Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86804 * 120.00397 * 2 1 4 4 H 1.48495 * 109.47021 * 270.00042 * 3 2 1 5 5 H 1.48507 * 109.46669 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47109 * 149.99618 * 3 2 1 7 7 C 1.40080 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.40039 * 119.99457 * 0.02562 * 7 2 1 10 10 C 1.38590 * 126.25990 * 359.97438 * 9 7 2 11 11 N 1.30672 * 113.55393 * 179.97438 * 10 9 7 12 12 C 1.29526 * 117.63148 * 0.02562 * 11 10 9 13 13 C 1.50697 * 124.56282 * 180.26401 * 12 11 10 14 14 C 1.52997 * 109.47271 * 89.70087 * 13 12 11 15 15 H 1.08992 * 110.62959 * 56.65225 * 14 13 12 16 16 C 1.55138 * 110.70676 * 179.97438 * 14 13 12 17 17 C 1.54909 * 101.65240 * 154.03291 * 16 14 13 18 18 N 1.47837 * 104.79756 * 322.92880 * 17 16 14 19 19 C 1.47444 * 108.56819 * 24.09437 * 18 17 16 20 20 S 1.70888 * 110.87578 * 359.97438 * 12 11 10 21 21 H 0.97005 * 120.00149 * 0.02562 * 1 2 3 22 22 H 1.07999 * 123.21983 * 359.97438 * 10 9 7 23 23 H 1.08994 * 109.47375 * 209.70176 * 13 12 11 24 24 H 1.09006 * 109.47241 * 329.70052 * 13 12 11 25 25 H 1.08994 * 110.99251 * 272.12592 * 16 14 13 26 26 H 1.09000 * 110.99239 * 35.94373 * 16 14 13 27 27 H 1.09005 * 110.37269 * 204.10178 * 17 16 14 28 28 H 1.09006 * 110.46549 * 81.80860 * 17 16 14 29 29 H 1.00903 * 111.00308 * 261.82376 * 18 17 16 30 30 H 1.08994 * 109.89074 * 239.60394 * 19 18 17 31 31 H 1.09004 * 109.88690 * 118.41457 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0463 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5401 1.4401 0.7001 7 6 2.0090 -1.2131 -0.0005 8 1 3.0889 -1.2132 -0.0001 9 6 1.3087 -2.4258 -0.0016 10 6 -0.0690 -2.5768 -0.0018 11 7 -0.4575 -3.8244 -0.0034 12 6 0.4595 -4.7392 -0.0042 13 6 0.1883 -6.2216 -0.0118 14 6 0.0943 -6.7155 -1.4568 15 1 1.0038 -6.4717 -2.0058 16 6 -0.1842 -8.2411 -1.4980 17 6 -0.8909 -8.3932 -2.8681 18 7 -1.7242 -7.1792 -3.0000 19 6 -1.1431 -6.1171 -2.1585 20 16 2.0182 -4.0389 -0.0035 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7556 -1.7432 -0.0006 23 1 0.9990 -6.7419 0.4980 24 1 -0.7518 -6.4216 0.5024 25 1 0.7460 -8.8086 -1.4733 26 1 -0.8438 -8.5398 -0.6833 27 1 -1.5167 -9.2857 -2.8753 28 1 -0.1567 -8.4388 -3.6726 29 1 -2.6802 -7.3665 -2.7370 30 1 -1.8709 -5.7935 -1.4146 31 1 -0.8447 -5.2730 -2.7803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260957182.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -4.160679 kcal Electronic energy + Delta-G solvation = -14440.489326 eV Core-core repulsion = 12039.318903 eV Total energy + Delta-G solvation = -2401.170424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98236 -39.04978 -36.08935 -33.65739 -31.14148 -30.10185 -28.09749 -25.87193 -23.97377 -22.33761 -21.10733 -20.97243 -18.66033 -18.31105 -17.26060 -16.69821 -16.51988 -15.45708 -14.81734 -14.56956 -14.45587 -14.43365 -13.73896 -13.38511 -13.31823 -13.09636 -13.02352 -12.85936 -12.26260 -12.06241 -11.88242 -11.70138 -11.62445 -11.53045 -11.42549 -9.93013 -9.89164 -9.43929 -9.13285 -8.77897 -6.54134 0.56390 1.22491 1.40491 1.51025 1.56372 1.67884 2.13336 2.50897 3.08990 3.33724 3.69317 3.78841 4.09430 4.16058 4.41963 4.56439 4.68358 4.73318 4.78519 4.86742 4.92679 4.97756 5.11020 5.24079 5.26597 5.42070 5.53161 5.82163 5.89952 6.21841 6.43527 6.51036 6.60548 7.83184 8.06547 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.050103 B = 0.005749 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.714177 B = 4869.553842 C = 5115.415538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.023 3.977 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.251 1.251 7 C -0.403 4.403 8 H 0.096 0.904 9 C -0.017 4.017 10 C -0.184 4.184 11 N -0.443 5.443 12 C -0.116 4.116 13 C 0.005 3.995 14 C -0.095 4.095 15 H 0.062 0.938 16 C -0.139 4.139 17 C 0.048 3.952 18 N -0.698 5.698 19 C 0.069 3.931 20 S -0.045 6.045 21 H 0.300 0.700 22 H 0.178 0.822 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.345 0.655 30 H 0.045 0.955 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -8.177 -1.731 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.197 4.197 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.174 1.174 7 C -0.439 4.439 8 H 0.114 0.886 9 C -0.139 4.139 10 C -0.335 4.335 11 N -0.155 5.155 12 C -0.387 4.387 13 C -0.036 4.036 14 C -0.116 4.116 15 H 0.080 0.920 16 C -0.177 4.177 17 C -0.081 4.081 18 N -0.327 5.327 19 C -0.060 4.060 20 S 0.205 5.795 21 H 0.112 0.888 22 H 0.194 0.806 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.064 0.936 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.544 -8.515 -2.348 8.967 hybrid contribution -0.675 1.415 0.902 1.809 sum 0.868 -7.100 -1.446 7.297 Atomic orbital electron populations 1.69533 1.09520 1.31428 1.31432 1.27238 0.95849 1.05198 0.91372 0.84718 0.78675 0.73465 0.80007 1.18135 1.18467 1.17400 1.19458 0.95612 0.89487 1.39329 0.88635 1.23655 0.95995 0.94935 0.99265 1.22955 0.94022 0.92395 1.24150 1.65395 1.37759 1.01638 1.10723 1.25865 0.89582 0.99524 1.23735 1.19753 1.01728 0.85933 0.96205 1.22304 0.97956 0.96146 0.95188 0.91987 1.23170 1.02301 0.93599 0.98656 1.22939 0.96845 0.92202 0.96073 1.61649 1.06498 1.08009 1.56517 1.22311 0.95894 0.94041 0.93803 1.82710 1.15145 1.02329 1.79354 0.88826 0.80578 0.90159 0.91076 0.89006 0.90287 0.88957 0.90906 0.83912 0.93624 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.94 10.18 21.86 0.22 -39.72 16 2 C 0.02 1.11 5.50 85.29 0.47 1.58 16 3 Si 1.01 34.97 29.56 68.60 2.03 37.00 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 5 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 6 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 7 C -0.40 -20.91 9.42 23.15 0.22 -20.70 16 8 H 0.10 4.61 7.85 -2.91 -0.02 4.58 16 9 C -0.02 -0.95 6.30 22.79 0.14 -0.81 16 10 C -0.18 -10.63 10.55 84.95 0.90 -9.73 16 11 N -0.44 -23.99 10.45 -188.21 -1.97 -25.96 16 12 C -0.12 -5.51 6.17 88.45 0.55 -4.96 16 13 C 0.01 0.19 5.18 29.85 0.15 0.34 16 14 C -0.10 -3.09 2.97 -9.61 -0.03 -3.11 16 15 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.14 -3.18 6.52 31.98 0.21 -2.97 16 17 C 0.05 1.07 7.57 86.78 0.66 1.72 16 18 N -0.70 -19.79 7.39 -504.42 -3.73 -23.51 16 19 C 0.07 2.46 6.69 86.65 0.58 3.04 16 20 S -0.05 -2.16 23.13 -56.49 -1.31 -3.47 16 21 H 0.30 13.27 8.30 -92.70 -0.77 12.50 16 22 H 0.18 10.67 5.36 -2.91 -0.02 10.65 16 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.07 2.53 8.06 -2.38 -0.02 2.51 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 27 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 28 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.34 8.41 8.91 -89.69 -0.80 7.62 16 30 H 0.05 1.75 7.77 -2.39 -0.02 1.73 16 31 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -61.64 272.04 -0.57 -62.20 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.34 Total: 29.05 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 3.84 Total: -35.60 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -5.47 Total: -89.19 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 16 Polarization: -2.16 SS G_CDS: -1.31 Total: -3.47 kcal Total: -61.64 -0.57 -62.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957182.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.044 kcal (2) G-P(sol) polarization free energy of solvation -61.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds