Wall clock time and date at job start Mon Mar 30 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30498 * 125.64626 * 2 1 4 4 C 1.34129 * 109.25228 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02328 * 359.72942 * 4 3 2 6 6 N 1.35043 * 125.65066 * 180.02562 * 2 1 3 7 7 C 1.46497 * 126.39553 * 359.96638 * 6 2 1 8 8 C 1.53001 * 109.47330 * 85.00019 * 7 6 2 9 9 N 1.46900 * 109.47206 * 179.97438 * 8 7 6 10 10 C 1.46900 * 110.99503 * 180.02562 * 9 8 7 11 11 H 1.08995 * 109.47586 * 35.00637 * 10 9 8 12 12 C 1.53005 * 109.47181 * 274.99918 * 10 9 8 13 13 C 1.53002 * 109.46648 * 155.00453 * 10 9 8 14 14 C 1.50706 * 109.47153 * 294.99361 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.08995 * 109.47489 * 269.96117 * 1 2 3 23 23 H 1.09001 * 109.46851 * 29.96378 * 1 2 3 24 24 H 1.09001 * 109.47126 * 149.95946 * 1 2 3 25 25 H 1.08001 * 125.99058 * 180.02562 * 4 3 2 26 26 H 1.07990 * 126.59352 * 180.27812 * 5 4 3 27 27 H 1.09001 * 109.47274 * 324.99775 * 7 6 2 28 28 H 1.08999 * 109.47100 * 205.00232 * 7 6 2 29 29 H 1.09000 * 109.46512 * 60.00094 * 8 7 6 30 30 H 1.08999 * 109.47203 * 300.00150 * 8 7 6 31 31 H 1.00892 * 110.99857 * 303.95795 * 9 8 7 32 32 H 1.08996 * 109.46870 * 300.00309 * 12 10 9 33 33 H 1.09001 * 109.46894 * 60.00465 * 12 10 9 34 34 H 1.09002 * 109.46592 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47178 * 175.00151 * 13 10 9 36 36 H 1.08993 * 109.47411 * 54.99833 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2942 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5651 -2.9373 -1.4373 9 7 1.1128 -4.3349 -1.4373 10 6 0.8368 -4.7989 -2.8035 11 1 1.5441 -4.3387 -3.4934 12 6 -0.5886 -4.4064 -3.1972 13 6 0.9819 -6.3208 -2.8643 14 6 2.4158 -6.6998 -2.5966 15 1 3.1499 -5.9320 -2.4022 16 6 2.7903 -8.0267 -2.6000 17 7 1.8952 -8.9620 -2.8315 18 14 4.5674 -8.4965 -2.2675 19 1 4.7071 -9.9740 -2.3207 20 1 5.4433 -7.8792 -3.2957 21 1 4.9646 -8.0098 -0.9220 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8896 -0.5145 25 1 4.4098 1.3411 -0.0003 26 1 4.4776 -1.2831 0.0105 27 1 0.9301 -2.5772 0.5895 28 1 2.6168 -3.1237 0.4335 29 1 2.4777 -2.8511 -2.0271 30 1 0.7909 -2.3045 -1.8712 31 1 1.7860 -4.9327 -0.9818 32 1 -1.2959 -4.8667 -2.5073 33 1 -0.6920 -3.3221 -3.1539 34 1 -0.7935 -4.7511 -4.2108 35 1 0.6914 -6.6743 -3.8536 36 1 0.3389 -6.7774 -2.1120 37 1 0.9723 -8.7181 -3.0038 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:29 Heat of formation + Delta-G solvation = 38.940772 kcal Electronic energy + Delta-G solvation = -16658.342275 eV Core-core repulsion = 14049.839756 eV Total energy + Delta-G solvation = -2608.502519 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07955 -37.21366 -34.63430 -32.90517 -31.76289 -30.79687 -27.42876 -27.12534 -26.60104 -23.26448 -22.33780 -21.35838 -20.02824 -19.48931 -17.05368 -16.78635 -15.86913 -15.49613 -14.59674 -14.53929 -13.84930 -13.78417 -13.56859 -13.29180 -13.01809 -12.84860 -12.48320 -12.33283 -12.16202 -11.57854 -11.44642 -11.37697 -11.00090 -10.86442 -10.56447 -10.20395 -9.98297 -9.75656 -9.48780 -8.66274 -8.44448 -8.35049 -7.98965 -6.46588 -4.17555 2.03944 2.74900 3.13941 3.35489 3.36946 3.55778 4.44395 4.44977 4.57586 4.64012 4.89000 5.08932 5.25213 5.29335 5.34211 5.38120 5.43034 5.61398 5.69625 5.76476 5.81611 5.90218 5.98768 6.06844 6.31405 6.34116 6.64594 6.68749 6.76335 7.11378 7.19521 7.27805 7.69162 7.93770 8.05817 8.10164 8.31931 8.76492 9.55329 10.93962 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.005351 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.934553 B = 5231.164139 C = 6023.637104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.204 3.796 3 N -0.498 5.498 4 C -0.034 4.034 5 C -0.056 4.056 6 N -0.449 5.449 7 C 0.103 3.897 8 C 0.047 3.953 9 N -0.679 5.679 10 C 0.096 3.904 11 H 0.032 0.968 12 C -0.137 4.137 13 C 0.007 3.993 14 C -0.608 4.608 15 H 0.044 0.956 16 C 0.019 3.981 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.288 1.288 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.167 0.833 26 H 0.172 0.828 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.357 0.643 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.013 0.987 36 H 0.018 0.982 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 13.900 5.378 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 N -0.218 5.218 4 C -0.182 4.182 5 C -0.190 4.190 6 N -0.132 5.132 7 C -0.019 4.019 8 C -0.084 4.084 9 N -0.314 5.314 10 C -0.013 4.013 11 H 0.050 0.950 12 C -0.195 4.195 13 C -0.031 4.031 14 C -0.646 4.646 15 H 0.062 0.938 16 C -0.185 4.185 17 N -0.543 5.543 18 Si 0.894 3.106 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.214 1.214 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.185 0.815 26 H 0.190 0.810 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.036 0.964 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.730 13.399 5.641 14.556 hybrid contribution 0.426 0.360 -0.559 0.790 sum -0.305 13.759 5.082 14.671 Atomic orbital electron populations 1.20206 0.85102 1.04126 1.03415 1.23292 0.95726 0.81430 1.05369 1.70219 1.02289 1.28447 1.20820 1.22235 0.94757 0.92750 1.08458 1.22753 0.87275 0.96885 1.12060 1.45443 1.06450 1.07616 1.53700 1.21922 1.02261 0.78387 0.99376 1.22214 0.99210 0.92949 0.93978 1.60538 1.50130 1.00862 1.19866 1.21468 0.94395 0.98248 0.87191 0.95020 1.21820 0.97753 0.99528 1.00410 1.19412 0.97699 0.89254 0.96704 1.21953 0.94097 0.94581 1.53945 0.93762 1.25795 1.05867 0.92836 0.94051 1.70778 1.04147 1.35487 1.43885 0.83580 0.74242 0.76416 0.76337 1.20645 1.21554 1.21445 0.90317 0.89396 0.90462 0.81530 0.81037 0.88159 0.88857 0.95064 0.91116 0.82189 0.92507 0.94285 0.93143 0.96833 0.96359 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.04 36.01 0.36 -0.34 16 2 C 0.20 2.76 7.90 -155.41 -1.23 1.53 16 3 N -0.50 -7.53 11.25 -10.81 -0.12 -7.65 16 4 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 5 C -0.06 -0.71 11.58 -16.56 -0.19 -0.90 16 6 N -0.45 -5.84 2.75 -113.91 -0.31 -6.16 16 7 C 0.10 1.26 5.94 -4.04 -0.02 1.24 16 8 C 0.05 0.69 5.81 -3.82 -0.02 0.67 16 9 N -0.68 -11.89 6.31 -106.72 -0.67 -12.56 16 10 C 0.10 1.91 2.59 -67.71 -0.18 1.73 16 11 H 0.03 0.66 7.80 -51.93 -0.40 0.26 16 12 C -0.14 -2.32 9.42 37.16 0.35 -1.97 16 13 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 14 C -0.61 -16.23 8.12 -34.44 -0.28 -16.51 16 15 H 0.04 1.16 7.49 -52.49 -0.39 0.76 16 16 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 17 N -0.91 -26.95 13.65 55.43 0.76 -26.19 16 18 Si 1.07 24.36 29.90 -169.99 -5.08 19.28 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.73 7.36 -51.93 -0.38 0.35 16 25 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 26 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.10 1.12 7.92 -51.93 -0.41 0.71 16 28 H 0.09 1.09 8.13 -51.93 -0.42 0.66 16 29 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.07 1.02 6.97 -51.93 -0.36 0.65 16 31 H 0.36 6.81 7.21 -39.30 -0.28 6.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 36 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 37 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -30.78 308.09 -8.34 -39.12 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.92 Total: 4.26 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.63 Total: -14.73 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.35 Total: -52.56 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.78 -8.34 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.060 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds