Wall clock time and date at job start Mon Mar 30 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47423 * 2 1 4 4 C 1.34674 * 126.58958 * 275.04421 * 3 2 1 5 5 N 1.34128 * 108.01839 * 179.74112 * 4 3 2 6 6 C 1.30500 * 109.25706 * 0.36622 * 5 4 3 7 7 C 1.50698 * 125.64508 * 179.89347 * 6 5 4 8 8 N 1.46896 * 109.47416 * 274.69169 * 7 6 5 9 9 C 1.46896 * 111.00449 * 174.94937 * 8 7 6 10 10 H 1.09007 * 109.46748 * 33.74991 * 9 8 7 11 11 C 1.50702 * 109.47314 * 153.74936 * 9 8 7 12 12 H 1.07998 * 119.99894 * 0.02562 * 11 9 8 13 13 C 1.37874 * 119.99825 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00281 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46745 * 60.00152 * 15 13 11 17 17 H 1.48499 * 109.47043 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47167 * 300.00170 * 15 13 11 19 19 C 1.52997 * 109.47001 * 273.75312 * 9 8 7 20 20 C 1.52999 * 109.47048 * 297.96221 * 19 9 8 21 21 N 1.35044 * 108.69868 * 359.62978 * 6 5 4 22 22 H 0.97002 * 126.38992 * 180.24540 * 21 6 5 23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47347 * 300.00462 * 1 2 3 25 25 H 1.08997 * 109.47098 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99538 * 2 1 3 27 27 H 1.09006 * 109.46961 * 119.99966 * 2 1 3 28 28 H 1.08002 * 125.98736 * 359.92263 * 4 3 2 29 29 H 1.09006 * 109.46762 * 154.69689 * 7 6 5 30 30 H 1.08996 * 109.47764 * 34.69884 * 7 6 5 31 31 H 1.00906 * 111.00193 * 298.90756 * 8 7 6 32 32 H 0.97002 * 120.00382 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.46883 * 177.96794 * 19 9 8 34 34 H 1.08995 * 109.47324 * 57.96869 * 19 9 8 35 35 H 1.09002 * 109.46874 * 174.45039 * 20 19 9 36 36 H 1.08998 * 109.46758 * 54.45806 * 20 19 9 37 37 H 1.08997 * 109.47330 * 294.45199 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2104 2.2093 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7817 3.3725 0.6483 7 6 3.2633 4.5122 1.5086 8 7 4.7309 4.4933 1.5698 9 6 5.2424 5.6599 2.3015 10 1 4.5445 5.9252 3.0957 11 6 6.5841 5.3276 2.9020 12 1 7.0140 4.3480 2.7544 13 6 7.2627 6.2743 3.6397 14 7 6.7389 7.4671 3.8198 15 14 8.9261 5.8627 4.3834 16 1 9.8767 5.5023 3.3009 17 1 9.4431 7.0420 5.1231 18 1 8.7812 4.7168 5.3167 19 6 5.3924 6.8399 1.3392 20 6 6.4101 6.4859 0.2530 21 7 2.3946 2.1582 1.0948 22 1 2.3764 1.8637 2.0189 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0183 1.9342 -2.1037 29 1 2.8564 4.4054 2.5142 30 1 2.9296 5.4572 1.0801 31 1 5.0648 3.6341 1.9803 32 1 7.2161 8.1331 4.3391 33 1 5.7376 7.7155 1.8890 34 1 4.4291 7.0571 0.8777 35 1 6.4445 7.2855 -0.4870 36 1 6.1155 5.5550 -0.2314 37 1 7.3952 6.3652 0.7036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:47 Heat of formation + Delta-G solvation = 39.712632 kcal Electronic energy + Delta-G solvation = -16696.578841 eV Core-core repulsion = 14088.109793 eV Total energy + Delta-G solvation = -2608.469049 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83791 -36.35161 -34.17677 -32.76480 -32.02537 -30.76448 -28.61817 -26.46588 -24.51880 -23.22407 -22.95398 -20.76433 -20.16941 -19.00539 -17.23263 -16.30059 -15.15128 -14.96524 -14.52832 -14.32885 -14.04833 -13.55847 -13.41257 -13.22074 -12.53326 -12.43169 -12.18373 -11.78530 -11.72348 -11.39324 -11.28789 -10.91333 -10.79823 -10.36896 -10.09366 -9.76342 -9.72544 -9.60254 -9.31079 -8.80439 -8.48648 -8.00870 -7.29299 -6.03039 -4.08766 2.21726 3.26656 3.29697 3.34973 3.37469 3.42917 4.39331 4.68262 4.83172 4.88562 5.13314 5.27673 5.33355 5.45964 5.54481 5.60719 5.66942 5.71981 5.97446 6.03431 6.21728 6.45319 6.59256 6.79151 6.91915 6.98770 7.26830 7.33819 7.51408 7.59695 7.75586 7.79609 7.85313 8.23350 8.35026 8.43093 8.61014 8.98747 9.55855 11.02853 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.005003 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.106532 B = 5595.832455 C = 5929.550419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.038 4.038 4 C -0.025 4.025 5 N -0.475 5.475 6 C 0.233 3.767 7 C 0.142 3.858 8 N -0.674 5.674 9 C 0.218 3.782 10 H 0.002 0.998 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.279 1.279 19 C -0.102 4.102 20 C -0.119 4.119 21 N -0.566 5.566 22 H 0.414 0.586 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.163 0.837 29 H 0.033 0.967 30 H 0.096 0.904 31 H 0.329 0.671 32 H 0.262 0.738 33 H 0.085 0.915 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.049 0.951 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -11.794 -4.130 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.174 4.174 5 N -0.194 5.194 6 C -0.032 4.032 7 C 0.011 3.989 8 N -0.306 5.306 9 C 0.110 3.890 10 H 0.020 0.980 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.205 1.205 19 C -0.140 4.140 20 C -0.176 4.176 21 N -0.169 5.169 22 H 0.251 0.749 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.855 -10.606 -5.210 15.387 hybrid contribution 0.519 -1.260 2.259 2.638 sum -9.336 -11.866 -2.951 15.384 Atomic orbital electron populations 1.21774 0.94760 1.01556 1.02366 1.19921 0.95747 0.89518 1.03087 1.21135 1.10250 0.96346 0.87639 1.22074 1.06287 0.90737 0.98302 1.70284 1.18048 1.22656 1.08428 1.23471 1.01359 0.87049 0.91317 1.20267 0.91565 0.93294 0.93776 1.60616 1.03625 1.06999 1.59364 1.19163 0.94255 0.86078 0.89457 0.98042 1.21108 1.03584 0.99065 1.31550 0.92402 1.24863 0.97765 0.94940 0.96123 1.69875 1.38440 1.04241 1.40058 0.86632 0.84304 0.77636 0.79258 1.20172 1.21306 1.20459 1.21418 0.95485 1.00789 0.96313 1.21428 1.00297 0.98798 0.97110 1.43237 1.51366 1.12856 1.09456 0.74912 0.92322 0.92977 0.92127 0.89733 0.91538 0.81962 0.94931 0.88589 0.85411 0.92852 0.89662 0.96874 0.96808 0.93213 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.04 -0.39 6.49 -27.88 -0.18 -0.57 16 3 C -0.04 -0.49 6.49 -81.60 -0.53 -1.02 16 4 C -0.03 -0.38 11.79 -17.81 -0.21 -0.59 16 5 N -0.48 -8.82 11.25 -10.81 -0.12 -8.94 16 6 C 0.23 3.97 7.71 -155.42 -1.20 2.77 16 7 C 0.14 2.59 6.08 -4.98 -0.03 2.56 16 8 N -0.67 -14.21 5.50 -109.22 -0.60 -14.81 16 9 C 0.22 5.33 2.30 -68.87 -0.16 5.17 16 10 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 11 C -0.51 -13.62 7.33 -34.44 -0.25 -13.87 16 12 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 13 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -24.80 11.34 55.43 0.63 -24.18 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.10 -2.49 5.58 -26.73 -0.15 -2.64 16 20 C -0.12 -2.79 9.46 37.16 0.35 -2.44 16 21 N -0.57 -7.66 6.15 -6.54 -0.04 -7.70 16 22 H 0.41 4.44 8.96 -40.82 -0.37 4.08 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 1.84 7.40 -51.93 -0.38 1.46 16 31 H 0.33 6.77 8.24 -39.29 -0.32 6.45 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.09 2.30 6.13 -51.93 -0.32 1.98 16 34 H 0.01 0.30 7.43 -51.93 -0.39 -0.09 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 37 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -29.87 305.36 -8.51 -38.38 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.87 Total: 6.46 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.08 Total: -9.76 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.13 Total: -55.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.87 -8.51 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.094 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds