Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47251 * 2 1 4 4 C 1.34668 * 126.59138 * 275.04667 * 3 2 1 5 5 N 1.34125 * 108.02098 * 179.74423 * 4 3 2 6 6 C 1.30501 * 109.25524 * 0.36439 * 5 4 3 7 7 C 1.50695 * 125.65108 * 179.89517 * 6 5 4 8 8 N 1.46901 * 109.47564 * 274.69637 * 7 6 5 9 9 C 1.46897 * 111.00586 * 175.54262 * 8 7 6 10 10 H 1.09000 * 109.46855 * 325.92672 * 9 8 7 11 11 C 1.50696 * 109.47181 * 205.93042 * 9 8 7 12 12 H 1.08001 * 120.00240 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00279 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99568 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00234 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47146 * 59.99817 * 15 13 11 17 17 H 1.48500 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47316 * 299.99834 * 15 13 11 19 19 C 1.52993 * 109.47342 * 85.92687 * 9 8 7 20 20 C 1.53006 * 109.47020 * 59.82914 * 19 9 8 21 21 N 1.35045 * 108.69972 * 359.63381 * 6 5 4 22 22 H 0.97004 * 126.39900 * 180.24927 * 21 6 5 23 23 H 1.09004 * 109.47276 * 59.99717 * 1 2 3 24 24 H 1.08995 * 109.47517 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47390 * 299.99845 * 1 2 3 26 26 H 1.09004 * 109.46950 * 239.99850 * 2 1 3 27 27 H 1.08997 * 109.47057 * 119.99952 * 2 1 3 28 28 H 1.08003 * 125.98613 * 359.91789 * 4 3 2 29 29 H 1.08998 * 109.47588 * 154.69259 * 7 6 5 30 30 H 1.09004 * 109.47111 * 34.69140 * 7 6 5 31 31 H 1.00903 * 111.00100 * 51.58164 * 8 7 6 32 32 H 0.96998 * 119.99677 * 180.02562 * 14 13 11 33 33 H 1.09003 * 109.47541 * 299.82657 * 19 9 8 34 34 H 1.08999 * 109.47308 * 179.83131 * 19 9 8 35 35 H 1.08995 * 109.46968 * 295.58883 * 20 19 9 36 36 H 1.09003 * 109.46667 * 175.59008 * 20 19 9 37 37 H 1.08992 * 109.46811 * 55.58943 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2103 2.2094 -1.0771 5 7 2.6642 3.3974 -0.6511 6 6 2.7816 3.3725 0.6484 7 6 3.2633 4.5121 1.5088 8 7 4.7309 4.4933 1.5699 9 6 5.2418 5.6524 2.3138 10 1 4.5950 6.5117 2.1365 11 6 6.6394 5.9713 1.8491 12 1 7.1021 5.3725 1.0786 13 6 7.3275 7.0274 2.4077 14 7 6.7639 7.7569 3.3457 15 14 9.0602 7.4222 1.8322 16 1 9.0405 7.7344 0.3805 17 1 9.5761 8.5948 2.5833 18 1 9.9412 6.2517 2.0748 19 6 5.2627 5.3298 3.8092 20 6 6.1671 4.1209 4.0576 21 7 2.3946 2.1582 1.0949 22 1 2.3764 1.8636 2.0189 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0182 1.9343 -2.1037 29 1 2.8564 4.4054 2.5144 30 1 2.9296 5.4571 1.0802 31 1 5.1309 4.4527 0.6444 32 1 7.2479 8.5001 3.7385 33 1 4.2513 5.1022 4.1461 34 1 5.6446 6.1888 4.3610 35 1 5.7427 3.2434 3.5700 36 1 6.2444 3.9392 5.1296 37 1 7.1584 4.3191 3.6502 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719163201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = 18.740229 kcal Electronic energy + Delta-G solvation = -16702.857922 eV Core-core repulsion = 14093.479442 eV Total energy + Delta-G solvation = -2609.378480 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.01981 -38.14968 -35.23431 -34.39579 -33.26130 -32.62212 -29.98605 -28.14974 -26.02890 -24.95435 -24.10274 -21.93131 -21.32099 -20.88481 -18.78993 -17.90703 -16.90334 -16.20908 -15.99496 -15.61508 -15.24834 -15.03662 -14.79303 -14.42704 -14.22282 -13.95064 -13.64071 -13.22073 -12.99771 -12.78559 -12.63962 -12.44186 -12.40542 -12.00271 -11.97376 -11.64222 -11.32067 -10.96405 -10.87965 -10.81219 -10.52871 -9.27061 -9.00243 -8.09442 -6.21191 1.08117 1.43692 1.44131 1.51726 2.12473 2.21891 2.44118 3.19477 3.47366 3.85409 3.97490 4.11396 4.24360 4.45235 4.49081 4.60346 4.68480 4.76914 4.79155 4.81987 4.95392 5.02557 5.09121 5.29691 5.36985 5.38235 5.45227 5.55476 5.70744 5.83058 5.85262 5.88533 6.28226 6.39807 6.53793 6.71305 6.96874 7.18448 7.46957 8.95321 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042770 B = 0.004930 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.512052 B = 5678.175376 C = 5921.323949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.011 4.011 4 C -0.055 4.055 5 N -0.526 5.526 6 C 0.208 3.792 7 C 0.148 3.852 8 N -0.671 5.671 9 C 0.221 3.779 10 H -0.030 1.030 11 C -0.526 4.526 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.098 4.098 20 C -0.107 4.107 21 N -0.545 5.545 22 H 0.429 0.571 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.182 0.818 29 H 0.091 0.909 30 H 0.037 0.963 31 H 0.331 0.669 32 H 0.262 0.738 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -14.903 -2.847 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.128 4.128 4 C -0.203 4.203 5 N -0.246 5.246 6 C -0.057 4.057 7 C 0.017 3.983 8 N -0.302 5.302 9 C 0.113 3.887 10 H -0.012 1.012 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.179 4.179 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.137 4.137 20 C -0.165 4.165 21 N -0.149 5.149 22 H 0.269 0.731 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.199 0.801 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.316 -14.474 -2.710 17.979 hybrid contribution 0.618 0.733 0.006 0.959 sum -9.698 -13.741 -2.704 17.034 Atomic orbital electron populations 1.21746 0.93706 1.02868 1.01802 1.20120 0.96453 0.86772 1.04759 1.21800 1.07083 0.97504 0.86455 1.22469 1.07644 0.90154 1.00038 1.70171 1.19951 1.25133 1.09390 1.22938 1.03663 0.88332 0.90744 1.20158 0.90172 0.91242 0.96767 1.60775 1.03214 1.44983 1.21231 1.18991 0.93091 0.84950 0.91689 1.01250 1.21382 1.00486 1.13598 1.20995 0.92906 1.25569 1.01478 0.95843 0.95052 1.69993 1.38732 1.19374 1.27234 0.85692 0.80508 0.77637 0.78284 1.20067 1.20926 1.19696 1.21323 0.96454 0.98377 0.97554 1.21309 0.99450 0.97743 0.97983 1.43092 1.49645 1.11579 1.10577 0.73108 0.92669 0.90111 0.93609 0.88045 0.89904 0.80063 0.89070 0.94464 0.85187 0.92924 0.95427 0.92187 0.93031 0.94627 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 71.98 0.71 -1.07 16 2 C -0.04 -0.61 6.49 29.85 0.19 -0.41 16 3 C -0.01 -0.27 6.49 40.95 0.27 0.00 16 4 C -0.06 -1.59 11.79 83.52 0.98 -0.61 16 5 N -0.53 -19.10 11.25 -188.13 -2.12 -21.21 16 6 C 0.21 6.98 7.62 138.13 1.05 8.03 16 7 C 0.15 5.42 6.16 85.56 0.53 5.94 16 8 N -0.67 -28.57 5.64 -499.49 -2.82 -31.39 16 9 C 0.22 11.06 2.30 44.17 0.10 11.17 16 10 H -0.03 -1.68 7.71 -2.39 -0.02 -1.70 16 11 C -0.53 -28.69 7.26 25.60 0.19 -28.51 16 12 H 0.05 2.89 7.60 -2.91 -0.02 2.86 16 13 C 0.02 1.10 5.30 84.65 0.45 1.55 16 14 N -0.91 -52.12 11.32 21.45 0.24 -51.87 16 15 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 C -0.10 -4.64 5.59 30.59 0.17 -4.47 16 20 C -0.11 -4.60 9.52 71.98 0.69 -3.92 16 21 N -0.55 -14.07 6.15 -174.60 -1.07 -15.14 16 22 H 0.43 8.66 8.96 -92.71 -0.83 7.83 16 23 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.09 3.01 7.61 -2.39 -0.02 3.00 16 30 H 0.04 1.49 7.94 -2.38 -0.02 1.47 16 31 H 0.33 15.00 8.13 -89.69 -0.73 14.27 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.03 1.16 7.61 -2.39 -0.02 1.15 16 34 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 35 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.03 1.58 7.07 -2.39 -0.02 1.56 16 Total: -1.00 -63.70 305.32 1.10 -62.60 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.50 Total: 23.50 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 5.33 Total: -12.29 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -5.76 Total: -119.62 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.70 1.10 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719163201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.343 kcal (2) G-P(sol) polarization free energy of solvation -63.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds