Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86804 * 120.00397 * 2 1 4 4 H 1.48495 * 109.47021 * 270.00042 * 3 2 1 5 5 H 1.48507 * 109.46669 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47109 * 149.99618 * 3 2 1 7 7 C 1.40080 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.40039 * 119.99457 * 0.02562 * 7 2 1 10 10 C 1.38590 * 126.25990 * 359.97438 * 9 7 2 11 11 N 1.30672 * 113.55393 * 179.97438 * 10 9 7 12 12 C 1.29526 * 117.63148 * 0.02562 * 11 10 9 13 13 C 1.50697 * 124.56282 * 180.26401 * 12 11 10 14 14 C 1.52997 * 109.47271 * 89.70087 * 13 12 11 15 15 H 1.08992 * 110.62959 * 56.65225 * 14 13 12 16 16 C 1.55138 * 110.70676 * 179.97438 * 14 13 12 17 17 C 1.54909 * 101.65240 * 154.03291 * 16 14 13 18 18 N 1.47837 * 104.79756 * 322.92880 * 17 16 14 19 19 C 1.47444 * 108.56819 * 24.09437 * 18 17 16 20 20 S 1.70888 * 110.87578 * 359.97438 * 12 11 10 21 21 H 0.97005 * 120.00149 * 0.02562 * 1 2 3 22 22 H 1.07999 * 123.21983 * 359.97438 * 10 9 7 23 23 H 1.08994 * 109.47375 * 209.70176 * 13 12 11 24 24 H 1.09006 * 109.47241 * 329.70052 * 13 12 11 25 25 H 1.08994 * 110.99251 * 272.12592 * 16 14 13 26 26 H 1.09000 * 110.99239 * 35.94373 * 16 14 13 27 27 H 1.09005 * 110.37269 * 204.10178 * 17 16 14 28 28 H 1.09006 * 110.46549 * 81.80860 * 17 16 14 29 29 H 1.00903 * 111.00308 * 261.82376 * 18 17 16 30 30 H 1.08994 * 109.89074 * 239.60394 * 19 18 17 31 31 H 1.09004 * 109.88690 * 118.41457 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0463 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5401 1.4401 0.7001 7 6 2.0090 -1.2131 -0.0005 8 1 3.0889 -1.2132 -0.0001 9 6 1.3087 -2.4258 -0.0016 10 6 -0.0690 -2.5768 -0.0018 11 7 -0.4575 -3.8244 -0.0034 12 6 0.4595 -4.7392 -0.0042 13 6 0.1883 -6.2216 -0.0118 14 6 0.0943 -6.7155 -1.4568 15 1 1.0038 -6.4717 -2.0058 16 6 -0.1842 -8.2411 -1.4980 17 6 -0.8909 -8.3932 -2.8681 18 7 -1.7242 -7.1792 -3.0000 19 6 -1.1431 -6.1171 -2.1585 20 16 2.0182 -4.0389 -0.0035 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7556 -1.7432 -0.0006 23 1 0.9990 -6.7419 0.4980 24 1 -0.7518 -6.4216 0.5024 25 1 0.7460 -8.8086 -1.4733 26 1 -0.8438 -8.5398 -0.6833 27 1 -1.5167 -9.2857 -2.8753 28 1 -0.1567 -8.4388 -3.6726 29 1 -2.6802 -7.3665 -2.7370 30 1 -1.8709 -5.7935 -1.4146 31 1 -0.8447 -5.2730 -2.7803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = 14.174774 kcal Electronic energy + Delta-G solvation = -14439.694242 eV Core-core repulsion = 12039.318903 eV Total energy + Delta-G solvation = -2400.375339 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.53292 -37.29184 -34.25243 -32.15851 -29.41246 -28.77279 -26.51339 -24.04678 -22.15699 -21.20430 -19.66969 -19.10037 -16.83963 -16.41184 -16.01847 -15.36048 -14.83822 -13.71596 -13.42485 -13.08150 -12.87973 -12.72541 -12.17538 -11.93827 -11.65219 -11.52621 -11.33947 -11.28134 -11.07042 -10.70707 -10.43441 -10.28533 -10.19369 -9.72178 -9.58758 -8.22726 -7.96955 -7.91366 -7.18521 -6.97914 -4.57843 2.41163 2.88906 2.94121 3.02038 3.22109 3.62760 3.73921 4.37514 4.52280 4.92298 5.03285 5.09377 5.28928 5.58966 5.66765 5.77786 5.94866 6.05000 6.12332 6.19099 6.35655 6.40567 6.66856 6.71327 6.77583 7.11454 7.15842 7.43812 7.60683 7.78790 8.14068 8.35754 8.65931 9.81609 9.83175 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.050103 B = 0.005749 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.714177 B = 4869.553842 C = 5115.415538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.064 3.936 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.376 4.376 8 H 0.086 0.914 9 C 0.016 3.984 10 C -0.142 4.142 11 N -0.421 5.421 12 C -0.128 4.128 13 C 0.004 3.996 14 C -0.097 4.097 15 H 0.076 0.924 16 C -0.152 4.152 17 C 0.048 3.952 18 N -0.691 5.691 19 C 0.061 3.939 20 S -0.065 6.065 21 H 0.289 0.711 22 H 0.195 0.805 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.333 0.667 30 H 0.062 0.938 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 -7.121 -1.690 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.158 4.158 3 Si 0.757 3.243 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.413 4.413 8 H 0.104 0.896 9 C -0.106 4.106 10 C -0.296 4.296 11 N -0.133 5.133 12 C -0.396 4.396 13 C -0.037 4.037 14 C -0.117 4.117 15 H 0.094 0.906 16 C -0.191 4.191 17 C -0.081 4.081 18 N -0.319 5.319 19 C -0.068 4.068 20 S 0.184 5.816 21 H 0.101 0.899 22 H 0.211 0.789 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.731 -7.451 -2.305 7.834 hybrid contribution -0.372 1.170 0.912 1.530 sum 0.359 -6.281 -1.393 6.444 Atomic orbital electron populations 1.69473 1.07827 1.29756 1.32006 1.26120 0.95100 1.01816 0.92813 0.85857 0.80039 0.78704 0.79655 1.18904 1.19629 1.18190 1.19038 0.94961 0.88806 1.38518 0.89553 1.23302 0.95699 0.93031 0.98526 1.23100 0.93509 0.91987 1.21005 1.65397 1.36834 1.01642 1.09393 1.24924 0.89957 0.97677 1.27053 1.19570 1.00683 0.89055 0.94400 1.22393 0.99147 0.93047 0.97154 0.90581 1.23215 1.00922 0.96971 0.97979 1.22830 0.96658 0.92268 0.96379 1.61768 1.05478 1.07474 1.57183 1.22573 0.95657 0.93971 0.94571 1.82972 1.15325 1.03937 1.79347 0.89928 0.78895 0.92283 0.91688 0.91101 0.91555 0.92105 0.90925 0.85246 0.91944 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.77 10.18 55.56 0.57 -18.20 16 2 C 0.06 1.52 5.50 -17.28 -0.09 1.42 16 3 Si 0.93 17.40 29.56 -169.99 -5.03 12.37 16 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.38 -9.59 9.42 -38.22 -0.36 -9.95 16 8 H 0.09 2.07 7.85 -52.49 -0.41 1.66 16 9 C 0.02 0.43 6.30 -38.78 -0.24 0.18 16 10 C -0.14 -3.93 10.55 -17.92 -0.19 -4.12 16 11 N -0.42 -11.02 10.45 -10.84 -0.11 -11.13 16 12 C -0.13 -3.00 6.17 -13.25 -0.08 -3.08 16 13 C 0.00 0.08 5.18 -27.89 -0.14 -0.06 16 14 C -0.10 -1.63 2.97 -88.80 -0.26 -1.89 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 16 C -0.15 -2.00 6.52 -24.59 -0.16 -2.16 16 17 C 0.05 0.61 7.57 -2.30 -0.02 0.59 16 18 N -0.69 -10.30 7.39 -110.79 -0.82 -11.11 16 19 C 0.06 1.08 6.69 -2.83 -0.02 1.06 16 20 S -0.07 -1.55 23.13 -107.50 -2.49 -4.04 16 21 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 22 H 0.20 5.51 5.36 -52.49 -0.28 5.23 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.33 4.35 8.91 -39.29 -0.35 4.00 16 30 H 0.06 1.18 7.77 -51.93 -0.40 0.77 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -27.48 272.04 -9.31 -36.78 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -3.95 Total: 9.25 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -1.57 Total: -18.02 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.37 Total: -40.44 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.49 Total: -4.04 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.48 -9.31 -36.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.958 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds