 0.96468 1.01881 1.20122 0.86249 0.94363 0.98011 1.60701 1.08491 1.53314 1.08795 1.21447 0.93711 0.91990 0.94463 0.95671 1.21696 1.00437 1.00160 0.96086 1.19134 0.93630 0.94639 0.93574 1.21524 0.93681 1.35601 1.06310 0.92436 1.25867 0.95049 0.97134 1.01268 1.70088 1.03791 1.47799 1.35509 0.85614 0.77912 0.79190 0.79013 1.19336 1.21069 1.19381 1.24001 0.96276 0.97749 0.96715 1.77191 1.25481 0.97534 1.14963 0.92674 0.93413 0.88123 0.89648 0.85467 0.78035 0.89747 0.95827 0.84264 0.93332 0.93097 0.91556 0.98714 0.98679 0.92897 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.10 71.98 0.73 -1.43 16 2 C 0.12 1.81 7.23 86.38 0.62 2.44 16 3 N -0.38 -9.20 3.68 -348.07 -1.28 -10.48 16 4 C 0.08 1.88 11.36 83.54 0.95 2.83 16 5 C -0.25 -7.25 5.61 -20.15 -0.11 -7.37 16 6 C 0.14 4.41 5.96 85.55 0.51 4.92 16 7 N -0.68 -26.13 6.30 -495.58 -3.12 -29.25 16 8 C 0.09 3.88 2.59 44.91 0.12 3.99 16 9 H 0.03 1.06 7.80 -2.39 -0.02 1.04 16 10 C -0.13 -4.32 9.41 71.98 0.68 -3.65 16 11 C 0.03 1.46 4.57 29.85 0.14 1.59 16 12 C -0.53 -29.95 8.12 25.60 0.21 -29.74 16 13 H 0.06 3.10 7.49 -2.91 -0.02 3.08 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 16 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.04 1.18 11.96 85.23 1.02 2.20 16 21 N -0.33 -10.17 12.42 -57.03 -0.71 -10.88 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.13 1.06 8.07 -2.39 -0.02 1.04 16 27 H 0.20 3.43 8.06 -2.91 -0.02 3.40 16 28 H 0.08 2.28 7.43 -2.39 -0.02 2.27 16 29 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 30 H 0.34 14.83 7.20 -89.69 -0.65 14.18 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.88 7.45 -2.39 -0.02 1.86 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.18 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -68.65 311.98 2.91 -65.75 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.39 Total: 18.38 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 5.32 Total: -23.46 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.82 Total: -107.40 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.65 2.91 -65.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.494 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds