Wall clock time and date at job start Mon Mar 30 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46905 * 109.47383 * 2 1 4 4 C 1.46900 * 111.00270 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46789 * 179.97438 * 4 3 2 6 6 C 1.39870 * 126.04298 * 269.99567 * 5 4 3 7 7 N 1.30838 * 108.20002 * 179.74791 * 6 5 4 8 8 N 1.40078 * 108.20780 * 0.40031 * 7 6 5 9 9 C 1.46501 * 126.03805 * 179.85243 * 8 7 6 10 10 H 1.08998 * 109.47029 * 24.69871 * 9 8 7 11 11 C 1.52999 * 109.47195 * 144.69546 * 9 8 7 12 12 C 1.53004 * 109.47288 * 264.69851 * 9 8 7 13 13 C 1.50699 * 109.46847 * 174.99945 * 12 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.34948 * 107.92340 * 359.59777 * 8 7 6 22 22 H 1.08995 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47192 * 300.00315 * 1 2 3 24 24 H 1.09006 * 109.47452 * 59.99926 * 1 2 3 25 25 H 1.08999 * 109.46946 * 239.99983 * 2 1 3 26 26 H 1.08998 * 109.47755 * 120.00089 * 2 1 3 27 27 H 1.00902 * 111.00135 * 56.04264 * 3 2 1 28 28 H 1.08999 * 109.47134 * 59.99829 * 4 3 2 29 29 H 1.08990 * 109.46978 * 299.99998 * 4 3 2 30 30 H 1.08001 * 125.89227 * 0.02562 * 6 5 4 31 31 H 1.08998 * 109.46866 * 60.00225 * 11 9 8 32 32 H 1.08998 * 109.47348 * 180.02562 * 11 9 8 33 33 H 1.09001 * 109.47203 * 300.00571 * 11 9 8 34 34 H 1.08992 * 109.47264 * 55.00119 * 12 9 8 35 35 H 1.09005 * 109.46510 * 294.99706 * 12 9 8 36 36 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 37 37 H 1.08006 * 126.12481 * 180.21944 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9523 2.8579 -0.0012 6 6 4.2054 3.6406 -1.1325 7 7 4.5839 4.8273 -0.7321 8 7 4.5925 4.8345 0.6686 9 6 4.9591 5.9671 1.5224 10 1 4.8040 6.8982 0.9773 11 6 4.0875 5.9611 2.7798 12 6 6.4314 5.8492 1.9219 13 6 6.8412 7.0748 2.6970 14 1 6.1234 7.8592 2.8863 15 6 8.1325 7.1943 3.1656 16 7 8.4886 8.2614 3.8468 17 14 9.3735 5.8366 2.8401 18 1 10.0772 6.1057 1.5604 19 1 10.3610 5.7926 3.9483 20 1 8.6690 4.5324 2.7529 21 6 4.1980 3.6156 1.0926 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6442 1.9014 0.7813 28 1 3.8647 0.9204 -0.8908 29 1 3.8654 0.9202 0.8891 30 1 4.1015 3.3217 -2.1592 31 1 4.2426 5.0300 3.3249 32 1 4.3599 6.8040 3.4149 33 1 3.0386 6.0450 2.4952 34 1 7.0454 5.7642 1.0254 35 1 6.5696 4.9637 2.5424 36 1 9.3960 8.3437 4.1798 37 1 4.0968 3.3011 2.1209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703512786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:56 Heat of formation + Delta-G solvation = 42.340008 kcal Electronic energy + Delta-G solvation = -16479.140919 eV Core-core repulsion = 13870.785802 eV Total energy + Delta-G solvation = -2608.355117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14239 -37.64880 -36.87289 -34.55114 -32.67100 -31.44153 -29.80428 -29.23914 -26.16409 -24.82106 -23.05037 -22.80081 -21.23122 -20.72551 -19.15742 -17.48804 -16.65872 -16.50629 -16.04736 -15.67783 -15.49505 -15.08340 -14.90964 -14.61088 -14.28924 -13.88390 -13.77045 -13.19612 -13.03125 -12.90535 -12.76872 -12.54323 -12.34206 -12.13626 -11.99593 -11.93872 -11.80637 -11.48336 -11.37532 -10.83623 -10.29505 -9.41235 -9.12349 -8.34992 -6.39454 1.08426 1.30210 1.32215 1.42092 1.68039 1.91410 2.29301 2.99799 3.51114 3.71111 3.98485 4.09523 4.17953 4.21685 4.33365 4.36666 4.46220 4.55800 4.70770 4.77862 4.83485 4.93473 4.96038 5.04811 5.09223 5.18001 5.19364 5.23776 5.34798 5.39744 5.48228 5.84976 6.13699 6.20142 6.28380 6.54591 6.66552 6.91196 7.24933 8.80387 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038675 B = 0.004794 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.801477 B = 5839.499566 C = 5964.526342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.697 5.697 4 C 0.150 3.850 5 C -0.247 4.247 6 C 0.053 3.947 7 N -0.346 5.346 8 N -0.365 5.365 9 C 0.170 3.830 10 H 0.078 0.922 11 C -0.138 4.138 12 C -0.007 4.007 13 C -0.523 4.523 14 H 0.052 0.948 15 C 0.017 3.983 16 N -0.940 5.940 17 Si 0.939 3.061 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.254 1.254 21 C 0.059 3.941 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.340 0.660 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.200 0.800 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.003 0.997 35 H 0.027 0.973 36 H 0.268 0.732 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 -17.653 -5.350 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 N -0.329 5.329 4 C 0.020 3.980 5 C -0.259 4.259 6 C -0.132 4.132 7 N -0.167 5.167 8 N -0.146 5.146 9 C 0.069 3.931 10 H 0.096 0.904 11 C -0.197 4.197 12 C -0.046 4.046 13 C -0.561 4.561 14 H 0.070 0.930 15 C -0.181 4.181 16 N -0.580 5.580 17 Si 0.764 3.236 18 H -0.201 1.201 19 H -0.203 1.203 20 H -0.177 1.177 21 C -0.089 4.089 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.158 0.842 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.216 0.784 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.490 -16.213 -6.220 21.390 hybrid contribution 0.928 -0.850 1.119 1.685 sum -11.562 -17.063 -5.101 21.233 Atomic orbital electron populations 1.21741 0.94463 1.02252 1.02019 1.21963 0.96116 0.88887 1.00691 1.60565 1.07770 1.14050 1.50515 1.20012 0.87144 0.89644 1.01179 1.20094 1.15496 0.99148 0.91196 1.24134 0.97843 0.90283 1.00976 1.77326 1.25729 1.23373 0.90288 1.49084 1.50354 1.10995 1.04191 1.21222 0.95903 0.85820 0.90170 0.90409 1.21967 0.98263 1.04142 0.95281 1.19803 0.92248 0.96962 0.95572 1.21152 0.96955 1.03949 1.34043 0.92988 1.25773 1.00298 0.97699 0.94351 1.70014 1.19948 1.29887 1.38199 0.85828 0.79102 0.80667 0.78033 1.20120 1.20313 1.17749 1.22742 0.99254 0.85745 1.01191 0.91035 0.92877 0.92662 0.90894 0.94986 0.84187 0.89869 0.94197 0.78351 0.90847 0.90526 0.91209 0.97821 0.95483 0.92258 0.79511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.17 71.98 0.73 -1.16 16 2 C 0.05 0.77 6.40 86.30 0.55 1.32 16 3 N -0.70 -13.05 6.49 -517.95 -3.36 -16.41 16 4 C 0.15 2.99 6.17 85.56 0.53 3.52 16 5 C -0.25 -6.59 5.61 -20.14 -0.11 -6.70 16 6 C 0.05 1.60 11.96 85.24 1.02 2.61 16 7 N -0.35 -13.04 12.58 -57.02 -0.72 -13.75 16 8 N -0.37 -13.28 3.53 -327.48 -1.15 -14.44 16 9 C 0.17 6.72 3.35 44.99 0.15 6.87 16 10 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 11 C -0.14 -4.52 8.64 71.98 0.62 -3.90 16 12 C -0.01 -0.35 3.84 29.85 0.11 -0.23 16 13 C -0.52 -28.80 8.96 25.60 0.23 -28.57 16 14 H 0.05 3.07 7.30 -2.91 -0.02 3.05 16 15 C 0.02 0.98 5.47 84.66 0.46 1.44 16 16 N -0.94 -57.24 13.96 21.45 0.30 -56.95 16 17 Si 0.94 44.21 27.47 68.60 1.88 46.09 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 21 C 0.06 1.73 10.50 83.54 0.88 2.60 16 22 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.34 6.30 8.72 -89.69 -0.78 5.52 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.20 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.07 2.12 7.16 -2.39 -0.02 2.10 16 32 H 0.08 2.79 6.95 -2.39 -0.02 2.77 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.00 0.17 7.57 -2.39 -0.02 0.15 16 35 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.19 4.39 7.26 -2.91 -0.02 4.37 16 Total: -1.00 -65.36 307.66 2.33 -63.03 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.20 Total: 14.64 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 5.18 Total: -22.21 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.93 Total: -101.55 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -65.36 2.33 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703512786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.372 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds