Wall clock time and date at job start Mon Mar 30 2020 04:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46897 * 109.46968 * 2 1 4 4 C 1.46897 * 110.99772 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46900 * 179.97438 * 4 3 2 6 6 C 1.39862 * 126.04094 * 269.69207 * 5 4 3 7 7 N 1.30842 * 108.19992 * 179.81747 * 6 5 4 8 8 N 1.40084 * 108.20663 * 0.44091 * 7 6 5 9 9 C 1.46495 * 126.04013 * 179.73793 * 8 7 6 10 10 H 1.09005 * 109.47059 * 334.97752 * 9 8 7 11 11 C 1.52995 * 109.47449 * 214.98079 * 9 8 7 12 12 C 1.53000 * 109.47282 * 94.97167 * 9 8 7 13 13 C 1.50699 * 109.47030 * 184.99954 * 12 9 8 14 14 H 1.07998 * 119.99948 * 0.02562 * 13 12 9 15 15 C 1.37877 * 119.99517 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00507 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47109 * 90.00105 * 17 15 13 19 19 H 1.48507 * 109.46853 * 209.99914 * 17 15 13 20 20 H 1.48497 * 109.46942 * 329.99765 * 17 15 13 21 21 C 1.34950 * 107.92381 * 359.71898 * 8 7 6 22 22 H 1.08997 * 109.47050 * 299.99352 * 1 2 3 23 23 H 1.08992 * 109.47229 * 60.00118 * 1 2 3 24 24 H 1.09005 * 109.46561 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46954 * 239.99910 * 2 1 3 26 26 H 1.09004 * 109.46833 * 120.00071 * 2 1 3 27 27 H 1.00899 * 110.99868 * 56.04737 * 3 2 1 28 28 H 1.09000 * 109.46743 * 60.00757 * 4 3 2 29 29 H 1.09000 * 109.47313 * 299.99940 * 4 3 2 30 30 H 1.07995 * 125.90192 * 0.02562 * 6 5 4 31 31 H 1.08995 * 109.47468 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.46724 * 299.99879 * 11 9 8 33 33 H 1.08995 * 109.47358 * 59.99342 * 11 9 8 34 34 H 1.09001 * 109.47213 * 305.00647 * 12 9 8 35 35 H 1.09002 * 109.46521 * 65.00123 * 12 9 8 36 36 H 0.97000 * 120.00369 * 180.02562 * 16 15 13 37 37 H 1.07995 * 126.12648 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2121 3.6383 -1.1313 7 7 4.5898 4.8253 -0.7310 8 7 4.5920 4.8347 0.6698 9 6 4.9579 5.9675 1.5236 10 1 5.6296 6.6310 0.9788 11 6 5.6596 5.4523 2.7817 12 6 3.6954 6.7348 1.9216 13 6 4.0808 7.9683 2.6968 14 1 5.1220 8.1837 2.8862 15 6 3.1040 8.8218 3.1642 16 7 1.8361 8.5593 2.9340 17 14 3.5817 10.3513 4.1245 18 1 3.7741 11.4855 3.1854 19 1 2.5045 10.6857 5.0906 20 1 4.8461 10.0985 4.8610 21 6 4.1972 3.6159 1.0939 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6442 1.9012 0.7814 28 1 3.8654 0.9202 -0.8892 29 1 3.8647 0.9203 0.8908 30 1 4.1143 3.3176 -2.1579 31 1 5.9314 6.2951 3.4171 32 1 4.9879 4.7888 3.3264 33 1 6.5590 4.9057 2.4981 34 1 3.1488 7.0253 1.0245 35 1 3.0640 6.0984 2.5417 36 1 1.1490 9.1600 3.2625 37 1 4.0953 3.3017 2.1221 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703512791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:00 Heat of formation + Delta-G solvation = 39.140577 kcal Electronic energy + Delta-G solvation = -16477.009535 eV Core-core repulsion = 13868.515680 eV Total energy + Delta-G solvation = -2608.493855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11467 -37.61970 -36.83762 -34.53112 -32.65094 -31.21846 -29.74460 -28.88334 -26.23451 -25.05403 -23.18750 -22.80893 -21.19618 -20.75150 -18.69733 -17.48582 -16.70463 -16.50244 -16.07521 -15.67221 -15.40290 -15.10193 -14.81485 -14.30275 -14.25609 -13.79118 -13.66613 -13.14023 -12.97279 -12.85338 -12.74202 -12.57528 -12.37076 -12.32437 -11.98786 -11.95829 -11.68719 -11.42694 -11.33969 -10.62735 -10.25902 -9.39484 -9.11268 -8.24604 -6.37509 1.09813 1.41025 1.42527 1.53248 1.73404 1.92269 2.39925 3.09980 3.52600 3.73628 3.99985 4.15775 4.20173 4.22823 4.36441 4.38931 4.46130 4.56994 4.69938 4.84043 4.87175 4.96116 5.00873 5.02922 5.17848 5.21244 5.24438 5.35019 5.38302 5.46942 5.68881 5.86490 6.03979 6.22828 6.31870 6.49395 6.77171 6.92874 7.32610 8.87782 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028959 B = 0.004996 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.653899 B = 5602.847987 C = 6143.589683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.704 5.704 4 C 0.151 3.849 5 C -0.249 4.249 6 C 0.051 3.949 7 N -0.348 5.348 8 N -0.363 5.363 9 C 0.162 3.838 10 H 0.080 0.920 11 C -0.136 4.136 12 C 0.033 3.967 13 C -0.535 4.535 14 H 0.075 0.925 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.254 1.254 21 C 0.058 3.942 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.337 0.663 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.200 0.800 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.070 0.930 34 H -0.024 1.024 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -16.228 -2.057 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.336 5.336 4 C 0.022 3.978 5 C -0.261 4.261 6 C -0.134 4.134 7 N -0.169 5.169 8 N -0.144 5.144 9 C 0.061 3.939 10 H 0.098 0.902 11 C -0.194 4.194 12 C -0.005 4.005 13 C -0.573 4.573 14 H 0.093 0.907 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.178 1.178 21 C -0.091 4.091 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.154 0.846 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.217 0.783 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.089 0.911 34 H -0.006 1.006 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.687 -14.821 -2.992 15.563 hybrid contribution -0.455 0.139 1.412 1.490 sum 3.232 -14.682 -1.580 15.116 Atomic orbital electron populations 1.21761 0.94825 1.02293 1.01796 1.21962 0.95883 0.88717 1.00886 1.60582 1.08244 1.14189 1.50549 1.20032 0.86795 0.89569 1.01407 1.20114 1.15414 0.99457 0.91125 1.24125 0.98224 0.90135 1.00966 1.77290 1.26353 1.22852 0.90454 1.49124 1.50424 1.10657 1.04156 1.21482 0.97817 0.84447 0.90179 0.90198 1.21963 0.99774 1.02509 0.95176 1.19247 0.91983 0.94772 0.94485 1.21466 0.93879 1.07391 1.34588 0.90675 1.25991 0.94693 1.01638 0.97238 1.70123 1.00907 1.39106 1.47198 0.85388 0.78491 0.78603 0.78230 1.20251 1.20947 1.17781 1.22700 0.99470 0.85830 1.01064 0.93341 0.92866 0.90674 0.90470 0.94755 0.84582 0.89431 0.93844 0.78304 0.89609 0.91645 0.91081 1.00560 0.98194 0.92717 0.79888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.17 71.98 0.73 -1.78 16 2 C 0.05 0.96 6.40 86.31 0.55 1.52 16 3 N -0.70 -16.32 6.49 -517.92 -3.36 -19.68 16 4 C 0.15 3.37 6.17 85.56 0.53 3.90 16 5 C -0.25 -7.39 5.61 -20.14 -0.11 -7.50 16 6 C 0.05 1.68 11.96 85.23 1.02 2.70 16 7 N -0.35 -14.25 12.58 -57.03 -0.72 -14.97 16 8 N -0.36 -14.44 3.53 -327.50 -1.15 -15.60 16 9 C 0.16 6.77 3.35 44.99 0.15 6.92 16 10 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 11 C -0.14 -4.51 8.65 71.98 0.62 -3.89 16 12 C 0.03 1.75 4.77 29.85 0.14 1.89 16 13 C -0.54 -29.12 8.41 25.60 0.22 -28.90 16 14 H 0.08 3.78 7.06 -2.91 -0.02 3.76 16 15 C 0.00 0.15 5.46 84.66 0.46 0.62 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 21 C 0.06 1.90 10.50 83.54 0.88 2.78 16 22 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.34 8.40 8.72 -89.69 -0.78 7.62 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.20 5.19 8.06 -2.91 -0.02 5.16 16 31 H 0.09 2.91 6.95 -2.39 -0.02 2.89 16 32 H 0.06 2.03 7.16 -2.38 -0.02 2.02 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 34 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.18 5.03 7.26 -2.91 -0.02 5.01 16 Total: -1.00 -66.96 311.26 2.52 -64.44 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.26 Total: 18.85 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 5.19 Total: -21.75 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -4.95 Total: -106.57 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -66.96 2.52 -64.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703512791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.580 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds