Wall clock time and date at job start Mon Mar 30 2020 03:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30500 * 125.64850 * 2 1 4 4 C 1.34129 * 109.25220 * 179.73710 * 3 2 1 5 5 C 1.50701 * 125.99078 * 180.25558 * 4 3 2 6 6 C 1.34672 * 108.02228 * 0.40005 * 4 3 2 7 7 C 1.50701 * 126.59225 * 179.87848 * 6 4 3 8 8 N 1.46897 * 109.47242 * 79.70955 * 7 6 4 9 9 C 1.46896 * 111.00390 * 66.04812 * 8 7 6 10 10 C 1.46906 * 111.00012 * 190.00433 * 8 7 6 11 11 H 1.08998 * 109.46389 * 299.99580 * 10 8 7 12 12 C 1.52997 * 109.47302 * 59.99745 * 10 8 7 13 13 C 1.50697 * 109.47180 * 180.02562 * 10 8 7 14 14 H 1.07998 * 120.00039 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99815 * 179.97438 * 13 10 8 16 16 N 1.31508 * 119.99915 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99777 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47155 * 89.99872 * 17 15 13 19 19 H 1.48495 * 109.46964 * 209.99990 * 17 15 13 20 20 H 1.48499 * 109.46909 * 330.00049 * 17 15 13 21 21 N 1.35044 * 125.64977 * 179.97438 * 2 1 3 22 22 H 0.96998 * 126.39748 * 0.02562 * 21 2 1 23 23 H 1.09003 * 109.47210 * 270.02200 * 1 2 3 24 24 H 1.09002 * 109.47225 * 30.01977 * 1 2 3 25 25 H 1.09005 * 109.47399 * 150.01781 * 1 2 3 26 26 H 1.09002 * 109.46786 * 270.17334 * 5 4 3 27 27 H 1.09005 * 109.47308 * 30.16920 * 5 4 3 28 28 H 1.08990 * 109.47621 * 150.17468 * 5 4 3 29 29 H 1.09009 * 109.46789 * 319.71236 * 7 6 4 30 30 H 1.09000 * 109.47165 * 199.71331 * 7 6 4 31 31 H 1.08994 * 109.47833 * 183.95153 * 9 8 7 32 32 H 1.09009 * 109.46755 * 303.95702 * 9 8 7 33 33 H 1.09001 * 109.47104 * 63.94533 * 9 8 7 34 34 H 1.09002 * 109.47153 * 180.02562 * 12 10 8 35 35 H 1.09001 * 109.46832 * 60.00356 * 12 10 8 36 36 H 1.09004 * 109.47261 * 300.00337 * 12 10 8 37 37 H 0.97001 * 119.99839 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6818 0.0058 5 6 4.7480 1.6016 0.0132 6 6 3.5925 -0.6643 0.0006 7 6 4.8275 -1.5280 0.0016 8 7 5.3657 -1.6112 1.3659 9 6 4.4394 -2.3253 2.2547 10 6 6.6921 -2.2427 1.3709 11 1 6.6161 -3.2506 0.9631 12 6 7.6535 -1.4168 0.5139 13 6 7.2106 -2.3111 2.7843 14 1 6.6146 -1.9238 3.5974 15 6 8.4458 -2.8681 3.0393 16 7 9.1713 -3.3401 2.0492 17 14 9.0887 -2.9521 4.7912 18 1 8.6601 -4.2297 5.4150 19 1 10.5719 -2.8808 4.7780 20 1 8.5453 -1.8126 5.5731 21 7 2.2941 -1.0974 0.0005 22 1 1.9951 -2.0201 0.0006 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5136 26 1 5.0390 1.8274 -1.0127 27 1 4.4910 2.5264 0.5299 28 1 5.5774 1.1164 0.5277 29 1 5.5769 -1.0911 -0.6586 30 1 4.5721 -2.5276 -0.3499 31 1 4.8291 -2.3116 3.2725 32 1 3.4651 -1.8369 2.2320 33 1 4.3363 -3.3571 1.9188 34 1 8.6375 -1.8856 0.5173 35 1 7.7294 -0.4089 0.9218 36 1 7.2783 -1.3678 -0.5084 37 1 10.0401 -3.7323 2.2286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929833681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:55 Heat of formation + Delta-G solvation = 34.184725 kcal Electronic energy + Delta-G solvation = -17252.187487 eV Core-core repulsion = 14643.478731 eV Total energy + Delta-G solvation = -2608.708757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.06044 -38.74847 -34.99295 -34.16658 -33.09366 -31.06091 -30.12332 -29.16005 -27.03226 -25.74822 -24.22730 -21.85533 -21.53614 -20.40007 -18.51773 -17.90411 -17.19411 -16.46603 -15.95783 -15.49334 -15.33986 -14.77330 -14.32811 -14.03489 -13.93271 -13.73621 -13.44151 -13.22161 -13.15486 -12.97985 -12.84591 -12.77922 -12.61417 -12.47733 -12.06836 -11.98251 -11.77262 -11.00614 -10.83235 -10.72550 -10.51217 -9.06743 -8.89652 -8.10379 -6.21807 1.07187 1.42007 1.44275 1.54296 2.11604 2.22111 2.43639 3.18027 3.45324 3.57197 3.99652 4.09179 4.34911 4.42729 4.47023 4.60545 4.65554 4.70702 4.78280 4.91151 4.93687 5.00602 5.05915 5.08443 5.19689 5.22520 5.29882 5.34158 5.51507 5.72741 5.79693 5.88955 6.27072 6.35958 6.58872 6.69707 6.91653 7.19200 7.47215 8.95103 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.040003 B = 0.005857 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.771787 B = 4779.120794 C = 4977.851220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.206 3.794 3 N -0.528 5.528 4 C -0.001 4.001 5 C -0.063 4.063 6 C -0.016 4.016 7 C 0.131 3.869 8 N -0.534 5.534 9 C 0.048 3.952 10 C 0.218 3.782 11 H -0.033 1.033 12 C -0.122 4.122 13 C -0.518 4.518 14 H 0.057 0.943 15 C 0.015 3.985 16 N -0.918 5.918 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 N -0.558 5.558 22 H 0.427 0.573 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.011 0.989 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 3.056 -4.747 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 N -0.250 5.250 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.131 4.131 7 C 0.002 3.998 8 N -0.259 5.259 9 C -0.100 4.100 10 C 0.112 3.888 11 H -0.016 1.016 12 C -0.180 4.180 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.164 5.164 22 H 0.267 0.733 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.141 4.286 -4.605 15.477 hybrid contribution 0.798 -2.324 0.579 2.525 sum -13.343 1.961 -4.026 14.074 Atomic orbital electron populations 1.20336 0.81708 1.05323 1.04625 1.23974 0.96991 0.81129 1.03754 1.70100 1.02097 1.30248 1.22543 1.20703 0.93235 0.91917 1.07072 1.20006 0.92789 0.97174 1.02141 1.20824 0.85463 0.95061 1.11771 1.20400 0.91570 0.95708 0.92088 1.62045 1.03273 1.53459 1.07122 1.22087 0.95245 0.94572 0.98136 1.19062 0.84536 0.89800 0.95414 1.01585 1.21683 1.01265 0.98964 0.96119 1.21388 1.02612 1.38530 0.93131 0.92532 1.25641 0.96947 0.95097 1.00735 1.70003 1.12466 1.40962 1.32357 0.85575 0.77360 0.78375 0.80424 1.20286 1.20862 1.19586 1.43064 1.05574 1.10496 1.57265 0.73300 0.89096 0.88865 0.88290 0.90892 0.91680 0.91392 0.88786 0.95044 0.92272 0.92432 0.97055 0.92103 0.94700 0.94784 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.51 71.24 0.75 -0.17 16 2 C 0.21 5.35 8.15 138.13 1.13 6.47 16 3 N -0.53 -17.60 11.25 -176.28 -1.98 -19.58 16 4 C 0.00 -0.02 7.09 41.39 0.29 0.27 16 5 C -0.06 -2.03 10.22 71.24 0.73 -1.30 16 6 C -0.02 -0.52 5.62 40.95 0.23 -0.29 16 7 C 0.13 4.66 4.86 85.56 0.42 5.08 16 8 N -0.53 -22.51 4.61 -906.04 -4.18 -26.69 16 9 C 0.05 1.88 9.07 127.69 1.16 3.03 16 10 C 0.22 10.87 2.06 44.17 0.09 10.96 16 11 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 12 C -0.12 -5.82 8.77 71.98 0.63 -5.19 16 13 C -0.52 -28.15 7.93 25.60 0.20 -27.95 16 14 H 0.06 3.09 6.39 -2.91 -0.02 3.07 16 15 C 0.01 0.80 5.30 84.66 0.45 1.25 16 16 N -0.92 -52.01 11.32 21.45 0.24 -51.76 16 17 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 N -0.56 -14.38 5.89 -174.60 -1.03 -15.41 16 22 H 0.43 8.25 8.96 -92.71 -0.83 7.42 16 23 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.07 2.38 7.89 -2.39 -0.02 2.36 16 29 H 0.09 3.38 5.83 -2.38 -0.01 3.36 16 30 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 31 H 0.06 2.51 6.23 -2.39 -0.01 2.49 16 32 H 0.06 1.99 6.96 -2.38 -0.02 1.98 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 35 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.03 1.40 6.20 -2.38 -0.01 1.39 16 37 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -64.87 299.63 1.38 -63.49 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.23 Total: 12.37 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 6.07 Total: -7.83 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -6.95 Total: -113.45 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.87 1.38 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929833681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.674 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds