Wall clock time and date at job start Mon Mar 30 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 125.90109 * 2 1 4 4 N 1.40081 * 108.20671 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03634 * 180.02562 * 4 3 2 6 6 C 1.34950 * 107.92725 * 359.75861 * 4 3 2 7 7 C 1.35319 * 107.74284 * 0.38778 * 6 4 3 8 8 C 1.50693 * 126.03801 * 179.87175 * 7 6 4 9 9 N 1.46908 * 109.47347 * 259.69316 * 8 7 6 10 10 C 1.46894 * 110.99955 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47779 * 324.99869 * 10 9 8 12 12 C 1.52998 * 109.47018 * 85.00186 * 10 9 8 13 13 C 1.53002 * 109.47229 * 204.99899 * 10 9 8 14 14 C 1.50706 * 109.47153 * 64.99752 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.09002 * 109.47077 * 270.02267 * 1 2 3 23 23 H 1.09001 * 109.47368 * 30.02072 * 1 2 3 24 24 H 1.08999 * 109.47320 * 150.02173 * 1 2 3 25 25 H 1.08998 * 109.47386 * 89.97257 * 5 4 3 26 26 H 1.08999 * 109.47322 * 209.97615 * 5 4 3 27 27 H 1.09005 * 109.47151 * 329.97138 * 5 4 3 28 28 H 1.07996 * 126.12605 * 180.23730 * 6 4 3 29 29 H 1.09002 * 109.47128 * 139.69426 * 8 7 6 30 30 H 1.09003 * 109.47028 * 19.69022 * 8 7 6 31 31 H 1.00904 * 110.99848 * 56.04922 * 9 8 7 32 32 H 1.09007 * 109.46878 * 179.97438 * 12 10 9 33 33 H 1.09001 * 109.46923 * 299.99707 * 12 10 9 34 34 H 1.08995 * 109.47190 * 60.00037 * 12 10 9 35 35 H 1.09004 * 109.47178 * 305.00542 * 13 10 9 36 36 H 1.08993 * 109.47411 * 185.00225 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1331 0.0006 8 6 1.8599 -2.5657 0.0012 9 7 1.4795 -2.9574 -1.3626 10 6 1.0183 -4.3516 -1.4006 11 1 1.5882 -4.9426 -0.6837 12 6 -0.4677 -4.4072 -1.0407 13 6 1.2240 -4.9186 -2.8067 14 6 2.6982 -4.9778 -3.1139 15 1 3.4165 -4.6446 -2.3795 16 6 3.1299 -5.4571 -4.3324 17 7 2.2554 -5.8678 -5.2247 18 14 4.9573 -5.5311 -4.7129 19 1 5.1572 -6.0870 -6.0753 20 1 5.5323 -4.1635 -4.6469 21 1 5.6349 -6.4015 -3.7188 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 5.0820 1.7159 1.0291 26 1 5.6097 0.9981 -0.5118 27 1 4.5567 2.4331 -0.5129 28 1 4.4891 -1.3486 0.0119 29 1 0.9987 -2.6668 0.6618 30 1 2.6654 -3.2104 0.3530 31 1 2.2423 -2.8115 -2.0068 32 1 -0.8099 -5.4417 -1.0693 33 1 -0.6142 -4.0032 -0.0389 34 1 -1.0376 -3.8163 -1.7577 35 1 0.7269 -4.2764 -3.5338 36 1 0.8013 -5.9219 -2.8593 37 1 1.3065 -5.8296 -5.0271 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:12 Heat of formation + Delta-G solvation = 35.304305 kcal Electronic energy + Delta-G solvation = -16809.601972 eV Core-core repulsion = 14200.941764 eV Total energy + Delta-G solvation = -2608.660208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15606 -38.32598 -35.42497 -34.64251 -32.88769 -30.70958 -29.89215 -28.90555 -26.83219 -25.19102 -24.38677 -21.61731 -21.27871 -20.42876 -18.86609 -17.61161 -16.67991 -16.41540 -15.89909 -15.61844 -15.18857 -15.07694 -14.65682 -14.30957 -14.00457 -13.71237 -13.50831 -13.30007 -13.03228 -12.98217 -12.87228 -12.79180 -12.52961 -12.46124 -12.06173 -11.95064 -11.54170 -11.25731 -10.60972 -10.52470 -10.13243 -9.34078 -9.09530 -8.64307 -6.34054 0.93329 1.51872 1.60374 1.69716 1.76516 1.78802 2.58153 3.18452 3.52716 3.74454 3.93140 4.21909 4.25991 4.32802 4.43359 4.45572 4.52525 4.65399 4.66882 4.71174 4.79130 4.84746 4.99107 5.09583 5.13759 5.17153 5.20120 5.24997 5.35279 5.50602 5.78547 6.01024 6.15731 6.21611 6.43064 6.58466 6.66869 6.79024 7.47468 8.76447 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.006785 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.983174 B = 4125.555376 C = 5160.621751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.081 3.919 3 N -0.337 5.337 4 N -0.382 5.382 5 C 0.095 3.905 6 C 0.060 3.940 7 C -0.248 4.248 8 C 0.145 3.855 9 N -0.678 5.678 10 C 0.102 3.898 11 H 0.025 0.975 12 C -0.128 4.128 13 C 0.011 3.989 14 C -0.605 4.605 15 H 0.051 0.949 16 C -0.039 4.039 17 N -0.940 5.940 18 Si 1.115 2.885 19 H -0.288 1.288 20 H -0.268 1.268 21 H -0.270 1.270 22 H 0.088 0.912 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.195 0.805 29 H 0.080 0.920 30 H 0.027 0.973 31 H 0.338 0.662 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.049 0.951 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 11.707 13.237 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 N -0.161 5.161 4 N -0.164 5.164 5 C -0.044 4.044 6 C -0.088 4.088 7 C -0.260 4.260 8 C 0.015 3.985 9 N -0.310 5.310 10 C -0.008 4.008 11 H 0.043 0.957 12 C -0.186 4.186 13 C -0.027 4.027 14 C -0.643 4.643 15 H 0.069 0.931 16 C -0.236 4.236 17 N -0.578 5.578 18 Si 0.936 3.064 19 H -0.213 1.213 20 H -0.193 1.193 21 H -0.195 1.195 22 H 0.107 0.893 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.127 0.873 27 H 0.108 0.892 28 H 0.212 0.788 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.157 0.843 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.980 12.924 12.145 18.176 hybrid contribution -0.414 -1.097 0.904 1.481 sum 3.566 11.827 13.049 17.968 Atomic orbital electron populations 1.20208 0.85580 1.03554 1.03416 1.22566 0.97947 0.90015 0.97938 1.77175 0.87662 1.23582 1.27690 1.48658 1.05783 1.05131 1.56804 1.22160 0.82857 0.94822 1.04599 1.22772 0.99783 0.85369 1.00842 1.20047 0.92383 0.96119 1.17427 1.20076 0.98424 0.89432 0.90522 1.60656 1.41965 1.20982 1.07387 1.21303 0.95612 0.88100 0.95803 0.95744 1.21724 0.94829 1.00676 1.01362 1.19316 0.96031 0.93783 0.93536 1.22334 0.93002 1.45976 1.03011 0.93110 1.27330 1.10286 0.92913 0.93112 1.70906 1.03058 1.46331 1.37456 0.82967 0.69554 0.77679 0.76170 1.21319 1.19348 1.19493 0.89311 0.91098 0.90056 0.89240 0.87302 0.89221 0.78773 0.90203 0.95455 0.84276 0.93059 0.91459 0.93212 0.99077 0.99175 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.26 71.23 0.73 -1.02 16 2 C 0.08 2.50 7.22 43.10 0.31 2.81 16 3 N -0.34 -10.59 12.58 -47.39 -0.60 -11.19 16 4 N -0.38 -9.94 4.01 -369.56 -1.48 -11.43 16 5 C 0.10 1.46 11.47 127.77 1.47 2.93 16 6 C 0.06 1.60 11.40 83.54 0.95 2.55 16 7 C -0.25 -7.58 5.61 -20.14 -0.11 -7.69 16 8 C 0.15 4.57 5.59 85.55 0.48 5.05 16 9 N -0.68 -26.03 6.30 -495.58 -3.12 -29.15 16 10 C 0.10 4.19 2.59 44.92 0.12 4.31 16 11 H 0.02 1.03 7.80 -2.39 -0.02 1.01 16 12 C -0.13 -4.40 9.41 71.98 0.68 -3.72 16 13 C 0.01 0.55 3.88 29.85 0.12 0.67 16 14 C -0.61 -33.70 8.12 25.60 0.21 -33.49 16 15 H 0.05 2.72 7.49 -2.91 -0.02 2.69 16 16 C -0.04 -2.25 5.46 84.65 0.46 -1.78 16 17 N -0.94 -58.68 13.65 21.45 0.29 -58.39 16 18 Si 1.11 49.81 29.90 68.60 2.05 51.86 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 2.19 7.96 -2.39 -0.02 2.17 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.08 2.32 7.44 -2.39 -0.02 2.30 16 30 H 0.03 0.86 8.05 -2.39 -0.02 0.84 16 31 H 0.34 14.76 7.20 -89.69 -0.65 14.11 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.94 7.45 -2.39 -0.02 1.92 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H -0.01 -0.52 8.01 -2.39 -0.02 -0.54 16 36 H -0.01 -0.56 8.00 -2.39 -0.02 -0.58 16 37 H 0.25 16.19 7.22 -92.71 -0.67 15.53 16 Total: -1.00 -69.93 310.46 3.04 -66.89 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.49 Total: 20.79 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 5.41 Total: -29.39 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.91 Total: -110.15 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -69.93 3.04 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.195 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds