Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46905 * 109.46592 * 2 1 4 4 C 1.46896 * 110.99873 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47317 * 179.97438 * 4 3 2 6 6 N 1.30498 * 125.65146 * 269.95600 * 5 4 3 7 7 C 1.34128 * 109.25660 * 180.02562 * 6 5 4 8 8 C 1.34669 * 108.02336 * 0.02562 * 7 6 5 9 9 N 1.35044 * 125.65011 * 89.99497 * 5 4 3 10 10 C 1.46503 * 126.39660 * 359.70746 * 9 5 4 11 11 H 1.09004 * 109.47193 * 359.97438 * 10 9 5 12 12 C 1.53000 * 109.47187 * 119.99644 * 10 9 5 13 13 C 1.52997 * 109.46923 * 239.99649 * 10 9 5 14 14 C 1.50708 * 109.46967 * 174.99881 * 13 10 9 15 15 H 1.07990 * 120.00176 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99718 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99924 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47068 * 59.99970 * 18 16 14 20 20 H 1.48496 * 109.47217 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47221 * 299.99988 * 18 16 14 22 22 H 1.08993 * 109.47698 * 300.00306 * 1 2 3 23 23 H 1.09005 * 109.46948 * 60.00795 * 1 2 3 24 24 H 1.08995 * 109.46625 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47357 * 240.00382 * 2 1 3 26 26 H 1.08997 * 109.47232 * 119.99002 * 2 1 3 27 27 H 1.00897 * 110.99926 * 303.94924 * 3 2 1 28 28 H 1.08993 * 109.47461 * 59.99396 * 4 3 2 29 29 H 1.09011 * 109.47020 * 299.99537 * 4 3 2 30 30 H 1.07998 * 125.98727 * 179.97438 * 7 6 5 31 31 H 1.07996 * 126.59301 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.46977 * 60.00331 * 12 10 9 33 33 H 1.09005 * 109.46724 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47192 * 299.99847 * 12 10 9 35 35 H 1.08994 * 109.47742 * 294.99788 * 13 10 9 36 36 H 1.09004 * 109.47407 * 55.00339 * 13 10 9 37 37 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4880 1.4244 -0.0006 5 6 3.9522 2.8581 -0.0012 6 7 4.1868 3.5812 -1.0619 7 6 4.5836 4.8054 -0.6839 8 6 4.5959 4.8422 0.6622 9 7 4.1950 3.6073 1.0958 10 6 4.0507 3.1800 2.4897 11 1 3.7102 2.1449 2.5190 12 6 5.4008 3.2936 3.2004 13 6 3.0271 4.0732 3.1935 14 6 2.7872 3.5587 4.5896 15 1 3.3126 2.6827 4.9399 16 6 1.8970 4.2066 5.4195 17 7 1.2576 5.2738 4.9930 18 14 1.6002 3.5694 7.1502 19 1 2.8763 3.5865 7.9096 20 1 0.6067 4.4363 7.8332 21 1 1.0823 2.1793 7.0839 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.6441 1.9013 -0.7814 28 1 3.8646 0.9205 -0.8907 29 1 3.8654 0.9203 0.8893 30 1 4.8478 5.6187 -1.3434 31 1 4.8685 5.6845 1.2808 32 1 5.7408 4.3287 3.1711 33 1 5.2932 2.9760 4.2376 34 1 6.1300 2.6573 2.6990 35 1 3.4078 5.0933 3.2426 36 1 2.0904 4.0614 2.6361 37 1 0.6310 5.7293 5.5767 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829189206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = 44.021162 kcal Electronic energy + Delta-G solvation = -17071.113032 eV Core-core repulsion = 14462.830816 eV Total energy + Delta-G solvation = -2608.282217 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.57053 -36.38325 -35.54791 -32.63318 -31.44210 -30.02563 -28.44920 -27.11867 -24.77744 -23.84151 -21.99431 -21.69156 -20.10510 -18.76467 -16.90044 -16.05933 -15.49859 -15.33099 -14.64347 -14.16353 -14.05749 -13.95148 -13.39168 -13.03303 -12.83202 -12.42212 -12.13024 -11.98323 -11.61092 -11.58932 -11.49710 -11.06783 -11.03422 -10.93797 -10.62070 -10.18710 -9.97268 -9.53517 -9.25845 -8.76823 -8.46249 -8.33549 -7.84967 -6.10657 -4.15008 2.61098 3.26651 3.31861 3.32749 3.48566 3.55987 4.36707 4.44301 4.85990 5.13730 5.22884 5.25155 5.33879 5.40835 5.54442 5.62836 5.66323 5.80145 5.86611 5.91983 5.99220 6.05755 6.20966 6.29322 6.37479 6.59735 6.66771 6.97352 7.08280 7.28741 7.45688 7.48817 7.59484 7.75348 7.91994 8.21946 8.60845 8.88980 9.49157 11.00486 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.007922 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.187975 B = 3533.629412 C = 4541.418503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 N -0.682 5.682 4 C 0.151 3.849 5 C 0.192 3.808 6 N -0.501 5.501 7 C -0.049 4.049 8 C -0.037 4.037 9 N -0.421 5.421 10 C 0.127 3.873 11 H 0.092 0.908 12 C -0.147 4.147 13 C 0.026 3.974 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.347 0.653 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.021 0.979 36 H 0.027 0.973 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -7.083 -7.696 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.072 4.072 3 N -0.315 5.315 4 C 0.020 3.980 5 C -0.070 4.070 6 N -0.221 5.221 7 C -0.198 4.198 8 C -0.174 4.174 9 N -0.101 5.101 10 C 0.026 3.974 11 H 0.110 0.890 12 C -0.205 4.205 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.179 0.821 31 H 0.185 0.815 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.578 -7.225 -7.587 11.071 hybrid contribution 0.028 0.000 0.952 0.952 sum 3.606 -7.225 -6.635 10.451 Atomic orbital electron populations 1.21760 0.94844 1.01447 1.02788 1.21902 0.95927 0.89126 1.00272 1.60440 1.06579 1.13595 1.50859 1.20034 0.88310 0.87992 1.01625 1.22746 1.06109 0.96068 0.82114 1.70077 1.19157 1.04158 1.28751 1.22073 1.08958 0.95958 0.92772 1.22626 1.08504 0.89967 0.96293 1.45825 1.45777 1.10079 1.08381 1.21957 0.98180 1.01386 0.75890 0.88989 1.22051 0.95002 1.01676 1.01767 1.19368 0.92832 0.94040 0.94916 1.20962 1.24896 1.12814 0.97402 0.92366 1.24978 0.95598 0.94878 0.98599 1.69958 1.27186 1.18961 1.36628 0.86622 0.78065 0.78878 0.84245 1.20184 1.21210 1.20122 0.91341 0.92945 0.92357 0.95558 0.90899 0.83483 0.92750 0.89781 0.82067 0.81538 0.92583 0.89746 0.94149 0.96067 0.95496 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.17 37.16 0.38 -1.35 16 2 C 0.06 0.69 6.41 -3.82 -0.02 0.67 16 3 N -0.68 -10.33 6.49 -115.06 -0.75 -11.08 16 4 C 0.15 2.30 5.82 -4.98 -0.03 2.27 16 5 C 0.19 3.52 7.41 -155.42 -1.15 2.37 16 6 N -0.50 -9.48 11.25 -10.82 -0.12 -9.60 16 7 C -0.05 -0.86 11.87 -17.81 -0.21 -1.07 16 8 C -0.04 -0.68 10.70 -16.56 -0.18 -0.86 16 9 N -0.42 -8.05 2.61 -106.83 -0.28 -8.33 16 10 C 0.13 2.54 2.94 -67.93 -0.20 2.34 16 11 H 0.09 1.83 6.68 -51.93 -0.35 1.48 16 12 C -0.15 -2.60 9.07 37.16 0.34 -2.26 16 13 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 14 C -0.52 -13.86 8.41 -34.44 -0.29 -14.15 16 15 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.35 5.25 8.72 -39.29 -0.34 4.91 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.22 7.09 -51.92 -0.37 0.86 16 30 H 0.16 2.34 8.06 -52.49 -0.42 1.91 16 31 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 32 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 33 H 0.08 1.53 6.95 -51.93 -0.36 1.16 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 309.28 15.07 4.66 4.66 Total: -1.00 -30.06 309.28 -8.35 -38.40 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.98 Total: 5.24 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.59 Total: -9.90 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.41 Total: -54.27 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.06 -8.35 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.424 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds