Wall clock time and date at job start Mon Mar 30 2020 03:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30498 * 125.64626 * 2 1 4 4 C 1.34129 * 109.25228 * 180.02562 * 3 2 1 5 5 C 1.34673 * 108.02328 * 359.72942 * 4 3 2 6 6 N 1.35043 * 125.65066 * 180.02562 * 2 1 3 7 7 C 1.46497 * 126.39553 * 359.96638 * 6 2 1 8 8 C 1.53001 * 109.47330 * 85.00019 * 7 6 2 9 9 N 1.46900 * 109.47206 * 179.97438 * 8 7 6 10 10 C 1.46900 * 110.99503 * 180.02562 * 9 8 7 11 11 H 1.08995 * 109.47586 * 35.00637 * 10 9 8 12 12 C 1.53005 * 109.47181 * 274.99918 * 10 9 8 13 13 C 1.53002 * 109.46648 * 155.00453 * 10 9 8 14 14 C 1.50706 * 109.47153 * 294.99361 * 13 10 9 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 10 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 H 1.08995 * 109.47489 * 269.96117 * 1 2 3 23 23 H 1.09001 * 109.46851 * 29.96378 * 1 2 3 24 24 H 1.09001 * 109.47126 * 149.95946 * 1 2 3 25 25 H 1.08001 * 125.99058 * 180.02562 * 4 3 2 26 26 H 1.07990 * 126.59352 * 180.27812 * 5 4 3 27 27 H 1.09001 * 109.47274 * 324.99775 * 7 6 2 28 28 H 1.08999 * 109.47100 * 205.00232 * 7 6 2 29 29 H 1.09000 * 109.46512 * 60.00094 * 8 7 6 30 30 H 1.08999 * 109.47203 * 300.00150 * 8 7 6 31 31 H 1.00892 * 110.99857 * 303.95795 * 9 8 7 32 32 H 1.08996 * 109.46870 * 300.00309 * 12 10 9 33 33 H 1.09001 * 109.46894 * 60.00465 * 12 10 9 34 34 H 1.09002 * 109.46592 * 180.02562 * 12 10 9 35 35 H 1.09004 * 109.47178 * 175.00151 * 13 10 9 36 36 H 1.08993 * 109.47411 * 54.99833 * 13 10 9 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6643 0.0051 6 7 2.2942 -1.0973 -0.0005 7 6 1.8426 -2.4910 -0.0004 8 6 1.5651 -2.9373 -1.4373 9 7 1.1128 -4.3349 -1.4373 10 6 0.8368 -4.7989 -2.8035 11 1 1.5441 -4.3387 -3.4934 12 6 -0.5886 -4.4064 -3.1972 13 6 0.9819 -6.3208 -2.8643 14 6 2.4158 -6.6998 -2.5966 15 1 3.1499 -5.9320 -2.4022 16 6 2.7903 -8.0267 -2.6000 17 7 1.8952 -8.9620 -2.8315 18 14 4.5674 -8.4965 -2.2675 19 1 4.7071 -9.9740 -2.3207 20 1 5.4433 -7.8792 -3.2957 21 1 4.9646 -8.0098 -0.9220 22 1 -0.3634 -0.0007 1.0276 23 1 -0.3633 0.8903 -0.5133 24 1 -0.3633 -0.8896 -0.5145 25 1 4.4098 1.3411 -0.0003 26 1 4.4776 -1.2831 0.0105 27 1 0.9301 -2.5772 0.5895 28 1 2.6168 -3.1237 0.4335 29 1 2.4777 -2.8511 -2.0271 30 1 0.7909 -2.3045 -1.8712 31 1 1.7860 -4.9327 -0.9818 32 1 -1.2959 -4.8667 -2.5073 33 1 -0.6920 -3.3221 -3.1539 34 1 -0.7935 -4.7511 -4.2108 35 1 0.6914 -6.6743 -3.8536 36 1 0.3389 -6.7774 -2.1120 37 1 0.9723 -8.7181 -3.0038 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:29 Heat of formation + Delta-G solvation = 20.083008 kcal Electronic energy + Delta-G solvation = -16659.160009 eV Core-core repulsion = 14049.839756 eV Total energy + Delta-G solvation = -2609.320253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.05208 -38.69379 -35.99716 -34.70452 -32.63450 -32.19996 -28.99310 -28.50237 -27.59613 -25.14304 -23.65172 -22.33384 -21.52221 -20.57578 -18.92582 -17.97461 -17.15937 -16.66907 -15.94571 -15.70871 -15.58938 -15.04550 -14.88084 -14.69186 -13.98251 -13.87780 -13.81687 -13.32647 -13.29386 -13.12645 -13.07879 -12.74869 -12.56477 -12.48429 -12.17345 -11.97029 -11.46669 -10.99253 -10.67233 -10.60779 -10.55616 -9.44654 -9.30474 -8.67770 -6.39189 1.06773 1.52080 1.59012 1.77321 1.77857 2.14735 2.55434 3.12279 3.32416 3.61358 3.65477 3.89120 3.98023 4.10943 4.28015 4.39055 4.44715 4.46637 4.55538 4.67527 4.69201 4.71632 4.86465 4.89936 5.03382 5.05574 5.13382 5.24710 5.36399 5.39651 5.82291 5.93686 6.11834 6.16875 6.23313 6.42711 6.57830 7.12189 7.42576 8.73070 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.005351 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.934553 B = 5231.164139 C = 6023.637104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.194 3.806 3 N -0.532 5.532 4 C -0.051 4.051 5 C -0.062 4.062 6 N -0.453 5.453 7 C 0.112 3.888 8 C 0.055 3.945 9 N -0.675 5.675 10 C 0.103 3.897 11 H 0.020 0.980 12 C -0.129 4.129 13 C 0.010 3.990 14 C -0.610 4.610 15 H 0.049 0.951 16 C -0.034 4.034 17 N -0.937 5.937 18 Si 1.113 2.887 19 H -0.287 1.287 20 H -0.274 1.274 21 H -0.265 1.265 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.186 0.814 26 H 0.194 0.806 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.348 0.652 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.051 0.949 35 H -0.009 1.009 36 H -0.001 1.001 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 14.947 6.137 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 N -0.252 5.252 4 C -0.198 4.198 5 C -0.195 4.195 6 N -0.136 5.136 7 C -0.010 4.010 8 C -0.075 4.075 9 N -0.308 5.308 10 C -0.007 4.007 11 H 0.038 0.962 12 C -0.187 4.187 13 C -0.027 4.027 14 C -0.648 4.648 15 H 0.068 0.932 16 C -0.232 4.232 17 N -0.574 5.574 18 Si 0.935 3.065 19 H -0.213 1.213 20 H -0.200 1.200 21 H -0.190 1.190 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.203 0.797 26 H 0.211 0.789 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.035 0.965 30 H 0.095 0.905 31 H 0.167 0.833 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.009 0.991 36 H 0.017 0.983 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.144 14.485 6.401 15.837 hybrid contribution 0.220 0.091 -0.812 0.847 sum 0.076 14.576 5.588 15.611 Atomic orbital electron populations 1.20328 0.83073 1.04716 1.04599 1.23906 0.97011 0.81266 1.04638 1.70215 1.03316 1.29586 1.22132 1.22666 0.94918 0.93616 1.08556 1.23176 0.87872 0.97076 1.11377 1.45520 1.06641 1.07665 1.53800 1.21832 1.03283 0.78164 0.97727 1.22176 0.98618 0.91082 0.95632 1.60542 1.50024 1.02166 1.18053 1.21297 0.96127 0.94870 0.88378 0.96174 1.21734 0.95486 1.01114 1.00403 1.19322 0.96217 0.92600 0.94604 1.22308 0.95234 0.94689 1.52605 0.93245 1.27273 1.09184 0.93389 0.93389 1.70912 1.03909 1.36217 1.46396 0.82974 0.69912 0.75898 0.77716 1.21278 1.19999 1.18980 0.88798 0.88918 0.89698 0.79733 0.78925 0.86700 0.88090 0.96487 0.90468 0.83274 0.92535 0.91805 0.92982 0.99124 0.98257 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.04 71.24 0.72 -0.51 16 2 C 0.19 4.89 7.90 138.13 1.09 5.98 16 3 N -0.53 -15.43 11.25 -188.12 -2.12 -17.55 16 4 C -0.05 -1.27 11.87 83.52 0.99 -0.28 16 5 C -0.06 -1.45 11.58 83.09 0.96 -0.48 16 6 N -0.45 -10.83 2.75 -514.29 -1.41 -12.24 16 7 C 0.11 2.46 5.94 86.38 0.51 2.98 16 8 C 0.06 1.50 5.81 86.30 0.50 2.00 16 9 N -0.67 -22.62 6.31 -491.56 -3.10 -25.72 16 10 C 0.10 4.00 2.59 44.92 0.12 4.12 16 11 H 0.02 0.83 7.80 -2.39 -0.02 0.81 16 12 C -0.13 -4.18 9.42 71.98 0.68 -3.50 16 13 C 0.01 0.49 3.88 29.85 0.12 0.60 16 14 C -0.61 -32.57 8.12 25.60 0.21 -32.37 16 15 H 0.05 2.54 7.49 -2.91 -0.02 2.52 16 16 C -0.03 -1.90 5.46 84.65 0.46 -1.44 16 17 N -0.94 -56.56 13.65 21.45 0.29 -56.27 16 18 Si 1.11 48.23 29.90 68.60 2.05 50.28 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.37 7.36 -2.39 -0.02 1.35 16 25 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 26 H 0.19 3.44 8.06 -2.92 -0.02 3.42 16 27 H 0.11 2.22 7.92 -2.39 -0.02 2.20 16 28 H 0.10 2.09 8.13 -2.39 -0.02 2.07 16 29 H 0.02 0.52 8.05 -2.39 -0.02 0.50 16 30 H 0.08 2.01 6.97 -2.39 -0.02 2.00 16 31 H 0.35 12.85 7.21 -89.70 -0.65 12.20 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.74 7.45 -2.39 -0.02 1.72 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 36 H 0.00 -0.05 8.00 -2.39 -0.02 -0.07 16 37 H 0.26 15.69 7.22 -92.71 -0.67 15.02 16 Total: -1.00 -65.94 308.09 2.56 -63.39 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.49 Total: 21.02 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 6.35 Total: -22.90 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -6.34 Total: -111.78 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.05 Total: 50.28 kcal Total: -65.94 2.56 -63.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.469 kcal (2) G-P(sol) polarization free energy of solvation -65.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds