Wall clock time and date at job start Mon Mar 30 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48501 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47039 * 299.99721 * 3 2 1 6 6 H 1.48501 * 109.47130 * 60.00120 * 3 2 1 7 7 C 1.38809 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99754 * 197.36856 * 7 2 1 9 9 N 1.36935 * 120.00316 * 17.37283 * 7 2 1 10 10 C 1.46930 * 120.62929 * 207.67262 * 9 7 2 11 11 C 1.53184 * 108.77549 * 233.60628 * 10 9 7 12 12 C 1.53036 * 109.31665 * 305.36949 * 11 10 9 13 13 C 1.53036 * 109.54133 * 61.36416 * 12 11 10 14 14 H 1.09001 * 109.49663 * 58.58633 * 13 12 11 15 15 C 1.50700 * 109.50129 * 178.65420 * 13 12 11 16 16 N 1.30733 * 125.53908 * 24.96171 * 15 13 12 17 17 C 1.34448 * 109.94672 * 179.97438 * 16 15 13 18 18 O 1.21719 * 125.92462 * 180.02562 * 17 16 15 19 19 N 1.34998 * 108.14794 * 359.97438 * 17 16 15 20 20 H 0.96995 * 126.85860 * 179.97438 * 19 17 16 21 21 N 1.35154 * 125.53672 * 204.64842 * 15 13 12 22 22 H 0.96994 * 126.65144 * 0.03995 * 21 15 13 23 23 C 1.46926 * 120.63124 * 27.67157 * 9 7 2 24 24 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.58455 * 113.82100 * 10 9 7 26 26 H 1.08996 * 109.70590 * 353.46595 * 10 9 7 27 27 H 1.09006 * 109.49764 * 185.41299 * 11 10 9 28 28 H 1.08997 * 109.52686 * 65.33697 * 11 10 9 29 29 H 1.09007 * 109.46020 * 301.34235 * 12 11 10 30 30 H 1.08997 * 109.46393 * 181.38863 * 12 11 10 31 31 H 1.08997 * 109.58534 * 6.61052 * 23 9 7 32 32 H 1.08998 * 109.58515 * 246.18155 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 1.8194 -3.6547 0.1815 11 6 2.0748 -4.6100 -0.9884 12 6 0.8193 -4.6900 -1.8599 13 6 0.5013 -3.3050 -2.4279 14 1 1.3500 -2.9472 -3.0108 15 6 -0.7158 -3.3913 -3.3123 16 7 -1.6558 -4.2957 -3.2253 17 6 -2.5911 -4.0770 -4.1660 18 8 -3.5933 -4.7442 -4.3453 19 7 -2.2265 -2.9886 -4.8765 20 1 -2.7061 -2.5920 -5.6205 21 7 -1.0159 -2.5428 -4.3206 22 1 -0.4953 -1.7759 -4.6063 23 6 0.2280 -2.3348 -1.2741 24 1 -0.4849 0.8400 -0.0004 25 1 1.0469 -4.0689 0.8296 26 1 2.7393 -3.5193 0.7502 27 1 2.3141 -5.6012 -0.6032 28 1 2.9088 -4.2405 -1.5850 29 1 -0.0199 -5.0367 -1.2568 30 1 0.9900 -5.3881 -2.6794 31 1 0.0987 -1.3266 -1.6675 32 1 -0.6742 -2.6414 -0.7448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289352530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:06 Heat of formation + Delta-G solvation = 69.099946 kcal Electronic energy + Delta-G solvation = -17257.664491 eV Core-core repulsion = 14449.210766 eV Total energy + Delta-G solvation = -2808.453725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.03297 -37.90155 -36.80146 -33.70117 -32.65299 -31.47325 -30.19914 -29.48250 -25.40289 -23.77289 -22.30568 -21.50868 -20.89844 -19.46363 -18.64015 -16.92323 -16.32058 -15.95933 -15.24194 -15.03834 -14.26750 -14.00095 -13.71053 -13.19215 -12.78802 -12.43722 -12.36763 -11.87134 -11.19371 -10.98059 -10.88625 -10.83649 -10.47688 -10.29225 -10.20159 -9.99146 -9.90881 -9.63689 -9.57764 -8.64731 -8.49339 -6.84886 -5.95059 -3.37498 1.63168 1.72766 3.25326 3.35580 3.37143 3.71158 3.97728 4.36501 4.63362 5.05598 5.21029 5.44668 5.55112 5.59157 5.79349 5.85519 5.91360 6.06812 6.26777 6.34704 6.45132 6.54332 6.69406 6.76821 6.92463 7.08147 7.36225 7.37557 7.66525 8.23344 8.27071 8.45328 9.03345 9.66719 10.23426 11.13271 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.007802 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.515978 B = 3587.908385 C = 4313.368448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.587 5.587 10 C 0.140 3.860 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.053 4.053 14 H 0.095 0.905 15 C 0.430 3.570 16 N -0.576 5.576 17 C 0.638 3.362 18 O -0.551 6.551 19 N -0.549 5.549 20 H 0.437 0.563 21 N -0.499 5.499 22 H 0.448 0.552 23 C 0.184 3.816 24 H 0.255 0.745 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 -2.729 -7.947 9.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.014 3.986 11 C -0.173 4.173 12 C -0.131 4.131 13 C -0.077 4.077 14 H 0.113 0.887 15 C 0.157 3.843 16 N -0.327 5.327 17 C 0.335 3.665 18 O -0.423 6.423 19 N -0.308 5.308 20 H 0.285 0.715 21 N -0.231 5.231 22 H 0.295 0.705 23 C 0.055 3.945 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.415 -3.693 -7.631 8.815 hybrid contribution 0.304 2.299 -1.238 2.629 sum 2.719 -1.394 -8.870 9.381 Atomic orbital electron populations 1.70041 1.05243 1.25639 1.53534 1.25084 0.95285 0.98572 1.00707 0.86231 0.79469 0.83783 0.77362 1.20103 1.21630 1.21600 1.19257 0.92970 0.84568 1.41505 0.91185 1.43982 1.35829 1.02006 1.49040 1.21016 0.97940 0.86485 0.93172 1.22039 0.97065 0.99501 0.98738 1.21291 0.98999 0.93564 0.99202 1.21239 0.89003 1.01375 0.96082 0.88680 1.24495 0.94684 0.82202 0.82955 1.71854 1.06088 1.28216 1.26582 1.18470 0.87034 0.79674 0.81293 1.90945 1.27193 1.51785 1.72412 1.47009 1.16024 1.31624 1.36133 0.71543 1.44990 1.15692 1.30414 1.32011 0.70479 1.20806 0.90088 0.96732 0.86841 0.93502 0.95824 0.92508 0.92303 0.92272 0.90588 0.92788 0.89075 0.94859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 11.19 55.49 0.62 -23.61 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 19.97 29.59 -169.99 -5.03 14.94 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.31 9.59 -15.06 -0.14 -6.46 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -13.21 2.99 -172.32 -0.52 -13.72 16 10 C 0.14 2.65 6.51 -3.71 -0.02 2.63 16 11 C -0.13 -2.06 6.08 -26.62 -0.16 -2.22 16 12 C -0.09 -1.45 4.80 -26.69 -0.13 -1.57 16 13 C -0.05 -0.87 2.81 -91.65 -0.26 -1.12 16 14 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.43 6.89 7.05 -155.12 -1.09 5.80 16 16 N -0.58 -11.01 10.62 -13.83 -0.15 -11.16 16 17 C 0.64 12.14 9.35 -87.01 -0.81 11.33 16 18 O -0.55 -12.28 18.06 5.17 0.09 -12.18 16 19 N -0.55 -7.51 7.48 27.64 0.21 -7.30 16 20 H 0.44 4.36 8.96 -182.31 -1.63 2.72 16 21 N -0.50 -6.32 7.46 32.73 0.24 -6.07 16 22 H 0.45 4.03 8.96 -182.31 -1.63 2.39 16 23 C 0.18 3.86 4.58 -3.71 -0.02 3.84 16 24 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.32 8.06 -51.92 -0.42 0.90 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 2.09 6.04 -51.93 -0.31 1.77 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 269.38 15.07 4.06 4.06 Total: -1.00 -32.32 269.38 -9.69 -42.01 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.50 Total: 0.84 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.73 Total: 12.19 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.41 Total: -61.87 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.32 -9.69 -42.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289352530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.114 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds