Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47251 * 2 1 4 4 C 1.34668 * 126.59138 * 275.04667 * 3 2 1 5 5 N 1.34125 * 108.02098 * 179.74423 * 4 3 2 6 6 C 1.30501 * 109.25524 * 0.36439 * 5 4 3 7 7 C 1.50695 * 125.65108 * 179.89517 * 6 5 4 8 8 N 1.46901 * 109.47564 * 274.69637 * 7 6 5 9 9 C 1.46897 * 111.00586 * 175.54262 * 8 7 6 10 10 H 1.09000 * 109.46855 * 325.92672 * 9 8 7 11 11 C 1.50696 * 109.47181 * 205.93042 * 9 8 7 12 12 H 1.08001 * 120.00240 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00279 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99568 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00234 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47146 * 59.99817 * 15 13 11 17 17 H 1.48500 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47316 * 299.99834 * 15 13 11 19 19 C 1.52993 * 109.47342 * 85.92687 * 9 8 7 20 20 C 1.53006 * 109.47020 * 59.82914 * 19 9 8 21 21 N 1.35045 * 108.69972 * 359.63381 * 6 5 4 22 22 H 0.97004 * 126.39900 * 180.24927 * 21 6 5 23 23 H 1.09004 * 109.47276 * 59.99717 * 1 2 3 24 24 H 1.08995 * 109.47517 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47390 * 299.99845 * 1 2 3 26 26 H 1.09004 * 109.46950 * 239.99850 * 2 1 3 27 27 H 1.08997 * 109.47057 * 119.99952 * 2 1 3 28 28 H 1.08003 * 125.98613 * 359.91789 * 4 3 2 29 29 H 1.08998 * 109.47588 * 154.69259 * 7 6 5 30 30 H 1.09004 * 109.47111 * 34.69140 * 7 6 5 31 31 H 1.00903 * 111.00100 * 51.58164 * 8 7 6 32 32 H 0.96998 * 119.99677 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.47541 * 299.82657 * 19 9 8 34 34 H 1.08999 * 109.47308 * 179.83131 * 19 9 8 35 35 H 1.08995 * 109.46968 * 295.58883 * 20 19 9 36 36 H 1.09003 * 109.46667 * 175.59008 * 20 19 9 37 37 H 1.08992 * 109.46811 * 55.58943 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2103 2.2094 -1.0771 5 7 2.6642 3.3974 -0.6511 6 6 2.7816 3.3725 0.6484 7 6 3.2633 4.5121 1.5088 8 7 4.7309 4.4933 1.5699 9 6 5.2418 5.6524 2.3138 10 1 4.5950 6.5117 2.1365 11 6 6.6394 5.9713 1.8491 12 1 7.1021 5.3725 1.0786 13 6 7.3275 7.0274 2.4077 14 7 6.7639 7.7569 3.3457 15 14 9.0602 7.4222 1.8322 16 1 9.0405 7.7344 0.3805 17 1 9.5761 8.5948 2.5833 18 1 9.9412 6.2517 2.0748 19 6 5.2627 5.3298 3.8092 20 6 6.1671 4.1209 4.0576 21 7 2.3946 2.1582 1.0949 22 1 2.3764 1.8636 2.0189 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0182 1.9343 -2.1037 29 1 2.8564 4.4054 2.5144 30 1 2.9296 5.4571 1.0802 31 1 5.1309 4.4527 0.6444 32 1 7.2479 8.5001 3.7385 33 1 4.2513 5.1022 4.1461 34 1 5.6446 6.1888 4.3610 35 1 5.7427 3.2434 3.5700 36 1 6.2444 3.9392 5.1296 37 1 7.1584 4.3191 3.6502 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719163201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = 37.699825 kcal Electronic energy + Delta-G solvation = -16702.035772 eV Core-core repulsion = 14093.479442 eV Total energy + Delta-G solvation = -2608.556330 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85229 -36.34770 -34.18979 -32.71960 -32.04169 -30.83583 -28.61021 -26.48499 -24.49406 -23.21151 -23.04669 -20.77406 -20.09637 -19.04240 -17.36195 -16.19707 -15.17694 -14.81412 -14.53698 -14.47912 -13.81814 -13.63223 -13.41377 -13.25493 -12.65488 -12.49195 -12.14888 -11.87513 -11.65676 -11.40448 -11.31860 -10.90213 -10.77802 -10.41414 -10.11616 -9.78594 -9.74977 -9.67899 -9.43322 -8.81649 -8.46894 -8.04031 -7.29915 -6.01641 -4.06829 2.22051 3.28890 3.33042 3.37146 3.37811 3.41129 4.41874 4.67708 4.83680 4.88204 5.13665 5.29526 5.40148 5.46596 5.51386 5.62796 5.67097 5.71760 5.97910 6.08387 6.20138 6.46898 6.49694 6.62675 6.81075 6.97054 7.16944 7.25070 7.44874 7.59291 7.70757 7.78604 7.82000 8.23249 8.34389 8.37961 8.62511 9.00881 9.57812 11.04401 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042770 B = 0.004930 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.512052 B = 5678.175376 C = 5921.323949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.037 4.037 4 C -0.025 4.025 5 N -0.491 5.491 6 C 0.233 3.767 7 C 0.140 3.860 8 N -0.680 5.680 9 C 0.216 3.784 10 H 0.005 0.995 11 C -0.512 4.512 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.103 4.103 20 C -0.120 4.120 21 N -0.556 5.556 22 H 0.416 0.584 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.163 0.837 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.340 0.660 32 H 0.261 0.739 33 H 0.008 0.992 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.013 0.987 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -12.671 -2.867 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.174 4.174 5 N -0.211 5.211 6 C -0.032 4.032 7 C 0.009 3.991 8 N -0.313 5.313 9 C 0.108 3.892 10 H 0.022 0.978 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.142 4.142 20 C -0.177 4.177 21 N -0.158 5.158 22 H 0.254 0.746 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.937 -12.225 -2.745 15.992 hybrid contribution 0.598 0.110 0.055 0.611 sum -9.339 -12.115 -2.690 15.531 Atomic orbital electron populations 1.21775 0.94756 1.01574 1.02358 1.19925 0.95744 0.89492 1.03143 1.21154 1.10118 0.96374 0.87624 1.22018 1.06429 0.90600 0.98315 1.70270 1.19211 1.23074 1.08530 1.23445 1.01304 0.87434 0.90982 1.20296 0.92186 0.90990 0.95668 1.60835 1.01292 1.47113 1.22105 1.19178 0.94549 0.84951 0.90476 0.97785 1.21126 0.99384 1.13472 1.21108 0.92283 1.24869 0.98064 0.95905 0.94934 1.69868 1.37484 1.19065 1.26417 0.86614 0.84600 0.77754 0.78784 1.20290 1.21350 1.20241 1.21458 0.95161 0.98717 0.98847 1.21451 1.01350 0.98290 0.96604 1.43139 1.50612 1.12537 1.09556 0.74610 0.92160 0.92304 0.92949 0.89735 0.91444 0.81945 0.90569 0.92780 0.84246 0.92883 0.97282 0.89333 0.94226 0.96762 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.15 0.37 -0.78 16 2 C -0.04 -0.39 6.49 -27.88 -0.18 -0.58 16 3 C -0.04 -0.47 6.49 -81.60 -0.53 -1.00 16 4 C -0.02 -0.37 11.79 -17.81 -0.21 -0.58 16 5 N -0.49 -8.94 11.25 -10.82 -0.12 -9.06 16 6 C 0.23 3.97 7.62 -155.41 -1.18 2.78 16 7 C 0.14 2.55 6.16 -4.98 -0.03 2.52 16 8 N -0.68 -14.37 5.64 -109.23 -0.62 -14.99 16 9 C 0.22 5.30 2.30 -68.87 -0.16 5.14 16 10 H 0.00 0.12 7.71 -51.93 -0.40 -0.28 16 11 C -0.51 -13.74 7.26 -34.44 -0.25 -13.99 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.10 -2.44 5.59 -26.73 -0.15 -2.59 16 20 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 21 N -0.56 -7.67 6.15 -6.54 -0.04 -7.71 16 22 H 0.42 4.70 8.96 -40.82 -0.37 4.34 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.16 2.01 8.06 -52.48 -0.42 1.58 16 29 H 0.08 1.28 7.61 -51.93 -0.40 0.89 16 30 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 31 H 0.34 7.54 8.13 -39.29 -0.32 7.22 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.01 0.19 7.61 -51.93 -0.39 -0.21 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 35 H 0.04 0.82 7.74 -51.93 -0.40 0.42 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 1.39 7.07 -51.93 -0.37 1.03 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -29.41 305.32 -8.50 -37.91 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.87 Total: 7.07 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.07 Total: -9.71 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.15 Total: -56.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.41 -8.50 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.614 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds