Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46905 * 109.46592 * 2 1 4 4 C 1.46896 * 110.99873 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47317 * 179.97438 * 4 3 2 6 6 N 1.30498 * 125.65146 * 269.95600 * 5 4 3 7 7 C 1.34128 * 109.25660 * 180.02562 * 6 5 4 8 8 C 1.34669 * 108.02336 * 0.02562 * 7 6 5 9 9 N 1.35044 * 125.65011 * 89.99497 * 5 4 3 10 10 C 1.46503 * 126.39660 * 359.70746 * 9 5 4 11 11 H 1.09004 * 109.47193 * 359.97438 * 10 9 5 12 12 C 1.53000 * 109.47187 * 119.99644 * 10 9 5 13 13 C 1.52997 * 109.46923 * 239.99649 * 10 9 5 14 14 C 1.50708 * 109.46967 * 174.99881 * 13 10 9 15 15 H 1.07990 * 120.00176 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99718 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99924 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47068 * 59.99970 * 18 16 14 20 20 H 1.48496 * 109.47217 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47221 * 299.99988 * 18 16 14 22 22 H 1.08993 * 109.47698 * 300.00306 * 1 2 3 23 23 H 1.09005 * 109.46948 * 60.00795 * 1 2 3 24 24 H 1.08995 * 109.46625 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47357 * 240.00382 * 2 1 3 26 26 H 1.08997 * 109.47232 * 119.99002 * 2 1 3 27 27 H 1.00897 * 110.99926 * 303.94924 * 3 2 1 28 28 H 1.08993 * 109.47461 * 59.99396 * 4 3 2 29 29 H 1.09011 * 109.47020 * 299.99537 * 4 3 2 30 30 H 1.07998 * 125.98727 * 179.97438 * 7 6 5 31 31 H 1.07996 * 126.59301 * 180.02562 * 8 7 6 32 32 H 1.08996 * 109.46977 * 60.00331 * 12 10 9 33 33 H 1.09005 * 109.46724 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47192 * 299.99847 * 12 10 9 35 35 H 1.08994 * 109.47742 * 294.99788 * 13 10 9 36 36 H 1.09004 * 109.47407 * 55.00339 * 13 10 9 37 37 H 0.96999 * 119.99965 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4880 1.4244 -0.0006 5 6 3.9522 2.8581 -0.0012 6 7 4.1868 3.5812 -1.0619 7 6 4.5836 4.8054 -0.6839 8 6 4.5959 4.8422 0.6622 9 7 4.1950 3.6073 1.0958 10 6 4.0507 3.1800 2.4897 11 1 3.7102 2.1449 2.5190 12 6 5.4008 3.2936 3.2004 13 6 3.0271 4.0732 3.1935 14 6 2.7872 3.5587 4.5896 15 1 3.3126 2.6827 4.9399 16 6 1.8970 4.2066 5.4195 17 7 1.2576 5.2738 4.9930 18 14 1.6002 3.5694 7.1502 19 1 2.8763 3.5865 7.9096 20 1 0.6067 4.4363 7.8332 21 1 1.0823 2.1793 7.0839 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0276 -0.0005 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.6441 1.9013 -0.7814 28 1 3.8646 0.9205 -0.8907 29 1 3.8654 0.9203 0.8893 30 1 4.8478 5.6187 -1.3434 31 1 4.8685 5.6845 1.2808 32 1 5.7408 4.3287 3.1711 33 1 5.2932 2.9760 4.2376 34 1 6.1300 2.6573 2.6990 35 1 3.4078 5.0933 3.2426 36 1 2.0904 4.0614 2.6361 37 1 0.6310 5.7293 5.5767 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = 25.389741 kcal Electronic energy + Delta-G solvation = -17071.920952 eV Core-core repulsion = 14462.830816 eV Total energy + Delta-G solvation = -2609.090136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.00089 -37.48661 -37.23477 -34.61675 -32.56977 -31.66328 -29.70082 -28.93626 -26.07167 -25.62675 -23.35510 -22.95402 -21.60877 -20.23007 -18.70461 -17.72047 -16.76610 -16.71089 -16.37192 -15.49510 -15.36058 -15.28804 -14.86963 -14.55152 -14.21253 -14.04550 -13.70197 -13.29295 -13.15298 -12.88344 -12.71837 -12.64242 -12.52112 -12.37424 -12.03089 -11.99035 -11.71727 -11.40146 -10.90511 -10.58569 -10.33231 -9.47954 -9.22024 -8.21414 -6.32962 1.18208 1.42182 1.44517 1.52034 2.02149 2.16955 2.42289 3.13499 3.27776 3.61029 3.85975 3.90449 4.19690 4.24998 4.29782 4.39476 4.45541 4.48187 4.61578 4.66714 4.80940 4.91185 4.95184 4.97933 5.12114 5.21539 5.33425 5.35343 5.41521 5.66038 5.73040 5.90715 6.00447 6.10663 6.33144 6.41946 6.80915 7.18643 7.36408 8.90623 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.007922 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.187975 B = 3533.629412 C = 4541.418503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 N -0.702 5.702 4 C 0.153 3.847 5 C 0.187 3.813 6 N -0.518 5.518 7 C -0.049 4.049 8 C -0.057 4.057 9 N -0.432 5.432 10 C 0.140 3.860 11 H 0.095 0.905 12 C -0.139 4.139 13 C 0.040 3.960 14 C -0.531 4.531 15 H 0.073 0.927 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.267 1.267 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.343 0.657 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.190 0.810 31 H 0.176 0.824 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.066 0.934 35 H -0.004 1.004 36 H -0.017 1.017 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -8.681 -7.487 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.336 5.336 4 C 0.023 3.977 5 C -0.075 4.075 6 N -0.239 5.239 7 C -0.197 4.197 8 C -0.192 4.192 9 N -0.112 5.112 10 C 0.039 3.961 11 H 0.113 0.887 12 C -0.196 4.196 13 C 0.002 3.998 14 C -0.569 4.569 15 H 0.091 0.909 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.789 3.211 19 H -0.187 1.187 20 H -0.214 1.214 21 H -0.191 1.191 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.207 0.793 31 H 0.193 0.807 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.014 0.986 36 H 0.001 0.999 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.436 -8.833 -7.391 12.342 hybrid contribution -0.256 0.521 0.802 0.989 sum 4.180 -8.312 -6.590 11.402 Atomic orbital electron populations 1.21742 0.94448 1.02590 1.01727 1.21972 0.96215 0.87689 1.01235 1.60456 1.06603 1.15474 1.51034 1.20130 0.88502 0.86348 1.02747 1.23394 1.05245 0.97185 0.81679 1.70120 1.19885 1.04810 1.29036 1.22574 1.07867 0.96286 0.92975 1.22942 1.09167 0.90161 0.96958 1.45816 1.46573 1.10716 1.08102 1.21627 0.98083 1.00028 0.76404 0.88696 1.21961 0.94016 1.02203 1.01445 1.19107 0.92166 0.93848 0.94659 1.21399 1.24558 1.12961 0.98028 0.90903 1.25933 0.95422 0.95014 1.03095 1.70112 1.28163 1.20595 1.38293 0.85512 0.78315 0.78366 0.78956 1.18717 1.21416 1.19139 0.93761 0.92609 0.90105 0.93489 0.90821 0.83854 0.91000 0.89111 0.79331 0.80702 0.92772 0.90053 0.91552 0.98551 0.99898 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.17 71.98 0.73 -2.47 16 2 C 0.06 1.31 6.41 86.30 0.55 1.86 16 3 N -0.70 -20.77 6.49 -517.93 -3.36 -24.13 16 4 C 0.15 4.45 5.82 85.56 0.50 4.95 16 5 C 0.19 6.71 7.41 138.13 1.02 7.74 16 6 N -0.52 -19.07 11.25 -188.13 -2.12 -21.19 16 7 C -0.05 -1.67 11.87 83.52 0.99 -0.68 16 8 C -0.06 -2.06 10.70 83.09 0.89 -1.17 16 9 N -0.43 -16.35 2.61 -491.90 -1.28 -17.63 16 10 C 0.14 5.55 2.94 44.99 0.13 5.68 16 11 H 0.10 3.69 6.68 -2.38 -0.02 3.67 16 12 C -0.14 -4.68 9.07 71.98 0.65 -4.03 16 13 C 0.04 2.03 4.45 29.85 0.13 2.16 16 14 C -0.53 -28.24 8.41 25.60 0.22 -28.02 16 15 H 0.07 3.58 7.05 -2.92 -0.02 3.56 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 18 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.34 10.29 8.72 -89.70 -0.78 9.51 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 2.49 7.09 -2.38 -0.02 2.47 16 30 H 0.19 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.18 5.82 8.06 -2.91 -0.02 5.79 16 32 H 0.05 1.83 7.96 -2.39 -0.02 1.81 16 33 H 0.08 2.80 6.95 -2.38 -0.02 2.78 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 36 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -64.63 309.28 2.09 -62.54 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.26 Total: 24.58 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 6.28 Total: -13.30 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -6.48 Total: -118.39 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.63 2.09 -62.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.929 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds