Wall clock time and date at job start Mon Mar 30 2020 03:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.04397 * 2 1 4 4 N 1.34946 * 107.75135 * 180.27660 * 3 2 1 5 5 C 1.46497 * 126.03930 * 179.74874 * 4 3 2 6 6 N 1.40083 * 107.92096 * 359.74924 * 4 3 2 7 7 C 1.30834 * 108.21173 * 0.02562 * 6 4 3 8 8 C 1.50693 * 125.90259 * 179.97438 * 7 6 4 9 9 N 1.46908 * 109.47347 * 90.02444 * 8 7 6 10 10 C 1.46894 * 110.99955 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47779 * 324.99869 * 10 9 8 12 12 C 1.52998 * 109.47018 * 85.00186 * 10 9 8 13 13 C 1.53002 * 109.47229 * 204.99899 * 10 9 8 14 14 C 1.50706 * 109.47153 * 64.99752 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 H 1.09002 * 109.46595 * 270.14352 * 1 2 3 23 23 H 1.08997 * 109.46857 * 30.14201 * 1 2 3 24 24 H 1.09003 * 109.46864 * 150.14416 * 1 2 3 25 25 H 1.08003 * 126.12302 * 0.02628 * 3 2 1 26 26 H 1.08994 * 109.47185 * 269.97110 * 5 4 3 27 27 H 1.08995 * 109.47057 * 29.97490 * 5 4 3 28 28 H 1.08999 * 109.47207 * 149.97412 * 5 4 3 29 29 H 1.09002 * 109.47128 * 330.02554 * 8 7 6 30 30 H 1.09003 * 109.47028 * 210.02150 * 8 7 6 31 31 H 1.00893 * 111.00020 * 303.95580 * 9 8 7 32 32 H 1.09001 * 109.46923 * 299.99707 * 12 10 9 33 33 H 1.08995 * 109.47190 * 60.00037 * 12 10 9 34 34 H 1.09007 * 109.46878 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.47178 * 305.00542 * 13 10 9 36 36 H 1.08993 * 109.47411 * 185.00225 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0941 0.0000 4 7 3.5845 0.6706 -0.0062 5 6 4.7746 1.5248 -0.0136 6 7 3.5754 -0.7302 -0.0043 7 6 2.3300 -1.1310 0.0022 8 6 1.8628 -2.5637 0.0058 9 7 1.7173 -3.0279 1.3920 10 6 1.2616 -4.4237 1.4347 11 1 0.5776 -4.6082 0.6063 12 6 2.4677 -5.3577 1.3178 13 6 0.5408 -4.6847 2.7588 14 6 -0.7147 -3.8534 2.8197 15 1 -0.9729 -3.2042 1.9962 16 6 -1.5337 -3.9216 3.9268 17 7 -1.2220 -4.7162 4.9273 18 14 -3.0903 -2.8917 4.0020 19 1 -2.7851 -1.5782 4.6241 20 1 -3.6103 -2.6794 2.6273 21 1 -4.1128 -3.5985 4.8143 22 1 -0.3632 0.0026 1.0277 23 1 -0.3633 0.8887 -0.5160 24 1 -0.3633 -0.8913 -0.5116 25 1 1.9725 2.1223 0.0004 26 1 5.0646 1.7349 -1.0430 27 1 4.5534 2.4605 0.4997 28 1 5.5913 1.0145 0.4970 29 1 2.5939 -3.1856 -0.5107 30 1 0.9016 -2.6337 -0.5035 31 1 2.5788 -2.9126 1.9043 32 1 2.9812 -5.1718 0.3745 33 1 3.1516 -5.1733 2.1463 34 1 2.1296 -6.3935 1.3499 35 1 1.1953 -4.4156 3.5879 36 1 0.2810 -5.7409 2.8290 37 1 -0.4138 -5.2512 4.8882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723523384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:14 Heat of formation + Delta-G solvation = 62.867831 kcal Electronic energy + Delta-G solvation = -16824.266691 eV Core-core repulsion = 14216.801728 eV Total energy + Delta-G solvation = -2607.464964 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06199 -36.81826 -33.99132 -32.74657 -31.50086 -30.33820 -27.81532 -26.83428 -25.68740 -23.82131 -22.66371 -20.54168 -19.98138 -19.19685 -16.72092 -16.38106 -15.54982 -14.75066 -14.41110 -14.34511 -13.60574 -13.39955 -13.18166 -13.15479 -12.80189 -12.36921 -12.33600 -12.07049 -11.91134 -11.62427 -11.37427 -11.08131 -10.97461 -10.64373 -10.34068 -10.19210 -9.98194 -9.55132 -9.11118 -8.37166 -8.12947 -8.07754 -7.52617 -6.12793 -3.76936 2.00412 2.60717 2.94204 3.55800 3.59882 3.75208 4.50847 4.72158 4.86734 4.94820 5.02113 5.18458 5.25938 5.43240 5.54488 5.64389 5.70562 5.77066 5.89781 5.96357 6.01857 6.14603 6.17919 6.36854 6.44442 6.51487 6.60054 6.87586 6.95502 7.16518 7.39949 7.50839 7.88463 7.94083 8.11871 8.50191 8.75706 9.13418 9.91489 11.27850 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.006617 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.778092 B = 4230.714676 C = 5034.856825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.211 4.211 3 C 0.039 3.961 4 N -0.383 5.383 5 C 0.107 3.893 6 N -0.299 5.299 7 C 0.091 3.909 8 C 0.140 3.860 9 N -0.654 5.654 10 C 0.097 3.903 11 H 0.067 0.933 12 C -0.182 4.182 13 C 0.020 3.980 14 C -0.565 4.565 15 H 0.053 0.947 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 1.070 2.930 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.289 1.289 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.169 0.831 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.333 0.667 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.006 0.994 36 H 0.008 0.992 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 11.231 -11.644 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.222 4.222 3 C -0.106 4.106 4 N -0.166 5.166 5 C -0.035 4.035 6 N -0.122 5.122 7 C -0.075 4.075 8 C 0.009 3.991 9 N -0.285 5.285 10 C -0.012 4.012 11 H 0.085 0.915 12 C -0.241 4.241 13 C -0.017 4.017 14 C -0.604 4.604 15 H 0.072 0.928 16 C -0.196 4.196 17 N -0.565 5.565 18 Si 0.899 3.101 19 H -0.218 1.218 20 H -0.216 1.216 21 H -0.215 1.215 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.186 0.814 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.151 0.849 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.243 11.617 -10.652 17.786 hybrid contribution 1.551 -0.344 -1.158 1.966 sum 9.794 11.272 -11.810 19.038 Atomic orbital electron populations 1.20058 0.89016 1.01379 1.02540 1.20054 0.97380 0.91129 1.13645 1.22224 0.84165 0.99774 1.04402 1.48250 1.05405 1.04666 1.58292 1.21741 0.85910 0.93010 1.02802 1.77248 1.20838 0.88558 1.25571 1.22222 0.89901 0.96781 0.98637 1.20253 0.99642 0.86797 0.92392 1.60496 1.35998 1.22022 1.09945 1.21641 0.93897 0.84251 1.01404 0.91458 1.22586 0.99974 1.01343 1.00208 1.19237 0.95708 0.95882 0.90916 1.21959 1.06852 1.26047 1.05508 0.92845 1.25746 1.02715 0.98219 0.92882 1.70750 1.27106 1.25913 1.32722 0.83535 0.75618 0.75675 0.75234 1.21788 1.21597 1.21498 0.91121 0.92898 0.91693 0.81353 0.91253 0.89786 0.89603 0.94971 0.89449 0.84942 0.94090 0.93104 0.92489 0.97527 0.97425 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.18 36.00 0.37 -0.68 16 2 C -0.21 -3.30 6.10 -105.05 -0.64 -3.94 16 3 C 0.04 0.51 11.40 -17.22 -0.20 0.32 16 4 N -0.38 -5.22 4.01 -68.17 -0.27 -5.49 16 5 C 0.11 0.90 11.47 59.85 0.69 1.58 16 6 N -0.30 -5.05 12.57 33.67 0.42 -4.63 16 7 C 0.09 1.57 6.73 -82.41 -0.55 1.01 16 8 C 0.14 2.43 5.86 -4.98 -0.03 2.40 16 9 N -0.65 -13.11 5.95 -107.99 -0.64 -13.75 16 10 C 0.10 2.03 2.53 -67.72 -0.17 1.86 16 11 H 0.07 1.41 7.80 -51.93 -0.40 1.01 16 12 C -0.18 -3.20 9.16 37.16 0.34 -2.86 16 13 C 0.02 0.52 3.97 -27.88 -0.11 0.41 16 14 C -0.56 -16.27 8.84 -34.44 -0.30 -16.57 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.01 0.17 5.46 -17.82 -0.10 0.08 16 17 N -0.93 -29.26 13.65 55.43 0.76 -28.50 16 18 Si 1.07 26.33 29.90 -169.99 -5.08 21.25 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.96 7.25 -51.93 -0.38 0.58 16 25 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 30 H 0.09 1.48 7.16 -51.93 -0.37 1.11 16 31 H 0.33 6.64 8.46 -39.30 -0.33 6.31 16 32 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 33 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 36 H 0.01 0.21 8.00 -51.93 -0.42 -0.21 16 37 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 LS Contribution 310.70 15.07 4.68 4.68 Total: -1.00 -34.01 310.70 -6.82 -40.82 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.97 Total: 2.02 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.71 Total: -16.39 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.26 Total: -52.38 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.08 Total: 21.25 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.01 -6.82 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723523384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.691 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds