Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47423 * 2 1 4 4 C 1.34674 * 126.58958 * 275.04421 * 3 2 1 5 5 N 1.34128 * 108.01839 * 179.74112 * 4 3 2 6 6 C 1.30500 * 109.25706 * 0.36622 * 5 4 3 7 7 C 1.50698 * 125.64508 * 179.89347 * 6 5 4 8 8 N 1.46896 * 109.47416 * 274.69169 * 7 6 5 9 9 C 1.46896 * 111.00449 * 174.94937 * 8 7 6 10 10 H 1.09007 * 109.46748 * 33.74991 * 9 8 7 11 11 C 1.50702 * 109.47314 * 153.74936 * 9 8 7 12 12 H 1.07998 * 119.99894 * 0.02562 * 11 9 8 13 13 C 1.37874 * 119.99825 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00281 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 119.99818 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46745 * 60.00152 * 15 13 11 17 17 H 1.48499 * 109.47043 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47167 * 300.00170 * 15 13 11 19 19 C 1.52997 * 109.47001 * 273.75312 * 9 8 7 20 20 C 1.52999 * 109.47048 * 297.96221 * 19 9 8 21 21 N 1.35044 * 108.69868 * 359.62978 * 6 5 4 22 22 H 0.97002 * 126.38992 * 180.24540 * 21 6 5 23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47347 * 300.00462 * 1 2 3 25 25 H 1.08997 * 109.47098 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.47347 * 239.99538 * 2 1 3 27 27 H 1.09006 * 109.46961 * 119.99966 * 2 1 3 28 28 H 1.08002 * 125.98736 * 359.92263 * 4 3 2 29 29 H 1.09006 * 109.46762 * 154.69689 * 7 6 5 30 30 H 1.08996 * 109.47764 * 34.69884 * 7 6 5 31 31 H 1.00906 * 111.00193 * 298.90756 * 8 7 6 32 32 H 0.97002 * 120.00382 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.46883 * 177.96794 * 19 9 8 34 34 H 1.08995 * 109.47324 * 57.96869 * 19 9 8 35 35 H 1.09002 * 109.46874 * 174.45039 * 20 19 9 36 36 H 1.08998 * 109.46758 * 54.45806 * 20 19 9 37 37 H 1.08997 * 109.47330 * 294.45199 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2104 2.2093 -1.0771 5 7 2.6643 3.3974 -0.6511 6 6 2.7817 3.3725 0.6483 7 6 3.2633 4.5122 1.5086 8 7 4.7309 4.4933 1.5698 9 6 5.2424 5.6599 2.3015 10 1 4.5445 5.9252 3.0957 11 6 6.5841 5.3276 2.9020 12 1 7.0140 4.3480 2.7544 13 6 7.2627 6.2743 3.6397 14 7 6.7389 7.4671 3.8198 15 14 8.9261 5.8627 4.3834 16 1 9.8767 5.5023 3.3009 17 1 9.4431 7.0420 5.1231 18 1 8.7812 4.7168 5.3167 19 6 5.3924 6.8399 1.3392 20 6 6.4101 6.4859 0.2530 21 7 2.3946 2.1582 1.0948 22 1 2.3764 1.8637 2.0189 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0183 1.9342 -2.1037 29 1 2.8564 4.4054 2.5142 30 1 2.9296 5.4572 1.0801 31 1 5.0648 3.6341 1.9803 32 1 7.2161 8.1331 4.3391 33 1 5.7376 7.7155 1.8890 34 1 4.4291 7.0571 0.8777 35 1 6.4445 7.2855 -0.4870 36 1 6.1155 5.5550 -0.2314 37 1 7.3952 6.3652 0.7036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719163200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = 20.504699 kcal Electronic energy + Delta-G solvation = -16697.411760 eV Core-core repulsion = 14088.109793 eV Total energy + Delta-G solvation = -2609.301967 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.00249 -38.15817 -35.21625 -34.42118 -33.27426 -32.57777 -30.01179 -28.13595 -26.03053 -24.99521 -24.05137 -21.91846 -21.38748 -20.89172 -18.65010 -17.96135 -16.94620 -16.31380 -15.95999 -15.58019 -15.17207 -14.99291 -14.94894 -14.43212 -14.13251 -13.98759 -13.49321 -13.22564 -13.12881 -12.78552 -12.64164 -12.43106 -12.37223 -12.00723 -11.95702 -11.65634 -11.31175 -10.95057 -10.81518 -10.79898 -10.52810 -9.18473 -9.00367 -8.08471 -6.20614 1.08379 1.43448 1.45817 1.52377 2.14939 2.21832 2.44497 3.20640 3.50801 3.79010 3.97141 4.13171 4.27787 4.44657 4.48288 4.61350 4.66801 4.77987 4.81236 4.83745 4.95847 4.99942 5.08250 5.30877 5.37585 5.40577 5.45026 5.55722 5.72327 5.79431 5.87307 5.89009 6.27216 6.43434 6.52751 6.75242 6.99985 7.24383 7.47781 8.96542 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.038982 B = 0.005003 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.106532 B = 5595.832455 C = 5929.550419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.012 4.012 4 C -0.057 4.057 5 N -0.513 5.513 6 C 0.208 3.792 7 C 0.150 3.850 8 N -0.674 5.674 9 C 0.225 3.775 10 H -0.024 1.024 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.020 3.980 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.098 4.098 20 C -0.106 4.106 21 N -0.554 5.554 22 H 0.428 0.572 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.181 0.819 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.332 0.668 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.020 0.980 35 H 0.032 0.968 36 H 0.047 0.953 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.430 -13.948 -4.240 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.204 4.204 5 N -0.233 5.233 6 C -0.056 4.056 7 C 0.019 3.981 8 N -0.306 5.306 9 C 0.117 3.883 10 H -0.007 1.007 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.179 4.179 14 N -0.554 5.554 15 Si 0.780 3.220 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.137 4.137 20 C -0.163 4.163 21 N -0.158 5.158 22 H 0.267 0.733 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.198 0.802 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.139 -12.781 -5.309 17.156 hybrid contribution 0.512 -0.660 2.246 2.397 sum -9.626 -13.442 -3.062 16.815 Atomic orbital electron populations 1.21746 0.93734 1.02842 1.01798 1.20115 0.96436 0.86815 1.04714 1.21773 1.07177 0.97465 0.86486 1.22507 1.07596 0.90304 1.00014 1.70175 1.18958 1.24793 1.09394 1.22970 1.03613 0.88009 0.91022 1.20089 0.89666 0.93549 0.94815 1.60487 1.05757 1.05910 1.58462 1.18930 0.93196 0.87308 0.88913 1.00673 1.21361 1.04363 0.98983 1.31626 0.92559 1.25580 1.00930 0.94823 0.96591 1.70003 1.39700 1.05010 1.40668 0.85682 0.80315 0.77541 0.78502 1.20031 1.21159 1.19583 1.21319 0.96042 0.99918 0.96413 1.21277 0.98732 0.99373 0.96921 1.43174 1.50315 1.11843 1.10513 0.73278 0.90136 0.93653 0.92643 0.88070 0.89952 0.80151 0.93375 0.90138 0.85103 0.92948 0.92145 0.96147 0.94895 0.93374 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.90 71.98 0.71 -1.08 16 2 C -0.04 -0.60 6.49 29.85 0.19 -0.41 16 3 C -0.01 -0.29 6.49 40.95 0.27 -0.02 16 4 C -0.06 -1.64 11.79 83.52 0.98 -0.65 16 5 N -0.51 -18.88 11.25 -188.13 -2.12 -21.00 16 6 C 0.21 7.00 7.71 138.13 1.06 8.06 16 7 C 0.15 5.47 6.08 85.56 0.52 5.99 16 8 N -0.67 -28.54 5.50 -499.47 -2.75 -31.29 16 9 C 0.22 11.18 2.30 44.17 0.10 11.28 16 10 H -0.02 -1.31 7.84 -2.38 -0.02 -1.33 16 11 C -0.52 -27.92 7.33 25.60 0.19 -27.73 16 12 H 0.06 2.95 7.60 -2.91 -0.02 2.93 16 13 C 0.02 1.10 5.30 84.65 0.45 1.55 16 14 N -0.91 -51.76 11.34 21.45 0.24 -51.52 16 15 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C -0.10 -4.89 5.58 30.59 0.17 -4.72 16 20 C -0.11 -4.95 9.46 71.98 0.68 -4.27 16 21 N -0.55 -14.09 6.15 -174.61 -1.07 -15.16 16 22 H 0.43 8.29 8.96 -92.71 -0.83 7.46 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 3.16 7.40 -2.39 -0.02 3.14 16 31 H 0.33 13.59 8.24 -89.69 -0.74 12.85 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.40 16 33 H 0.06 3.32 6.13 -2.39 -0.01 3.31 16 34 H 0.02 0.95 7.43 -2.39 -0.02 0.93 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 2.24 7.50 -2.39 -0.02 2.22 16 37 H 0.03 1.60 7.37 -2.39 -0.02 1.58 16 Total: -1.00 -63.99 305.36 1.16 -62.83 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.51 Total: 23.25 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 5.33 Total: -12.01 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.69 Total: -118.97 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -63.99 1.16 -62.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.333 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds