Wall clock time and date at job start Mon Mar 30 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47408 * 305.01739 * 6 5 4 8 8 N 1.46893 * 109.47686 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00446 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46946 * 324.99941 * 9 8 7 11 11 C 1.53001 * 109.46795 * 84.99937 * 9 8 7 12 12 C 1.52999 * 109.47327 * 204.99885 * 9 8 7 13 13 C 1.50697 * 109.46845 * 65.00231 * 12 9 8 14 14 H 1.07999 * 120.00633 * 359.97438 * 13 12 9 15 15 C 1.37885 * 119.99736 * 180.02562 * 13 12 9 16 16 N 1.31509 * 119.99768 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99666 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47295 * 59.99934 * 17 15 13 19 19 H 1.48505 * 109.46776 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46951 * 299.99493 * 17 15 13 21 21 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 22 22 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 25 25 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 26 26 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 27 27 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 28 28 H 1.09007 * 109.47349 * 300.00735 * 7 6 5 29 29 H 1.09003 * 109.47247 * 59.99898 * 7 6 5 30 30 H 1.00900 * 110.99770 * 56.04721 * 8 7 6 31 31 H 1.09008 * 109.46756 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47375 * 299.99536 * 11 9 8 33 33 H 1.08995 * 109.47294 * 60.00460 * 11 9 8 34 34 H 1.09001 * 109.47114 * 184.99593 * 12 9 8 35 35 H 1.08993 * 109.47463 * 305.00174 * 12 9 8 36 36 H 0.97006 * 119.99461 * 180.02562 * 16 15 13 37 37 H 1.08003 * 126.13278 * 180.23755 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6727 -1.1495 -1.1791 8 7 6.8658 -2.0064 -1.1785 9 6 7.7532 -1.6742 -2.3012 10 1 7.1540 -1.3851 -3.1646 11 6 8.6670 -0.5136 -1.9027 12 6 8.6045 -2.8947 -2.6568 13 6 7.7129 -3.9978 -3.1662 14 1 6.6458 -3.8439 -3.2295 15 6 8.2595 -5.2039 -3.5504 16 7 9.5589 -5.3915 -3.4728 17 14 7.1543 -6.5715 -4.1812 18 1 6.4298 -6.1045 -5.3903 19 1 7.9806 -7.7561 -4.5265 20 1 6.1741 -6.9409 -3.1286 21 6 2.3032 -1.0942 0.0051 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8903 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9951 2.1578 -0.0008 26 1 5.3220 -1.3842 0.9333 27 1 4.4729 -2.5683 -0.0891 28 1 5.1253 -1.2900 -2.1113 29 1 5.9744 -0.1059 -1.0888 30 1 6.6101 -2.9822 -1.1967 31 1 9.3251 -0.2668 -2.7359 32 1 8.0605 0.3560 -1.6495 33 1 9.2661 -0.8027 -1.0394 34 1 9.3240 -2.6233 -3.4293 35 1 9.1362 -3.2379 -1.7694 36 1 9.9434 -6.2399 -3.7435 37 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709971707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:47 Heat of formation + Delta-G solvation = 39.342348 kcal Electronic energy + Delta-G solvation = -16339.411685 eV Core-core repulsion = 13730.926580 eV Total energy + Delta-G solvation = -2608.485105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.09414 -38.54864 -35.61109 -34.45747 -32.67374 -31.97879 -29.35211 -28.91922 -26.50967 -25.16965 -23.72989 -21.74558 -21.16384 -20.94840 -18.53176 -17.79771 -17.14821 -16.50704 -16.26076 -15.56629 -15.42161 -14.80384 -14.73104 -14.07220 -13.93793 -13.85251 -13.58881 -13.46438 -13.18338 -13.06674 -12.70924 -12.65101 -12.54640 -12.43054 -12.38899 -11.97959 -11.39561 -11.31532 -11.05688 -10.58352 -10.38824 -9.36194 -9.20816 -8.20364 -6.31846 0.99390 1.40104 1.41953 1.49863 1.57697 1.90687 2.39617 3.10380 3.30790 3.64716 3.99685 4.03413 4.12010 4.24825 4.31750 4.48794 4.52903 4.58944 4.65902 4.76525 4.79246 4.97067 4.99729 5.03401 5.15639 5.28429 5.29696 5.34134 5.44712 5.49199 5.80831 5.81364 6.14373 6.18302 6.24229 6.55052 6.79830 6.82863 7.37331 8.91092 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.004958 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.838351 B = 5646.452856 C = 6515.364684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.256 4.256 3 C 0.037 3.963 4 N -0.336 5.336 5 N -0.377 5.377 6 C 0.141 3.859 7 C 0.062 3.938 8 N -0.677 5.677 9 C 0.098 3.902 10 H 0.021 0.979 11 C -0.129 4.129 12 C 0.028 3.972 13 C -0.538 4.538 14 H 0.058 0.942 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.262 1.262 21 C 0.046 3.954 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.203 0.797 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.015 0.985 29 H 0.069 0.931 30 H 0.349 0.651 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H -0.005 1.005 35 H 0.002 0.998 36 H 0.264 0.736 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 8.342 7.269 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.148 4.148 4 N -0.158 5.158 5 N -0.159 5.159 6 C 0.020 3.980 7 C -0.068 4.068 8 N -0.311 5.311 9 C -0.012 4.012 10 H 0.039 0.961 11 C -0.186 4.186 12 C -0.009 4.009 13 C -0.576 4.576 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.786 3.214 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.100 4.100 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.220 0.780 26 H 0.112 0.888 27 H 0.134 0.866 28 H 0.034 0.966 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.889 8.868 7.691 18.960 hybrid contribution -1.164 -1.392 -1.293 2.229 sum -16.053 7.476 6.397 18.829 Atomic orbital electron populations 1.20072 0.87282 1.03073 1.02007 1.20554 0.98546 0.91368 1.16253 1.24319 0.89652 1.01270 0.99600 1.77297 1.22788 0.90060 1.25621 1.48678 1.06136 1.04453 1.56672 1.21652 0.83243 0.93090 1.00040 1.22006 0.90570 0.98519 0.95703 1.60512 1.15815 1.09186 1.45563 1.21420 0.93754 0.95963 0.90078 0.96097 1.21714 0.98928 0.96932 1.01072 1.19126 0.94660 0.92074 0.95035 1.21473 0.93856 0.98886 1.43410 0.92401 1.25893 0.96281 1.01248 0.95788 1.70087 1.12373 1.25700 1.48792 0.85566 0.78696 0.78117 0.79049 1.19794 1.21115 1.18633 1.22975 0.83600 1.01691 1.01738 0.91847 0.90913 0.91167 0.78007 0.88801 0.86637 0.96630 0.91287 0.83140 0.92733 0.92652 0.92754 0.98639 0.97971 0.92752 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.37 71.24 0.74 -0.16 16 2 C -0.26 -5.25 6.10 -20.14 -0.12 -5.37 16 3 C 0.04 0.86 11.96 85.24 1.02 1.88 16 4 N -0.34 -9.87 12.42 -57.03 -0.71 -10.57 16 5 N -0.38 -10.04 3.68 -348.06 -1.28 -11.32 16 6 C 0.14 3.64 6.77 86.38 0.58 4.23 16 7 C 0.06 1.99 5.67 86.30 0.49 2.48 16 8 N -0.68 -25.11 6.31 -491.57 -3.10 -28.21 16 9 C 0.10 4.09 2.59 44.92 0.12 4.20 16 10 H 0.02 0.91 7.80 -2.38 -0.02 0.90 16 11 C -0.13 -4.68 9.41 71.98 0.68 -4.00 16 12 C 0.03 1.47 4.57 29.85 0.14 1.61 16 13 C -0.54 -29.25 8.12 25.60 0.21 -29.04 16 14 H 0.06 2.99 7.49 -2.91 -0.02 2.97 16 15 C 0.01 0.36 5.46 84.66 0.46 0.82 16 16 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 17 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 C 0.05 0.99 11.36 83.54 0.95 1.94 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.20 3.33 8.06 -2.92 -0.02 3.30 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.12 2.47 8.07 -2.38 -0.02 2.45 16 28 H 0.02 0.53 8.05 -2.38 -0.02 0.51 16 29 H 0.07 2.34 7.44 -2.39 -0.02 2.32 16 30 H 0.35 13.58 7.21 -89.69 -0.65 12.93 16 31 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.81 7.46 -2.39 -0.02 1.80 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.26 14.86 8.31 -92.70 -0.77 14.08 16 37 H 0.20 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.47 312.00 2.87 -62.61 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.39 Total: 19.25 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 5.26 Total: -21.41 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.81 Total: -105.27 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.47 2.87 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709971707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.948 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds