Wall clock time and date at job start Mon Mar 30 2020 04:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47364 * 2 1 4 4 C 1.52999 * 109.47391 * 240.00094 * 2 1 3 5 5 N 1.46490 * 109.47579 * 175.00000 * 4 2 1 6 6 C 1.36885 * 126.39842 * 269.71233 * 5 4 2 7 7 C 1.34671 * 106.81628 * 179.84059 * 6 5 4 8 8 N 1.34126 * 108.02101 * 0.42583 * 7 6 5 9 9 C 1.30499 * 109.25761 * 359.72987 * 8 7 6 10 10 N 1.46899 * 109.47256 * 120.00174 * 2 1 3 11 11 C 1.46898 * 111.00025 * 271.42398 * 10 2 1 12 12 H 1.08998 * 109.47577 * 329.63110 * 11 10 2 13 13 C 1.52998 * 109.47202 * 89.63171 * 11 10 2 14 14 C 1.53006 * 109.47423 * 209.63049 * 11 10 2 15 15 C 1.50699 * 109.46752 * 65.00035 * 14 11 10 16 16 H 1.08000 * 120.00247 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99674 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99862 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46959 * 90.00380 * 19 17 15 21 21 H 1.48502 * 109.47187 * 209.99964 * 19 17 15 22 22 H 1.48505 * 109.47323 * 330.00056 * 19 17 15 23 23 H 1.08995 * 109.46955 * 306.65740 * 1 2 3 24 24 H 1.08995 * 109.46569 * 66.65496 * 1 2 3 25 25 H 1.09000 * 109.46905 * 186.66052 * 1 2 3 26 26 H 1.09002 * 109.46863 * 295.00072 * 4 2 1 27 27 H 1.09009 * 109.47121 * 54.99748 * 4 2 1 28 28 H 1.07998 * 126.59168 * 359.97438 * 6 5 4 29 29 H 1.08003 * 125.98699 * 180.12189 * 7 6 5 30 30 H 1.08000 * 125.64761 * 180.02562 * 9 8 7 31 31 H 1.00899 * 111.00004 * 35.37867 * 10 2 1 32 32 H 1.09005 * 109.47532 * 173.34290 * 13 11 10 33 33 H 1.09002 * 109.47144 * 293.34027 * 13 11 10 34 34 H 1.09000 * 109.47564 * 53.34197 * 13 11 10 35 35 H 1.08993 * 109.46920 * 185.00303 * 14 11 10 36 36 H 1.08997 * 109.46775 * 305.00160 * 14 11 10 37 37 H 0.97001 * 120.00048 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5000 -0.6179 -1.3110 6 6 4.2190 0.3711 -1.9264 7 6 5.5206 0.0808 -1.7388 8 7 5.5944 -1.0593 -1.0362 9 6 4.3880 -1.4836 -0.7764 10 7 2.0197 -0.6925 1.1994 11 6 2.1631 0.2409 2.3246 12 1 2.4048 1.2336 1.9448 13 6 0.8504 0.3005 3.1082 14 6 3.2858 -0.2398 3.2463 15 6 4.5995 -0.1816 2.5101 16 1 4.6305 0.1633 1.4871 17 6 5.7617 -0.5697 3.1424 18 7 5.7237 -0.9911 4.3876 19 14 7.3900 -0.4983 2.2297 20 1 8.0155 0.8325 2.4367 21 1 8.2945 -1.5562 2.7475 22 1 7.1546 -0.7145 0.7795 23 1 -0.3633 0.6135 0.8244 24 1 -0.3632 0.4072 -0.9435 25 1 -0.3633 -1.0207 0.1192 26 1 1.7517 -1.7715 -1.2056 27 1 1.6054 -0.2617 -2.1370 28 1 3.8193 1.2218 -2.4582 29 1 6.3582 0.6615 -2.0960 30 1 4.1407 -2.3786 -0.2248 31 1 1.4161 -1.4633 1.4436 32 1 0.9912 0.8992 4.0082 33 1 0.0771 0.7536 2.4878 34 1 0.5474 -0.7087 3.3870 35 1 3.3334 0.4019 4.1260 36 1 3.0877 -1.2660 3.5554 37 1 6.5414 -1.2638 4.8325 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829189386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:37 Heat of formation + Delta-G solvation = 39.111822 kcal Electronic energy + Delta-G solvation = -17740.706869 eV Core-core repulsion = 15132.211767 eV Total energy + Delta-G solvation = -2608.495102 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.58108 -38.96796 -35.82370 -34.35366 -32.70821 -30.04405 -29.40211 -28.99825 -27.06731 -24.92725 -22.36432 -21.99037 -21.53555 -21.17507 -18.38370 -18.04840 -16.62213 -16.51467 -15.91592 -15.55566 -14.91199 -14.62684 -14.56627 -14.34537 -14.14364 -13.81780 -13.58515 -13.42223 -13.17572 -13.00317 -12.74216 -12.70407 -12.25611 -12.14892 -11.92689 -11.80882 -11.03445 -10.98906 -10.53197 -10.38878 -10.14414 -9.08264 -8.94233 -8.02861 -6.04245 1.43375 1.46998 1.50145 1.83382 2.29494 2.58064 2.63932 3.29624 3.42008 3.94777 4.10774 4.19438 4.25075 4.27922 4.42085 4.45870 4.47618 4.59043 4.72202 4.79770 4.91330 4.97541 5.04421 5.13189 5.21160 5.31624 5.42701 5.56922 5.67139 5.75541 5.97426 6.14689 6.38967 6.53994 6.64238 6.82953 7.11115 7.53992 7.63812 9.08218 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.012478 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.236670 B = 2243.400363 C = 3582.821004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.060 0.940 4 C 0.116 3.884 5 N -0.439 5.439 6 C -0.057 4.057 7 C -0.070 4.070 8 N -0.541 5.541 9 C 0.215 3.785 10 N -0.672 5.672 11 C 0.110 3.890 12 H 0.046 0.954 13 C -0.170 4.170 14 C 0.037 3.963 15 C -0.466 4.466 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.947 5.947 19 Si 0.911 3.089 20 H -0.300 1.300 21 H -0.307 1.307 22 H -0.208 1.208 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.199 0.801 29 H 0.163 0.837 30 H 0.191 0.809 31 H 0.341 0.659 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.056 0.944 35 H -0.019 1.019 36 H -0.010 1.010 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 2.188 -13.814 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.040 4.040 3 H 0.078 0.922 4 C -0.006 4.006 5 N -0.120 5.120 6 C -0.191 4.191 7 C -0.218 4.218 8 N -0.260 5.260 9 C -0.068 4.068 10 N -0.303 5.303 11 C 0.000 4.000 12 H 0.064 0.936 13 C -0.229 4.229 14 C 0.000 4.000 15 C -0.504 4.504 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.738 3.262 20 H -0.227 1.227 21 H -0.234 1.234 22 H -0.130 1.130 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.216 0.784 29 H 0.180 0.820 30 H 0.208 0.792 31 H 0.160 0.840 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.075 0.925 35 H -0.001 1.001 36 H 0.009 0.991 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.715 1.763 -13.675 18.756 hybrid contribution -0.099 0.548 0.583 0.807 sum -12.815 2.311 -13.092 18.465 Atomic orbital electron populations 1.22489 0.93929 1.03175 1.03398 1.21993 0.94429 0.97116 0.90472 0.92154 1.22192 0.75503 1.03881 0.99031 1.45435 1.08158 1.18955 1.39425 1.22921 0.92246 0.97471 1.06467 1.22431 0.96807 0.97421 1.05105 1.70256 1.24107 1.14014 1.17605 1.24628 0.83738 0.98107 1.00373 1.60338 1.54742 1.11055 1.04133 1.21345 0.93750 0.94065 0.90795 0.93575 1.22552 0.97860 1.01852 1.00618 1.19022 0.93609 0.94209 0.93163 1.21340 0.91802 1.39028 0.98251 0.92300 1.25600 1.02076 0.96256 0.95289 1.70094 1.27864 1.48091 1.12981 0.86234 0.80302 0.75564 0.84121 1.22732 1.23418 1.12988 0.92302 0.90121 0.91102 0.87906 0.86262 0.78434 0.81963 0.79178 0.84020 0.93634 0.90830 0.92508 1.00095 0.99139 0.94058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 8.94 71.98 0.64 -1.89 16 2 C 0.07 1.57 2.84 44.92 0.13 1.70 16 3 H 0.06 1.60 7.31 -2.39 -0.02 1.58 16 4 C 0.12 2.24 5.78 86.38 0.50 2.74 16 5 N -0.44 -12.63 2.70 -529.07 -1.43 -14.06 16 6 C -0.06 -1.64 11.58 83.09 0.96 -0.68 16 7 C -0.07 -2.51 11.87 83.52 0.99 -1.52 16 8 N -0.54 -22.85 9.87 -200.31 -1.98 -24.83 16 9 C 0.22 7.95 11.89 180.26 2.14 10.09 16 10 N -0.67 -20.55 5.44 -469.47 -2.55 -23.10 16 11 C 0.11 4.10 2.56 44.92 0.11 4.22 16 12 H 0.05 1.84 7.30 -2.39 -0.02 1.82 16 13 C -0.17 -5.03 8.94 71.98 0.64 -4.39 16 14 C 0.04 1.93 4.65 29.85 0.14 2.07 16 15 C -0.47 -26.51 8.84 25.60 0.23 -26.28 16 16 H 0.06 3.35 7.34 -2.91 -0.02 3.33 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.95 -60.99 13.29 21.45 0.28 -60.70 16 19 Si 0.91 48.68 29.54 68.60 2.03 50.71 16 20 H -0.30 -16.10 7.11 99.48 0.71 -15.40 16 21 H -0.31 -16.72 7.11 99.48 0.71 -16.01 16 22 H -0.21 -10.80 5.68 99.48 0.56 -10.24 16 23 H 0.06 0.97 5.69 -2.39 -0.01 0.96 16 24 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.92 7.99 -2.39 -0.02 0.90 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.16 5.21 8.06 -2.91 -0.02 5.18 16 30 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 31 H 0.34 9.33 7.90 -89.69 -0.71 8.62 16 32 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.71 5.68 -2.39 -0.01 1.70 16 34 H 0.06 1.61 7.99 -2.39 -0.02 1.59 16 35 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.26 302.62 3.50 -71.76 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.19 Total: 13.53 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 6.95 Total: -13.31 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.67 Total: -122.69 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -75.26 3.50 -71.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829189386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.873 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds