Wall clock time and date at job start Mon Mar 30 2020 04:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 C 1.53004 * 109.47323 * 240.00522 * 2 1 3 5 5 C 1.50701 * 109.47401 * 174.99810 * 4 2 1 6 6 H 1.08000 * 120.00087 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99972 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00233 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46706 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47218 * 120.00206 * 9 7 5 12 12 H 1.48498 * 109.47314 * 240.00295 * 9 7 5 13 13 N 1.46901 * 109.47333 * 120.00334 * 2 1 3 14 14 C 1.46890 * 110.99991 * 275.00295 * 13 2 1 15 15 C 1.53004 * 109.47274 * 179.97438 * 14 13 2 16 16 C 1.50698 * 109.47271 * 179.97438 * 15 14 13 17 17 C 1.34675 * 125.98702 * 124.99981 * 16 15 14 18 18 N 1.36881 * 106.81313 * 179.97438 * 17 16 15 19 19 C 1.46506 * 126.39256 * 179.97438 * 18 17 16 20 20 C 1.35034 * 107.20901 * 0.26255 * 18 17 16 21 21 N 1.30503 * 108.70195 * 359.56520 * 20 18 17 22 22 H 1.08998 * 109.47173 * 299.99112 * 1 2 3 23 23 H 1.09000 * 109.47315 * 59.99775 * 1 2 3 24 24 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46812 * 294.99951 * 4 2 1 26 26 H 1.09001 * 109.46741 * 54.99773 * 4 2 1 27 27 H 0.97002 * 120.00237 * 179.97438 * 8 7 5 28 28 H 1.00905 * 111.00111 * 151.04753 * 13 2 1 29 29 H 1.08993 * 109.47485 * 60.00087 * 14 13 2 30 30 H 1.09003 * 109.47442 * 299.99332 * 14 13 2 31 31 H 1.09002 * 109.47033 * 59.99700 * 15 14 13 32 32 H 1.09003 * 109.46810 * 300.00322 * 15 14 13 33 33 H 1.07999 * 126.59305 * 0.03441 * 17 16 15 34 34 H 1.09001 * 109.47060 * 90.00676 * 19 18 17 35 35 H 1.09004 * 109.47073 * 210.00165 * 19 18 17 36 36 H 1.09000 * 109.47212 * 330.00248 * 19 18 17 37 37 H 1.08005 * 125.65147 * 179.71017 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8375 -3.2997 9 14 6.0920 -1.0608 -2.4370 10 1 6.5836 -0.2905 -1.2664 11 1 6.6864 -2.4215 -2.4186 12 1 6.4861 -0.3655 -3.6886 13 7 2.0197 -0.6926 1.1994 14 6 2.0824 0.2224 2.3468 15 6 2.5950 -0.5334 3.5744 16 6 2.6600 0.4054 4.7514 17 6 2.0682 0.2182 5.9466 18 7 2.3826 1.3040 6.7185 19 6 1.9586 1.5398 8.1009 20 6 3.1512 2.1201 5.9659 21 7 3.3178 1.5736 4.7926 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.7516 -1.7714 -1.2057 26 1 1.6053 -0.2615 -2.1370 27 1 4.0608 -2.2442 -4.0352 28 1 2.9174 -1.1205 1.0286 29 1 1.0871 0.6160 2.5525 30 1 2.7588 1.0460 2.1183 31 1 3.5904 -0.9275 3.3690 32 1 1.9183 -1.3569 3.8028 33 1 1.4627 -0.6267 6.2399 34 1 2.6931 1.1133 8.7840 35 1 1.8774 2.6123 8.2781 36 1 0.9898 1.0694 8.2691 37 1 3.5623 3.0672 6.2832 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:38 Heat of formation + Delta-G solvation = 23.467240 kcal Electronic energy + Delta-G solvation = -16302.202179 eV Core-core repulsion = 13693.028677 eV Total energy + Delta-G solvation = -2609.173502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.91741 -38.42162 -35.66466 -34.72894 -33.42142 -30.96735 -29.30270 -28.83549 -26.99495 -25.14586 -23.36345 -22.00752 -21.27020 -20.67150 -18.51473 -17.82461 -16.82494 -16.63030 -16.36627 -16.05783 -15.21021 -14.96667 -14.90663 -14.51608 -13.88451 -13.70740 -13.53672 -13.41422 -13.33857 -13.09576 -12.81683 -12.60073 -12.42046 -12.33879 -12.21143 -11.83472 -11.24194 -11.00007 -10.77185 -10.57419 -10.42067 -9.26785 -9.18302 -8.19163 -6.29390 1.16839 1.38909 1.39646 1.52812 2.03905 2.18616 2.40954 3.12018 3.45178 3.77958 4.01786 4.12824 4.24174 4.36731 4.38811 4.46528 4.49383 4.65067 4.75320 4.75832 4.79387 4.84201 4.98660 5.17210 5.19332 5.24431 5.33718 5.38527 5.50473 5.57533 5.82889 5.85657 6.22481 6.38100 6.42460 6.65923 6.85303 7.23282 7.39206 8.92682 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.004649 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.795485 B = 6020.757842 C = 6667.098112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.093 3.907 3 H 0.015 0.985 4 C 0.029 3.971 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.275 1.275 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.081 3.919 15 C -0.023 4.023 16 C -0.026 4.026 17 C -0.047 4.047 18 N -0.463 5.463 19 C 0.068 3.932 20 C 0.175 3.825 21 N -0.542 5.542 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.002 0.998 26 H -0.004 1.004 27 H 0.264 0.736 28 H 0.342 0.658 29 H 0.063 0.937 30 H 0.004 0.996 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.201 0.799 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 6.113 24.480 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 H 0.033 0.967 4 C -0.009 4.009 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.049 4.049 15 C -0.062 4.062 16 C -0.155 4.155 17 C -0.181 4.181 18 N -0.146 5.146 19 C -0.073 4.073 20 C -0.107 4.107 21 N -0.262 5.262 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.218 0.782 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.524 6.134 24.028 25.207 hybrid contribution 1.330 0.239 -0.234 1.372 sum -3.194 6.373 23.793 24.838 Atomic orbital electron populations 1.21685 0.94225 1.01627 1.00757 1.21447 0.95348 0.94497 0.90410 0.96685 1.19133 0.94759 0.94874 0.92089 1.21533 0.93387 1.34083 1.08310 0.93026 1.25863 1.03346 0.94745 0.95262 1.70094 1.37439 1.36694 1.12675 0.85468 0.79840 0.78066 0.78076 1.19273 1.20076 1.20403 1.60656 1.33722 1.32544 1.04453 1.21712 0.99228 0.93391 0.90520 1.19705 1.01259 0.95520 0.89713 1.20751 1.02540 0.95755 0.96408 1.22836 1.07565 0.95448 0.92246 1.45673 1.38449 1.16374 1.14067 1.22368 1.02570 1.05306 0.77048 1.25571 0.98269 0.99742 0.87145 1.70108 1.24365 1.09950 1.21727 0.92383 0.92845 0.92703 0.97997 0.98575 0.92737 0.83951 0.91833 0.97729 0.92491 0.88599 0.78211 0.89319 0.87500 0.88287 0.74944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 9.41 71.98 0.68 -4.07 16 2 C 0.09 4.21 2.59 44.91 0.12 4.33 16 3 H 0.02 0.72 7.80 -2.39 -0.02 0.70 16 4 C 0.03 1.58 4.57 29.85 0.14 1.72 16 5 C -0.54 -31.29 8.12 25.60 0.21 -31.08 16 6 H 0.05 2.98 7.49 -2.91 -0.02 2.95 16 7 C 0.01 0.35 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 9 Si 0.96 45.86 29.54 68.60 2.03 47.88 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.68 -28.53 6.31 -491.59 -3.10 -31.63 16 14 C 0.08 2.99 5.45 86.31 0.47 3.46 16 15 C -0.02 -0.73 6.04 29.85 0.18 -0.55 16 16 C -0.03 -0.76 6.36 41.39 0.26 -0.49 16 17 C -0.05 -0.99 11.47 83.09 0.95 -0.04 16 18 N -0.46 -7.76 3.15 -552.51 -1.74 -9.51 16 19 C 0.07 0.38 11.18 127.77 1.43 1.80 16 20 C 0.18 3.74 12.56 180.26 2.26 6.00 16 21 N -0.54 -17.00 11.23 -188.32 -2.12 -19.11 16 22 H 0.06 1.93 7.45 -2.39 -0.02 1.92 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.34 15.60 7.21 -89.69 -0.65 14.95 16 29 H 0.06 2.24 7.43 -2.39 -0.02 2.23 16 30 H 0.00 0.19 8.06 -2.39 -0.02 0.17 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 36 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.23 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.44 311.16 2.90 -71.54 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.39 Total: 16.14 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 7.16 Total: -18.09 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -6.67 Total: -117.47 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -74.44 2.90 -71.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.004 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds