Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47408 * 305.01739 * 6 5 4 8 8 N 1.46893 * 109.47686 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00446 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46946 * 324.99941 * 9 8 7 11 11 C 1.53001 * 109.46795 * 84.99937 * 9 8 7 12 12 C 1.52999 * 109.47327 * 204.99885 * 9 8 7 13 13 C 1.50697 * 109.46845 * 65.00231 * 12 9 8 14 14 H 1.07999 * 120.00633 * 359.97438 * 13 12 9 15 15 C 1.37885 * 119.99736 * 180.02562 * 13 12 9 16 16 N 1.31509 * 119.99768 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99666 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47295 * 59.99934 * 17 15 13 19 19 H 1.48505 * 109.46776 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46951 * 299.99493 * 17 15 13 21 21 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 22 22 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 25 25 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 26 26 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 27 27 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 28 28 H 1.09007 * 109.47349 * 300.00735 * 7 6 5 29 29 H 1.09003 * 109.47247 * 59.99898 * 7 6 5 30 30 H 1.00900 * 110.99770 * 56.04721 * 8 7 6 31 31 H 1.09008 * 109.46756 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47375 * 299.99536 * 11 9 8 33 33 H 1.08995 * 109.47294 * 60.00460 * 11 9 8 34 34 H 1.09001 * 109.47114 * 184.99593 * 12 9 8 35 35 H 1.08993 * 109.47463 * 305.00174 * 12 9 8 36 36 H 0.97006 * 119.99461 * 180.02562 * 16 15 13 37 37 H 1.08003 * 126.13278 * 180.23755 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6727 -1.1495 -1.1791 8 7 6.8658 -2.0064 -1.1785 9 6 7.7532 -1.6742 -2.3012 10 1 7.1540 -1.3851 -3.1646 11 6 8.6670 -0.5136 -1.9027 12 6 8.6045 -2.8947 -2.6568 13 6 7.7129 -3.9978 -3.1662 14 1 6.6458 -3.8439 -3.2295 15 6 8.2595 -5.2039 -3.5504 16 7 9.5589 -5.3915 -3.4728 17 14 7.1543 -6.5715 -4.1812 18 1 6.4298 -6.1045 -5.3903 19 1 7.9806 -7.7561 -4.5265 20 1 6.1741 -6.9409 -3.1286 21 6 2.3032 -1.0942 0.0051 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8903 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9951 2.1578 -0.0008 26 1 5.3220 -1.3842 0.9333 27 1 4.4729 -2.5683 -0.0891 28 1 5.1253 -1.2900 -2.1113 29 1 5.9744 -0.1059 -1.0888 30 1 6.6101 -2.9822 -1.1967 31 1 9.3251 -0.2668 -2.7359 32 1 8.0605 0.3560 -1.6495 33 1 9.2661 -0.8027 -1.0394 34 1 9.3240 -2.6233 -3.4293 35 1 9.1362 -3.2379 -1.7694 36 1 9.9434 -6.2399 -3.7435 37 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709971707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = 58.729856 kcal Electronic energy + Delta-G solvation = -16338.570980 eV Core-core repulsion = 13730.926580 eV Total energy + Delta-G solvation = -2607.644400 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16277 -36.97477 -34.24054 -32.65116 -31.69800 -30.64593 -27.79306 -27.42814 -25.54975 -23.37017 -22.34509 -20.71845 -20.06303 -19.44517 -16.78334 -16.41195 -15.81477 -14.88851 -14.64319 -14.48586 -14.05492 -13.72928 -13.23752 -13.16581 -12.98451 -12.73281 -12.06841 -11.99614 -11.86096 -11.53952 -11.34306 -11.25344 -10.98585 -10.71307 -10.55769 -10.47987 -10.21627 -9.43946 -9.26702 -9.12853 -8.44659 -8.31060 -7.80139 -6.07595 -4.11457 1.92926 2.54430 2.78718 3.26176 3.32124 3.33157 4.38143 4.45270 4.79413 4.90660 5.06528 5.21378 5.23437 5.32732 5.40325 5.46853 5.60598 5.74329 5.85830 5.92972 6.02127 6.10422 6.14172 6.20577 6.27270 6.51907 6.67793 6.88733 6.90216 7.06037 7.41909 7.57368 7.73951 7.90578 7.95996 8.14611 8.31180 8.94414 9.52891 11.03203 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.004958 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.838351 B = 5646.452856 C = 6515.364684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.251 4.251 3 C 0.041 3.959 4 N -0.291 5.291 5 N -0.362 5.362 6 C 0.133 3.867 7 C 0.051 3.949 8 N -0.680 5.680 9 C 0.090 3.910 10 H 0.030 0.970 11 C -0.136 4.136 12 C 0.021 3.979 13 C -0.528 4.528 14 H 0.050 0.950 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.054 3.946 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.179 0.821 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.354 0.646 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 8.540 6.925 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.263 4.263 3 C -0.145 4.145 4 N -0.112 5.112 5 N -0.144 5.144 6 C 0.012 3.988 7 C -0.079 4.079 8 N -0.315 5.315 9 C -0.019 4.019 10 H 0.048 0.952 11 C -0.194 4.194 12 C -0.017 4.017 13 C -0.566 4.566 14 H 0.068 0.932 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.093 4.093 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.196 0.804 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.175 0.825 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.424 9.044 7.335 17.028 hybrid contribution -1.896 -1.519 -1.192 2.706 sum -14.320 7.525 6.143 17.304 Atomic orbital electron populations 1.20012 0.89562 1.01836 1.01330 1.20110 0.96971 0.91955 1.17266 1.23763 0.90109 0.99661 1.00978 1.77352 1.21094 0.89145 1.23603 1.48670 1.05549 1.04685 1.55522 1.21784 0.83334 0.92068 1.01599 1.22119 0.91333 0.99655 0.94820 1.60525 1.14784 1.09195 1.46973 1.21617 0.93687 0.97163 0.89451 0.95213 1.21799 0.99173 0.97404 1.01019 1.19282 0.94868 0.90390 0.97122 1.21122 0.93311 0.98329 1.43816 0.93169 1.24986 0.94916 0.98501 0.95600 1.69947 1.10382 1.24928 1.47573 0.86694 0.80570 0.81590 0.79349 1.20363 1.21182 1.20229 1.22380 0.84349 1.00067 1.02515 0.92349 0.92109 0.92365 0.80415 0.88853 0.88666 0.95460 0.90338 0.82530 0.93197 0.94385 0.92542 0.95902 0.95471 0.92807 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.37 36.01 0.37 -0.20 16 2 C -0.25 -2.87 6.10 -105.05 -0.64 -3.51 16 3 C 0.04 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.29 -4.39 12.42 30.62 0.38 -4.01 16 5 N -0.36 -5.07 3.68 -61.36 -0.23 -5.29 16 6 C 0.13 1.80 6.77 -4.04 -0.03 1.78 16 7 C 0.05 0.83 5.67 -3.83 -0.02 0.81 16 8 N -0.68 -12.71 6.31 -106.73 -0.67 -13.39 16 9 C 0.09 1.87 2.59 -67.71 -0.18 1.70 16 10 H 0.03 0.65 7.80 -51.93 -0.40 0.24 16 11 C -0.14 -2.50 9.41 37.16 0.35 -2.15 16 12 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 13 C -0.53 -14.25 8.12 -34.44 -0.28 -14.53 16 14 H 0.05 1.31 7.49 -52.49 -0.39 0.92 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 17 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.05 0.64 11.36 -17.23 -0.20 0.44 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16 28 H 0.03 0.48 8.05 -51.92 -0.42 0.06 16 29 H 0.08 1.35 7.44 -51.93 -0.39 0.96 16 30 H 0.35 6.96 7.21 -39.29 -0.28 6.68 16 31 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.04 0.64 7.46 -51.93 -0.39 0.25 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -30.41 312.00 -7.21 -37.62 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.05 Total: 3.08 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.05 Total: -13.32 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.22 Total: -48.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.41 -7.21 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.346 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds