Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 C 1.53004 * 109.47323 * 240.00522 * 2 1 3 5 5 C 1.50701 * 109.47401 * 174.99810 * 4 2 1 6 6 H 1.08000 * 120.00087 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46706 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47218 * 120.00206 * 9 7 5 12 12 H 1.48498 * 109.47314 * 240.00295 * 9 7 5 13 13 N 1.46901 * 109.47333 * 120.00334 * 2 1 3 14 14 C 1.46890 * 110.99991 * 275.00295 * 13 2 1 15 15 C 1.53004 * 109.47274 * 179.97438 * 14 13 2 16 16 C 1.50698 * 109.47271 * 179.97438 * 15 14 13 17 17 C 1.34675 * 125.98702 * 124.99981 * 16 15 14 18 18 N 1.36881 * 106.81313 * 179.97438 * 17 16 15 19 19 C 1.46506 * 126.39256 * 179.97438 * 18 17 16 20 20 C 1.35034 * 107.20901 * 0.26255 * 18 17 16 21 21 N 1.30503 * 108.70195 * 359.56520 * 20 18 17 22 22 H 1.08998 * 109.47173 * 299.99112 * 1 2 3 23 23 H 1.09000 * 109.47315 * 59.99775 * 1 2 3 24 24 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46812 * 294.99951 * 4 2 1 26 26 H 1.09001 * 109.46741 * 54.99773 * 4 2 1 27 27 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 28 28 H 1.00905 * 111.00111 * 151.04753 * 13 2 1 29 29 H 1.08993 * 109.47485 * 60.00087 * 14 13 2 30 30 H 1.09003 * 109.47442 * 299.99332 * 14 13 2 31 31 H 1.09002 * 109.47033 * 59.99700 * 15 14 13 32 32 H 1.09003 * 109.46810 * 300.00322 * 15 14 13 33 33 H 1.07999 * 126.59305 * 0.03441 * 17 16 15 34 34 H 1.09001 * 109.47060 * 90.00676 * 19 18 17 35 35 H 1.09004 * 109.47073 * 210.00165 * 19 18 17 36 36 H 1.09000 * 109.47212 * 330.00248 * 19 18 17 37 37 H 1.08005 * 125.65147 * 179.71017 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8375 -3.2997 9 14 6.0920 -1.0608 -2.4370 10 1 6.5836 -0.2905 -1.2664 11 1 6.6864 -2.4215 -2.4186 12 1 6.4861 -0.3655 -3.6886 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2224 2.3468 15 6 2.5950 -0.5334 3.5744 16 6 2.6600 0.4054 4.7514 17 6 2.0682 0.2182 5.9466 18 7 2.3826 1.3040 6.7185 19 6 1.9586 1.5398 8.1009 20 6 3.1512 2.1201 5.9659 21 7 3.3178 1.5736 4.7926 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2615 -2.1370 27 1 4.0608 -2.2442 -4.0352 28 1 2.9174 -1.1205 1.0286 29 1 1.0871 0.6160 2.5525 30 1 2.7588 1.0460 2.1183 31 1 3.5904 -0.9275 3.3690 32 1 1.9183 -1.3569 3.8028 33 1 1.4627 -0.6267 6.2399 34 1 2.6931 1.1133 8.7840 35 1 1.8774 2.6123 8.2781 36 1 0.9898 1.0694 8.2691 37 1 3.5623 3.0672 6.2832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = 45.048129 kcal Electronic energy + Delta-G solvation = -16301.266361 eV Core-core repulsion = 13693.028677 eV Total energy + Delta-G solvation = -2608.237684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05382 -36.71429 -34.55210 -32.97015 -31.85652 -29.67932 -27.90619 -27.28293 -26.06543 -23.16164 -21.93106 -21.14924 -19.92515 -19.16322 -17.05855 -16.25632 -15.81942 -15.15594 -14.71854 -14.49911 -14.08913 -13.89046 -13.57473 -13.07765 -12.98693 -12.75775 -12.32962 -11.78262 -11.69972 -11.28624 -11.06350 -10.99072 -10.75281 -10.51205 -10.38430 -10.04598 -9.82053 -9.56462 -9.10584 -8.95308 -8.33341 -8.30725 -7.47003 -5.94437 -3.96699 2.00436 2.69069 3.17382 3.35898 3.43512 3.48715 4.40232 4.51649 4.58746 4.76408 4.80088 5.00318 5.01530 5.36135 5.41840 5.66441 5.71426 5.95604 6.04535 6.12856 6.19048 6.33929 6.41194 6.54712 6.57416 6.71457 6.79519 7.04589 7.08084 7.14310 7.65269 7.74990 8.06292 8.12928 8.20616 8.42999 8.50021 9.10042 9.67328 11.16598 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.004649 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.795485 B = 6020.757842 C = 6667.098112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.686 5.686 14 C 0.070 3.930 15 C -0.034 4.034 16 C 0.017 3.983 17 C -0.062 4.062 18 N -0.469 5.469 19 C 0.075 3.925 20 C 0.176 3.824 21 N -0.485 5.485 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.259 0.741 28 H 0.353 0.647 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.173 0.827 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 5.600 21.963 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.320 5.320 14 C -0.060 4.060 15 C -0.073 4.073 16 C -0.112 4.112 17 C -0.194 4.194 18 N -0.153 5.153 19 C -0.068 4.068 20 C -0.106 4.106 21 N -0.203 5.203 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.190 0.810 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.459 5.608 21.470 22.634 hybrid contribution 1.353 0.362 0.470 1.477 sum -3.106 5.970 21.940 22.949 Atomic orbital electron populations 1.21785 0.96924 1.01160 0.99328 1.21584 0.93208 0.95944 0.91478 0.95371 1.19287 0.95410 0.96155 0.90863 1.21253 0.92294 1.34089 1.08218 0.92841 1.24987 0.98206 0.95254 0.95732 1.69979 1.35330 1.35916 1.12007 0.86586 0.86074 0.77736 0.77934 1.19728 1.21019 1.21123 1.60575 1.34596 1.32329 1.04481 1.21765 0.99483 0.94320 0.90421 1.19874 1.02010 0.95085 0.90283 1.20804 0.99900 0.95183 0.95344 1.22488 1.09017 0.94679 0.93207 1.45386 1.39738 1.17604 1.12601 1.21993 1.01488 1.03438 0.79858 1.24993 0.98769 0.98911 0.87959 1.70213 1.22390 1.08742 1.18967 0.94606 0.93480 0.92726 0.95615 0.96164 0.93106 0.82644 0.92448 0.95109 0.90884 0.90249 0.80992 0.90743 0.89612 0.89800 0.78124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.41 37.15 0.35 -2.23 16 2 C 0.09 1.95 2.59 -67.71 -0.18 1.77 16 3 H 0.03 0.66 7.80 -51.93 -0.41 0.25 16 4 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -14.85 8.12 -34.44 -0.28 -15.13 16 6 H 0.05 1.51 7.49 -52.49 -0.39 1.11 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.69 -14.13 6.31 -106.73 -0.67 -14.80 16 14 C 0.07 1.28 5.45 -3.83 -0.02 1.25 16 15 C -0.03 -0.53 6.04 -27.88 -0.17 -0.69 16 16 C 0.02 0.26 6.36 -82.85 -0.53 -0.27 16 17 C -0.06 -0.73 11.47 -16.56 -0.19 -0.92 16 18 N -0.47 -4.60 3.15 -125.99 -0.40 -4.99 16 19 C 0.08 0.35 11.18 59.85 0.67 1.02 16 20 C 0.18 2.03 12.56 -90.38 -1.14 0.90 16 21 N -0.48 -7.66 11.23 -10.87 -0.12 -7.79 16 22 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.35 7.82 7.21 -39.29 -0.28 7.53 16 29 H 0.06 1.03 7.43 -51.93 -0.39 0.64 16 30 H 0.03 0.62 8.06 -51.93 -0.42 0.20 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.20 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -33.67 311.16 -8.55 -42.22 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.06 Total: 2.29 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.70 Total: -12.25 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.46 Total: -54.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.67 -8.55 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.265 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds