Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46905 * 110.99638 * 2 1 4 4 C 1.39667 * 110.99960 * 123.94848 * 2 1 3 5 5 C 1.38895 * 120.06300 * 300.02222 * 4 2 1 6 6 C 1.38305 * 119.90314 * 179.97438 * 5 4 2 7 7 F 1.35097 * 119.98689 * 180.02562 * 6 5 4 8 8 C 1.38544 * 120.01969 * 0.02800 * 6 5 4 9 9 C 1.38223 * 120.12563 * 359.70004 * 8 6 5 10 10 C 1.38140 * 120.09700 * 0.54977 * 9 8 6 11 11 C 1.50701 * 120.01106 * 179.74580 * 10 9 8 12 12 H 1.09002 * 109.47060 * 144.72671 * 11 10 9 13 13 N 1.46901 * 109.46921 * 24.72490 * 11 10 9 14 14 C 1.50699 * 109.47269 * 264.72524 * 11 10 9 15 15 H 1.08000 * 119.99792 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47438 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47045 * 120.00577 * 18 16 14 21 21 H 1.48501 * 109.46950 * 240.00369 * 18 16 14 22 22 H 1.08998 * 109.46931 * 300.00227 * 1 2 3 23 23 H 1.08996 * 109.46607 * 60.00320 * 1 2 3 24 24 H 1.08997 * 109.46726 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47001 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46710 * 299.99745 * 3 2 1 27 27 H 1.08998 * 109.47105 * 59.99449 * 3 2 1 28 28 H 1.08000 * 120.04909 * 359.96661 * 5 4 2 29 29 H 1.08000 * 119.93192 * 179.97438 * 8 6 5 30 30 H 1.08004 * 119.95118 * 180.27806 * 9 8 6 31 31 H 1.00898 * 111.00245 * 299.99784 * 13 11 10 32 32 H 1.00904 * 111.00313 * 63.95601 * 13 11 10 33 33 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9696 -0.7282 1.0816 5 6 1.6574 -0.3479 2.3805 6 6 2.1544 -1.0716 3.4492 7 9 1.8514 -0.7036 4.7132 8 6 2.9629 -2.1739 3.2237 9 6 3.2696 -2.5566 1.9314 10 6 2.7801 -1.8343 0.8604 11 6 3.1204 -2.2498 -0.5476 12 1 2.2684 -2.0566 -1.1994 13 7 3.4400 -3.6835 -0.5713 14 6 4.3109 -1.4618 -1.0302 15 1 4.7749 -0.7332 -0.3819 16 6 4.8082 -1.6717 -2.2989 17 7 4.2435 -2.5593 -3.0881 18 14 6.2843 -0.6953 -2.8967 19 1 6.7314 0.2316 -1.8261 20 1 7.3891 -1.6272 -3.2373 21 1 5.9061 0.0855 -4.1019 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.0851 1.3425 0.0005 26 1 1.6459 1.8948 -0.8900 27 1 1.6458 1.8949 0.8899 28 1 1.0276 0.5118 2.5558 29 1 3.3505 -2.7378 4.0592 30 1 3.8964 -3.4190 1.7588 31 1 4.2272 -3.8884 0.0257 32 1 2.6369 -4.2373 -0.3136 33 1 4.5932 -2.7067 -3.9808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270278.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = -20.142086 kcal Electronic energy + Delta-G solvation = -17240.150909 eV Core-core repulsion = 14407.907398 eV Total energy + Delta-G solvation = -2832.243511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.86733 -40.91543 -37.51413 -36.09416 -33.52128 -31.06364 -30.41665 -28.46436 -27.83505 -25.55391 -24.60690 -22.18463 -21.64001 -18.60065 -18.38641 -17.54862 -16.85896 -16.60612 -16.21509 -16.11515 -15.78605 -15.74876 -15.27989 -14.66916 -14.45759 -14.00796 -13.46449 -13.32769 -13.13045 -13.02889 -12.79751 -12.69987 -12.56616 -12.42261 -11.94816 -11.66132 -11.13930 -10.44964 -9.87943 -9.36421 -9.28582 -8.78513 -7.86853 -6.03853 0.23144 0.29263 1.44258 1.47530 1.56200 2.49863 2.68651 2.96867 3.34516 3.37479 3.82860 4.02787 4.21582 4.31093 4.37667 4.40012 4.56476 4.64502 4.65861 4.76359 4.95860 5.01982 5.07882 5.15370 5.36724 5.43248 5.76829 5.86102 5.91543 6.09128 6.32651 6.52475 6.80485 7.22629 7.36721 7.65221 9.16814 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.008579 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.735288 B = 3263.012708 C = 3627.431324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.517 5.517 3 C 0.040 3.960 4 C 0.109 3.891 5 C -0.184 4.184 6 C 0.074 3.926 7 F -0.147 7.147 8 C -0.147 4.147 9 C -0.102 4.102 10 C -0.086 4.086 11 C 0.274 3.726 12 H 0.027 0.973 13 N -0.825 5.825 14 C -0.512 4.512 15 H 0.036 0.964 16 C 0.037 3.963 17 N -0.881 5.881 18 Si 0.938 3.062 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.139 0.861 31 H 0.322 0.678 32 H 0.311 0.689 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 3.885 10.193 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.237 5.237 3 C -0.107 4.107 4 C 0.014 3.986 5 C -0.205 4.205 6 C 0.054 3.946 7 F -0.126 7.126 8 C -0.166 4.166 9 C -0.120 4.120 10 C -0.089 4.089 11 C 0.164 3.836 12 H 0.045 0.955 13 N -0.353 5.353 14 C -0.551 4.551 15 H 0.055 0.945 16 C -0.165 4.165 17 N -0.518 5.518 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.157 0.843 29 H 0.173 0.827 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.433 3.708 8.801 10.988 hybrid contribution 0.297 0.946 1.348 1.673 sum -5.136 4.653 10.149 12.290 Atomic orbital electron populations 1.22454 0.85073 1.02170 1.01744 1.59407 1.08925 1.14746 1.40665 1.22338 1.00231 0.86730 1.01380 1.18523 0.97011 0.94936 0.88106 1.21656 1.04303 1.02215 0.92318 1.17529 1.01196 0.97366 0.78486 1.91447 1.92060 1.91406 1.37664 1.21275 0.99782 0.97043 0.98496 1.20959 0.99551 1.00565 0.90964 1.21657 0.93791 0.93915 0.99546 1.17650 0.95332 0.85010 0.85627 0.95472 1.59023 1.08243 1.06997 1.61017 1.20876 1.14457 1.21027 0.98717 0.94526 1.25525 0.98575 0.95431 0.96998 1.70226 1.40739 1.33338 1.07452 0.85858 0.80694 0.78886 0.78100 1.19795 1.21142 1.21044 0.94116 0.89787 0.92214 0.93049 0.89904 0.94183 0.84288 0.82653 0.84289 0.86406 0.87748 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.28 127.69 1.19 2.09 16 2 N -0.52 -18.51 4.03 -745.10 -3.00 -21.51 16 3 C 0.04 1.25 9.33 127.69 1.19 2.44 16 4 C 0.11 4.02 4.69 38.21 0.18 4.20 16 5 C -0.18 -5.87 8.63 22.44 0.19 -5.67 16 6 C 0.07 2.30 7.30 22.36 0.16 2.46 16 7 F -0.15 -4.35 17.27 44.97 0.78 -3.57 16 8 C -0.15 -4.40 10.02 22.34 0.22 -4.18 16 9 C -0.10 -3.49 9.26 22.24 0.21 -3.28 16 10 C -0.09 -3.45 5.00 -19.73 -0.10 -3.55 16 11 C 0.27 13.23 2.54 43.42 0.11 13.34 16 12 H 0.03 1.52 7.62 -2.39 -0.02 1.50 16 13 N -0.82 -37.49 8.13 -174.95 -1.42 -38.91 16 14 C -0.51 -27.52 8.71 25.60 0.22 -27.29 16 15 H 0.04 2.01 7.74 -2.91 -0.02 1.99 16 16 C 0.04 2.06 5.39 84.65 0.46 2.52 16 17 N -0.88 -51.33 12.77 21.45 0.27 -51.05 16 18 Si 0.94 43.89 29.54 68.60 2.03 45.91 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H 0.04 0.98 7.26 -2.39 -0.02 0.96 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 25 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.04 1.06 7.47 -2.39 -0.02 1.04 16 28 H 0.14 3.86 7.08 -2.91 -0.02 3.84 16 29 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.14 4.42 6.28 -2.91 -0.02 4.40 16 31 H 0.32 13.66 7.20 -89.70 -0.65 13.01 16 32 H 0.31 12.59 9.06 -89.69 -0.81 11.77 16 33 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -61.74 281.83 2.36 -59.37 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.32 Total: 26.68 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.03 Total: -16.93 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.15 Total: -111.47 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.74 2.36 -59.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270278.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.232 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds