Wall clock time and date at job start Mon Mar 30 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34130 * 125.99040 * 2 1 4 4 C 1.30502 * 109.25602 * 180.18356 * 3 2 1 5 5 C 1.50706 * 125.65014 * 179.88943 * 4 3 2 6 6 C 1.52999 * 109.46953 * 269.69523 * 5 4 3 7 7 N 1.46906 * 109.46897 * 180.02562 * 6 5 4 8 8 N 1.35040 * 108.69781 * 359.62964 * 4 3 2 9 9 C 1.46506 * 126.39364 * 180.21029 * 8 4 3 10 10 C 1.52991 * 109.47426 * 89.99659 * 9 8 4 11 11 C 1.50703 * 109.47190 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00196 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99988 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00002 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99866 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47276 * 60.00026 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47005 * 299.99325 * 15 13 11 19 19 C 1.34674 * 125.99191 * 179.77700 * 2 1 3 20 20 C 1.50696 * 126.58692 * 0.02562 * 19 2 1 21 21 H 1.08994 * 109.47548 * 270.22208 * 1 2 3 22 22 H 1.09007 * 109.47314 * 30.21919 * 1 2 3 23 23 H 1.09000 * 109.47384 * 150.21945 * 1 2 3 24 24 H 1.09000 * 109.46974 * 149.69271 * 5 4 3 25 25 H 1.09001 * 109.46547 * 29.69362 * 5 4 3 26 26 H 1.09000 * 109.47486 * 60.00062 * 6 5 4 27 27 H 1.09001 * 109.47362 * 299.99339 * 6 5 4 28 28 H 1.00896 * 111.00309 * 179.97438 * 7 6 5 29 29 H 1.00902 * 110.99923 * 303.95801 * 7 6 5 30 30 H 1.09008 * 109.46500 * 209.99875 * 9 8 4 31 31 H 1.08998 * 109.47052 * 329.99178 * 9 8 4 32 32 H 1.09001 * 109.47533 * 300.00035 * 10 9 8 33 33 H 1.09007 * 109.47183 * 59.99857 * 10 9 8 34 34 H 0.96994 * 119.99847 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.47391 * 269.95420 * 20 19 2 36 36 H 1.09004 * 109.47333 * 29.95682 * 20 19 2 37 37 H 1.08999 * 109.47153 * 149.95482 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 -0.0039 5 6 4.7387 1.6294 -0.0077 6 6 5.1427 1.9346 -1.4514 7 7 6.3068 2.8308 -1.4550 8 7 3.5912 -0.6401 0.0017 9 6 4.7996 -1.4684 0.0042 10 6 5.2215 -1.7507 1.4474 11 6 6.4642 -2.6032 1.4499 12 1 6.9083 -2.9131 0.5156 13 6 7.0334 -2.9885 2.6452 14 7 6.4923 -2.6116 3.7831 15 14 8.5734 -4.0459 2.6483 16 1 9.6672 -3.3295 1.9444 17 1 8.9829 -4.3198 4.0492 18 1 8.2944 -5.3286 1.9539 19 6 2.2984 -1.0896 0.0042 20 6 1.8472 -2.5275 0.0093 21 1 -0.3634 0.0040 1.0276 22 1 -0.3634 0.8881 -0.5173 23 1 -0.3634 -0.8919 -0.5104 24 1 5.5696 1.1483 0.5083 25 1 4.4831 2.5582 0.5023 26 1 4.3118 2.4156 -1.9674 27 1 5.3983 1.0057 -1.9613 28 1 6.5936 3.0472 -2.3978 29 1 6.1167 3.6726 -0.9323 30 1 4.5956 -2.4101 -0.5056 31 1 5.6020 -0.9420 -0.5126 32 1 5.4254 -0.8090 1.9572 33 1 4.4190 -2.2772 1.9642 34 1 6.8930 -2.8823 4.6239 35 1 1.7388 -2.8707 1.0381 36 1 0.8890 -2.6095 -0.5039 37 1 2.5874 -3.1423 -0.5027 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708978977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:38 Heat of formation + Delta-G solvation = 8.098914 kcal Electronic energy + Delta-G solvation = -16989.594071 eV Core-core repulsion = 14379.754149 eV Total energy + Delta-G solvation = -2609.839922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.14513 -36.77833 -36.43456 -34.67418 -33.67273 -31.65975 -30.44550 -29.38589 -26.92684 -25.40640 -23.79911 -22.81132 -21.01821 -20.37341 -18.68383 -17.24380 -16.88859 -16.74465 -16.37009 -15.97536 -15.26715 -15.07119 -14.55929 -14.38096 -14.04921 -13.91207 -13.76814 -13.53423 -13.30464 -13.09920 -12.90035 -12.84476 -12.72757 -12.56293 -12.27812 -12.07699 -11.88718 -11.47200 -10.87880 -10.62823 -10.28640 -9.66856 -8.93199 -8.26604 -6.40589 1.10199 1.41011 1.43871 1.51715 1.95389 2.08053 2.39524 3.08064 3.29229 3.71810 3.88513 3.98750 4.08103 4.16698 4.24422 4.33097 4.39274 4.56201 4.58073 4.62163 4.71570 4.80256 4.93364 4.99705 5.03364 5.11290 5.22969 5.30209 5.34226 5.67264 5.68217 5.97336 6.02270 6.15342 6.35056 6.60549 6.74630 7.17778 7.30462 8.85306 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.007314 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.767866 B = 3827.138933 C = 4881.670895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.032 4.032 3 N -0.517 5.517 4 C 0.190 3.810 5 C -0.028 4.028 6 C 0.085 3.915 7 N -0.853 5.853 8 N -0.445 5.445 9 C 0.119 3.881 10 C 0.031 3.969 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.040 4.040 20 C -0.070 4.070 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.356 0.644 29 H 0.350 0.650 30 H 0.094 0.906 31 H 0.091 0.909 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 4.520 -10.795 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.162 4.162 3 N -0.237 5.237 4 C -0.072 4.072 5 C -0.068 4.068 6 C -0.047 4.047 7 N -0.386 5.386 8 N -0.126 5.126 9 C -0.003 4.003 10 C -0.007 4.007 11 C -0.582 4.582 12 H 0.091 0.909 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.212 1.212 18 H -0.187 1.187 19 C -0.156 4.156 20 C -0.128 4.128 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.007 0.993 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.049 4.627 -10.249 12.769 hybrid contribution 0.491 -0.560 0.211 0.774 sum -5.558 4.067 -10.038 12.174 Atomic orbital electron populations 1.20034 0.85454 1.03350 1.02410 1.21073 0.97843 0.87740 1.09502 1.70023 1.00224 1.31355 1.22126 1.23246 0.95184 0.82217 1.06539 1.19907 0.90818 0.97042 0.98987 1.21461 0.91804 0.97332 0.94123 1.58584 1.37056 1.21586 1.21331 1.45618 1.07287 1.07214 1.52493 1.22023 0.83704 0.94619 0.99920 1.19130 0.95629 0.95339 0.90622 1.21406 1.10911 1.32523 0.93347 0.90945 1.25982 1.00973 0.97409 0.95008 1.70113 1.42098 1.46685 0.98193 0.85432 0.78863 0.79167 0.77210 1.18924 1.21157 1.18747 1.21604 0.83450 0.98869 1.11660 1.20265 1.02613 0.87170 1.02738 0.91444 0.91332 0.89229 0.90932 0.88852 0.94677 0.91916 0.83014 0.83650 0.88808 0.89026 0.99289 0.99050 0.92626 0.91691 0.87420 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.40 10.22 71.23 0.73 -0.67 16 2 C -0.03 -1.15 7.09 41.39 0.29 -0.85 16 3 N -0.52 -20.27 11.25 -176.28 -1.98 -22.26 16 4 C 0.19 7.35 7.16 138.13 0.99 8.33 16 5 C -0.03 -0.93 5.57 29.85 0.17 -0.76 16 6 C 0.08 2.28 6.77 86.30 0.58 2.87 16 7 N -0.85 -19.17 9.62 -186.71 -1.80 -20.97 16 8 N -0.44 -17.46 2.75 -499.87 -1.38 -18.84 16 9 C 0.12 4.80 5.52 86.38 0.48 5.28 16 10 C 0.03 1.58 5.30 29.85 0.16 1.74 16 11 C -0.54 -29.44 9.11 25.60 0.23 -29.20 16 12 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 13 C 0.01 0.28 5.46 84.65 0.46 0.74 16 14 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 15 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 19 C -0.04 -1.45 6.95 40.95 0.28 -1.17 16 20 C -0.07 -1.99 9.96 71.23 0.71 -1.28 16 21 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.09 1.77 7.17 -2.39 -0.02 1.75 16 24 H 0.07 2.70 7.71 -2.39 -0.02 2.68 16 25 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.36 6.25 9.08 -89.70 -0.81 5.43 16 29 H 0.35 6.79 8.99 -89.69 -0.81 5.98 16 30 H 0.09 3.48 7.20 -2.38 -0.02 3.47 16 31 H 0.09 3.51 7.66 -2.39 -0.02 3.49 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 2.26 7.17 -2.39 -0.02 2.24 16 37 H 0.06 1.82 7.22 -2.39 -0.02 1.81 16 Total: -1.00 -68.01 310.26 1.69 -66.32 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.55 Total: 21.68 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.08 Total: -14.98 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.87 Total: -117.78 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.01 1.69 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708978977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.418 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds