Wall clock time and date at job start Mon Mar 30 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.46782 * 299.99917 * 14 13 12 16 16 C 1.53001 * 109.46862 * 59.99971 * 14 13 12 17 17 N 1.46500 * 109.46996 * 180.02562 * 14 13 12 18 18 C 1.34944 * 126.03491 * 164.71761 * 17 14 13 19 19 C 1.35321 * 107.74561 * 179.83982 * 18 17 14 20 20 C 1.39872 * 107.91739 * 0.42094 * 19 18 17 21 21 N 1.30841 * 108.20090 * 359.73884 * 20 19 18 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 26 26 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 27 27 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 28 28 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 29 29 H 1.09002 * 109.47033 * 60.00531 * 15 14 13 30 30 H 1.09000 * 109.46518 * 179.97438 * 15 14 13 31 31 H 1.08990 * 109.47343 * 299.99864 * 15 14 13 32 32 H 1.08994 * 109.46861 * 60.00391 * 16 14 13 33 33 H 1.09000 * 109.46519 * 180.02562 * 16 14 13 34 34 H 1.08998 * 109.47032 * 299.99642 * 16 14 13 35 35 H 1.07998 * 126.12987 * 359.97438 * 18 17 14 36 36 H 1.07993 * 126.04340 * 180.16087 * 19 18 17 37 37 H 1.07997 * 125.90139 * 179.72103 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 6 1.6452 -1.6889 3.8952 16 6 3.9922 -1.0863 3.2862 17 7 2.6572 0.3793 4.7190 18 6 2.7789 0.0210 6.0142 19 6 2.8027 1.1532 6.7549 20 6 2.6819 2.2403 5.8831 21 7 2.5946 1.7775 4.6624 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1613 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 2.7589 1.0461 2.1182 28 1 1.0871 0.6164 2.5525 29 1 1.5986 -2.3679 3.0438 30 1 2.0106 -2.2275 4.7695 31 1 0.6500 -1.2948 4.1006 32 1 4.6689 -0.2629 3.0577 33 1 4.3572 -1.6251 4.1606 34 1 3.9455 -1.7653 2.4348 35 1 2.8476 -0.9885 6.3919 36 1 2.8941 1.2077 7.8296 37 1 2.6635 3.2818 6.1683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697565065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:19 Heat of formation + Delta-G solvation = 56.697243 kcal Electronic energy + Delta-G solvation = -17133.935606 eV Core-core repulsion = 14526.203066 eV Total energy + Delta-G solvation = -2607.732541 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.13995 -38.90042 -36.50704 -34.09228 -31.47291 -30.67902 -29.79536 -28.35100 -27.29280 -26.19159 -23.30256 -22.16628 -21.61011 -20.19810 -18.54034 -17.80145 -16.73327 -16.47829 -15.88389 -15.61785 -15.18913 -14.88987 -14.62914 -14.30357 -14.06009 -13.67645 -13.47635 -13.22620 -13.00218 -12.90838 -12.87120 -12.68229 -12.48831 -12.23752 -12.16639 -12.08723 -11.78348 -11.37021 -11.05044 -10.49816 -10.32970 -9.44760 -9.08367 -8.10149 -6.22121 1.10589 1.44025 1.45084 1.55911 1.61490 2.03890 2.44145 3.18639 3.25959 3.68518 3.89238 3.91464 4.06179 4.19411 4.50971 4.59132 4.62623 4.66466 4.72072 4.82369 4.83397 4.87739 4.94069 4.99266 5.04757 5.19300 5.21551 5.31484 5.35512 5.66473 5.75936 5.85488 6.22214 6.26824 6.54408 6.76584 6.89829 6.92281 7.47962 8.96085 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.005313 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.297005 B = 5268.399114 C = 5459.325115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H -0.008 1.008 4 C -0.512 4.512 5 H 0.062 0.938 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.670 5.670 13 C 0.085 3.915 14 C 0.186 3.814 15 C -0.154 4.154 16 C -0.138 4.138 17 N -0.367 5.367 18 C 0.054 3.946 19 C -0.284 4.284 20 C 0.027 3.973 21 N -0.350 5.350 22 H 0.062 0.938 23 H 0.016 0.984 24 H 0.039 0.961 25 H 0.260 0.740 26 H 0.337 0.663 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.205 0.795 36 H 0.172 0.828 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -5.192 17.584 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.010 0.990 4 C -0.550 4.550 5 H 0.080 0.920 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.192 1.192 12 N -0.302 5.302 13 C -0.045 4.045 14 C 0.103 3.897 15 C -0.212 4.212 16 C -0.196 4.196 17 N -0.151 5.151 18 C -0.092 4.092 19 C -0.314 4.314 20 C -0.158 4.158 21 N -0.172 5.172 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.156 0.844 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.222 0.778 36 H 0.190 0.810 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.246 -4.792 15.922 16.941 hybrid contribution -0.792 0.265 -0.047 0.836 sum 2.454 -4.527 15.875 16.689 Atomic orbital electron populations 1.22230 0.99983 0.99509 0.99723 1.18914 0.90032 0.92493 0.87688 0.99016 1.21419 1.30482 1.12547 0.90591 0.91955 1.25785 0.95453 0.95832 1.02148 1.70037 1.38198 1.24381 1.24007 0.85446 0.78896 0.78089 0.78504 1.19868 1.21352 1.19236 1.60727 1.57764 1.09141 1.02566 1.21653 0.97671 0.94979 0.90226 1.20725 0.98500 0.87838 0.82599 1.22234 0.97915 0.96388 1.04639 1.22039 0.92953 1.01120 1.03450 1.49118 1.55460 1.04109 1.06382 1.23100 1.00442 1.02225 0.83438 1.21843 1.17119 0.90616 1.01792 1.24400 0.99542 1.01830 0.89995 1.77402 1.25784 0.89925 1.24079 0.91948 0.96542 0.94165 0.93054 0.84426 0.93658 0.97371 0.89028 0.88524 0.92720 0.94443 0.90068 0.89276 0.77832 0.81044 0.78359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.94 71.98 0.64 -7.02 16 2 C 0.22 11.26 2.57 44.17 0.11 11.38 16 3 H -0.01 -0.49 7.80 -2.39 -0.02 -0.50 16 4 C -0.51 -28.39 8.84 25.60 0.23 -28.16 16 5 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 6 C 0.01 0.32 5.30 84.65 0.45 0.77 16 7 N -0.93 -54.44 11.32 21.45 0.24 -54.20 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.67 -27.87 5.44 -495.41 -2.70 -30.57 16 13 C 0.09 3.30 4.06 86.30 0.35 3.65 16 14 C 0.19 5.38 1.06 3.60 0.00 5.38 16 15 C -0.15 -3.37 7.96 71.98 0.57 -2.80 16 16 C -0.14 -3.69 8.57 71.98 0.62 -3.07 16 17 N -0.37 -10.64 3.43 -307.83 -1.06 -11.70 16 18 C 0.05 1.16 10.60 83.54 0.89 2.05 16 19 C -0.28 -5.96 10.80 21.99 0.24 -5.72 16 20 C 0.03 0.71 12.03 85.24 1.03 1.74 16 21 N -0.35 -11.86 11.66 -57.02 -0.66 -12.52 16 22 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 23 H 0.02 0.73 7.45 -2.39 -0.02 0.71 16 24 H 0.04 1.84 8.13 -2.38 -0.02 1.82 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.80 16 26 H 0.34 12.50 6.51 -89.69 -0.58 11.92 16 27 H 0.04 2.04 7.96 -2.39 -0.02 2.02 16 28 H 0.01 0.34 7.44 -2.38 -0.02 0.32 16 29 H 0.09 1.98 6.57 -2.39 -0.02 1.96 16 30 H 0.10 1.45 7.36 -2.39 -0.02 1.43 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 2.50 7.60 -2.39 -0.02 2.48 16 35 H 0.20 2.59 7.54 -2.91 -0.02 2.57 16 36 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.20 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -67.32 300.55 3.43 -63.88 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.46 Total: 20.89 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 5.12 Total: -21.81 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.18 Total: -108.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.32 3.43 -63.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697565065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.580 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds