Wall clock time and date at job start Mon Mar 30 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.46782 * 299.99917 * 14 13 12 16 16 C 1.53001 * 109.46862 * 59.99971 * 14 13 12 17 17 N 1.46500 * 109.46996 * 180.02562 * 14 13 12 18 18 C 1.34944 * 126.03491 * 164.71761 * 17 14 13 19 19 C 1.35321 * 107.74561 * 179.83982 * 18 17 14 20 20 C 1.39872 * 107.91739 * 0.42094 * 19 18 17 21 21 N 1.30841 * 108.20090 * 359.73884 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 27 27 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 28 28 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 29 29 H 1.09002 * 109.47033 * 60.00531 * 15 14 13 30 30 H 1.09000 * 109.46518 * 179.97438 * 15 14 13 31 31 H 1.08990 * 109.47343 * 299.99864 * 15 14 13 32 32 H 1.08994 * 109.46861 * 60.00391 * 16 14 13 33 33 H 1.09000 * 109.46519 * 180.02562 * 16 14 13 34 34 H 1.08998 * 109.47032 * 299.99642 * 16 14 13 35 35 H 1.07998 * 126.12987 * 359.97438 * 18 17 14 36 36 H 1.07993 * 126.04340 * 180.16087 * 19 18 17 37 37 H 1.07997 * 125.90139 * 179.72103 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 6 1.6452 -1.6889 3.8952 16 6 3.9922 -1.0863 3.2862 17 7 2.6572 0.3793 4.7190 18 6 2.7789 0.0210 6.0142 19 6 2.8027 1.1532 6.7549 20 6 2.6819 2.2403 5.8831 21 7 2.5946 1.7775 4.6624 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 1.5986 -2.3679 3.0438 30 1 2.0106 -2.2275 4.7695 31 1 0.6500 -1.2948 4.1006 32 1 4.6689 -0.2629 3.0577 33 1 4.3572 -1.6251 4.1606 34 1 3.9455 -1.7653 2.4348 35 1 2.8476 -0.9885 6.3919 36 1 2.8941 1.2077 7.8296 37 1 2.6635 3.2818 6.1683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697565065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:19 Heat of formation + Delta-G solvation = 76.236114 kcal Electronic energy + Delta-G solvation = -17133.088337 eV Core-core repulsion = 14526.203066 eV Total energy + Delta-G solvation = -2606.885272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10559 -37.45606 -34.82741 -32.17729 -30.23097 -29.62695 -28.13864 -27.30371 -25.24228 -24.63034 -22.09941 -20.63842 -20.20683 -19.03829 -16.99212 -16.18059 -15.16656 -14.87293 -14.45834 -14.32288 -13.87508 -13.54142 -13.18381 -12.91664 -12.63180 -12.51375 -12.04292 -11.94994 -11.58367 -11.49395 -11.18294 -11.01915 -10.84879 -10.68918 -10.47423 -10.27414 -10.14937 -9.86178 -9.25282 -9.00566 -8.45859 -8.36327 -7.31003 -5.98224 -4.01981 2.09302 2.65648 2.99147 3.32459 3.39075 3.43215 4.40984 4.54886 4.87549 4.94832 5.08888 5.09376 5.33415 5.39660 5.55131 5.59064 5.79716 5.81778 5.91094 6.00105 6.07549 6.10945 6.25624 6.45304 6.46370 6.69157 6.81529 6.82995 7.08111 7.24016 7.35665 7.72230 7.85702 7.91890 8.25127 8.47598 8.57351 9.04559 9.63243 11.08896 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.005313 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.297005 B = 5268.399114 C = 5459.325115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.073 3.927 14 C 0.181 3.819 15 C -0.159 4.159 16 C -0.144 4.144 17 N -0.352 5.352 18 C 0.052 3.948 19 C -0.284 4.284 20 C 0.032 3.968 21 N -0.287 5.287 22 H 0.090 0.910 23 H 0.004 0.996 24 H 0.027 0.973 25 H 0.260 0.740 26 H 0.323 0.677 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.141 0.859 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -3.142 15.904 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.057 4.057 14 C 0.098 3.902 15 C -0.217 4.217 16 C -0.202 4.202 17 N -0.135 5.135 18 C -0.095 4.095 19 C -0.314 4.314 20 C -0.154 4.154 21 N -0.108 5.108 22 H 0.108 0.892 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.819 -2.731 14.212 14.744 hybrid contribution -0.671 -0.447 0.378 0.890 sum 2.148 -3.178 14.591 15.086 Atomic orbital electron populations 1.22427 1.00666 0.99116 1.00586 1.19166 0.89609 0.94559 0.86103 0.94734 1.21123 1.30327 1.12438 0.89510 0.91906 1.24955 0.95353 0.95177 0.99061 1.69890 1.37275 1.23097 1.23363 0.86501 0.79200 0.79205 0.82488 1.20871 1.21385 1.19880 1.60911 1.58028 1.08916 1.03170 1.21859 0.99349 0.95595 0.88932 1.20849 0.97601 0.87642 0.84069 1.22246 0.98978 0.97500 1.03019 1.22099 0.93866 1.01972 1.02278 1.49143 1.54226 1.04642 1.05495 1.22407 1.02032 1.00265 0.84816 1.21428 1.18049 0.91452 1.00450 1.23846 1.01029 1.00111 0.90424 1.77438 1.23010 0.88480 1.21908 0.89183 0.97665 0.95377 0.93048 0.85937 0.90271 0.95522 0.89216 0.92063 0.92017 0.92051 0.93325 0.88613 0.81609 0.84086 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.94 37.16 0.33 -3.76 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.17 16 3 H 0.03 0.98 7.80 -51.93 -0.40 0.57 16 4 C -0.50 -13.56 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.79 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.68 -13.91 5.44 -107.94 -0.59 -14.49 16 13 C 0.07 1.37 4.06 -3.82 -0.02 1.35 16 14 C 0.18 2.70 1.06 -131.82 -0.14 2.56 16 15 C -0.16 -1.96 7.96 37.16 0.30 -1.66 16 16 C -0.14 -2.03 8.57 37.16 0.32 -1.71 16 17 N -0.35 -5.30 3.43 -48.65 -0.17 -5.47 16 18 C 0.05 0.64 10.60 -17.22 -0.18 0.46 16 19 C -0.28 -3.38 10.80 -40.01 -0.43 -3.81 16 20 C 0.03 0.43 12.03 -17.36 -0.21 0.22 16 21 N -0.29 -4.81 11.66 30.63 0.36 -4.46 16 22 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 23 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.32 6.10 6.51 -39.29 -0.26 5.84 16 27 H 0.08 1.67 7.96 -51.93 -0.41 1.25 16 28 H 0.03 0.54 7.44 -51.93 -0.39 0.15 16 29 H 0.09 1.09 6.57 -51.93 -0.34 0.75 16 30 H 0.06 0.60 7.36 -51.93 -0.38 0.22 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 1.40 7.60 -51.93 -0.39 1.01 16 35 H 0.17 1.49 7.54 -52.49 -0.40 1.09 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 300.55 15.07 4.53 4.53 Total: -1.00 -30.09 300.55 -6.63 -36.72 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.76 Total: 5.55 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.61 Total: -13.61 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.23 Total: -49.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.09 -6.63 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697565065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.952 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds