Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34130 * 125.99040 * 2 1 4 4 C 1.30502 * 109.25602 * 180.18356 * 3 2 1 5 5 C 1.50706 * 125.65014 * 179.88943 * 4 3 2 6 6 C 1.52999 * 109.46953 * 269.69523 * 5 4 3 7 7 N 1.46906 * 109.46897 * 180.02562 * 6 5 4 8 8 N 1.35040 * 108.69781 * 359.62964 * 4 3 2 9 9 C 1.46506 * 126.39364 * 180.21029 * 8 4 3 10 10 C 1.52991 * 109.47426 * 89.99659 * 9 8 4 11 11 C 1.50703 * 109.47190 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00196 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99988 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00002 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99866 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47276 * 60.00026 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47005 * 299.99325 * 15 13 11 19 19 C 1.34674 * 125.99191 * 179.77700 * 2 1 3 20 20 C 1.50696 * 126.58692 * 0.02562 * 19 2 1 21 21 H 1.08994 * 109.47548 * 270.22208 * 1 2 3 22 22 H 1.09007 * 109.47314 * 30.21919 * 1 2 3 23 23 H 1.09000 * 109.47384 * 150.21945 * 1 2 3 24 24 H 1.09000 * 109.46974 * 149.69271 * 5 4 3 25 25 H 1.09001 * 109.46547 * 29.69362 * 5 4 3 26 26 H 1.09000 * 109.47486 * 60.00062 * 6 5 4 27 27 H 1.09001 * 109.47362 * 299.99339 * 6 5 4 28 28 H 1.00896 * 111.00309 * 179.97438 * 7 6 5 29 29 H 1.00902 * 110.99923 * 303.95801 * 7 6 5 30 30 H 1.09008 * 109.46500 * 209.99875 * 9 8 4 31 31 H 1.08998 * 109.47052 * 329.99178 * 9 8 4 32 32 H 1.09001 * 109.47533 * 300.00035 * 10 9 8 33 33 H 1.09007 * 109.47183 * 59.99857 * 10 9 8 34 34 H 0.96994 * 119.99847 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.47391 * 269.95420 * 20 19 2 36 36 H 1.09004 * 109.47333 * 29.95682 * 20 19 2 37 37 H 1.08999 * 109.47153 * 149.95482 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 -0.0039 5 6 4.7387 1.6294 -0.0077 6 6 5.1427 1.9346 -1.4514 7 7 6.3068 2.8308 -1.4550 8 7 3.5912 -0.6401 0.0017 9 6 4.7996 -1.4684 0.0042 10 6 5.2215 -1.7507 1.4474 11 6 6.4642 -2.6032 1.4499 12 1 6.9083 -2.9131 0.5156 13 6 7.0334 -2.9885 2.6452 14 7 6.4923 -2.6116 3.7831 15 14 8.5734 -4.0459 2.6483 16 1 9.6672 -3.3295 1.9444 17 1 8.9829 -4.3198 4.0492 18 1 8.2944 -5.3286 1.9539 19 6 2.2984 -1.0896 0.0042 20 6 1.8472 -2.5275 0.0093 21 1 -0.3634 0.0040 1.0276 22 1 -0.3634 0.8881 -0.5173 23 1 -0.3634 -0.8919 -0.5104 24 1 5.5696 1.1483 0.5083 25 1 4.4831 2.5582 0.5023 26 1 4.3118 2.4156 -1.9674 27 1 5.3983 1.0057 -1.9613 28 1 6.5936 3.0472 -2.3978 29 1 6.1167 3.6726 -0.9323 30 1 4.5956 -2.4101 -0.5056 31 1 5.6020 -0.9420 -0.5126 32 1 5.4254 -0.8090 1.9572 33 1 4.4190 -2.2772 1.9642 34 1 6.8930 -2.8823 4.6239 35 1 1.7388 -2.8707 1.0381 36 1 0.8890 -2.6095 -0.5039 37 1 2.5874 -3.1423 -0.5027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708978977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 28.568374 kcal Electronic energy + Delta-G solvation = -16988.706449 eV Core-core repulsion = 14379.754149 eV Total energy + Delta-G solvation = -2608.952300 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70863 -35.54847 -34.77790 -32.77656 -32.40426 -29.92723 -29.24950 -28.01400 -25.10568 -24.09223 -22.21789 -21.26958 -19.60124 -18.89240 -16.70646 -15.91207 -15.54757 -15.20270 -14.75930 -14.45936 -13.98254 -13.66892 -13.25765 -12.79808 -12.57598 -12.54942 -12.34707 -12.06068 -11.97822 -11.78631 -11.70561 -11.21691 -11.06452 -11.01850 -10.77743 -10.23291 -10.03483 -9.48057 -9.33669 -8.70392 -8.68660 -8.50161 -7.54388 -6.14351 -4.20338 2.54733 3.25932 3.30605 3.31870 3.43427 3.49234 4.35003 4.48440 4.94172 5.21503 5.23308 5.28234 5.34355 5.43853 5.49993 5.59838 5.75768 5.78095 5.81897 5.99348 6.01989 6.10027 6.18370 6.21321 6.26978 6.46055 6.52366 6.98743 7.09813 7.28749 7.40518 7.43957 7.51966 7.72330 7.87550 8.16770 8.62249 8.84871 9.45170 10.96613 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.007314 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.767866 B = 3827.138933 C = 4881.670895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.019 4.019 3 N -0.497 5.497 4 C 0.204 3.796 5 C -0.032 4.032 6 C 0.071 3.929 7 N -0.849 5.849 8 N -0.433 5.433 9 C 0.100 3.900 10 C 0.018 3.982 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.021 4.021 20 C -0.073 4.073 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.341 0.659 29 H 0.341 0.659 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 5.087 -9.324 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.149 4.149 3 N -0.216 5.216 4 C -0.058 4.058 5 C -0.071 4.071 6 C -0.061 4.061 7 N -0.378 5.378 8 N -0.113 5.113 9 C -0.020 4.020 10 C -0.020 4.020 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.724 3.276 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.138 4.138 20 C -0.131 4.131 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.129 5.182 -8.750 11.874 hybrid contribution 0.580 -0.799 -0.275 1.024 sum -5.549 4.383 -9.025 11.466 Atomic orbital electron populations 1.19909 0.88395 1.01688 1.01552 1.20320 0.95885 0.88274 1.10452 1.69997 0.99811 1.30441 1.21398 1.22733 0.94447 0.81921 1.06742 1.19889 0.92423 0.97521 0.97313 1.21685 0.91045 0.97129 0.96200 1.58642 1.38044 1.21170 1.19987 1.45591 1.07043 1.07037 1.51628 1.22384 0.82833 0.93536 1.03286 1.19379 0.96883 0.97739 0.88010 1.20949 1.10438 1.32704 0.92708 0.92339 1.24994 0.97495 0.96055 0.95457 1.69962 1.40198 1.45082 0.97439 0.86574 0.83105 0.80721 0.77151 1.19991 1.21141 1.20120 1.20939 0.83921 0.97114 1.11842 1.20166 1.00923 0.89295 1.02736 0.92024 0.91922 0.91923 0.88759 0.89535 0.95098 0.91211 0.84679 0.84715 0.90338 0.89955 0.95845 0.95939 0.92630 0.90939 0.90817 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.22 36.00 0.37 -0.43 16 2 C -0.02 -0.35 7.09 -82.85 -0.59 -0.94 16 3 N -0.50 -9.80 11.25 -7.07 -0.08 -9.88 16 4 C 0.20 3.91 7.16 -155.41 -1.11 2.80 16 5 C -0.03 -0.52 5.57 -27.88 -0.16 -0.68 16 6 C 0.07 0.98 6.77 -3.82 -0.03 0.96 16 7 N -0.85 -10.06 9.62 -10.37 -0.10 -10.16 16 8 N -0.43 -8.46 2.75 -109.35 -0.30 -8.76 16 9 C 0.10 2.03 5.52 -4.04 -0.02 2.00 16 10 C 0.02 0.44 5.30 -27.89 -0.15 0.29 16 11 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 15 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.02 -0.39 6.95 -81.61 -0.57 -0.96 16 20 C -0.07 -1.09 9.96 36.00 0.36 -0.74 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.72 7.17 -51.93 -0.37 0.35 16 24 H 0.09 1.70 7.71 -51.93 -0.40 1.30 16 25 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.34 3.29 9.08 -39.29 -0.36 2.93 16 29 H 0.34 3.52 8.99 -39.29 -0.35 3.16 16 30 H 0.08 1.49 7.20 -51.92 -0.37 1.12 16 31 H 0.08 1.58 7.66 -51.93 -0.40 1.19 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.88 7.17 -51.93 -0.37 0.51 16 37 H 0.06 0.94 7.22 -51.93 -0.38 0.57 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -31.39 310.26 -8.32 -39.71 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.92 Total: 4.50 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.30 Total: -10.64 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.26 Total: -54.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.39 -8.32 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708978977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.274 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds