Wall clock time and date at job start Mon Mar 30 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99952 * 2 1 4 4 H 1.48501 * 109.46888 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47039 * 299.99721 * 3 2 1 6 6 H 1.48501 * 109.47130 * 60.00120 * 3 2 1 7 7 C 1.38809 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99754 * 197.36856 * 7 2 1 9 9 N 1.36935 * 120.00316 * 17.37283 * 7 2 1 10 10 C 1.46930 * 120.62929 * 207.67262 * 9 7 2 11 11 C 1.53184 * 108.77549 * 233.60628 * 10 9 7 12 12 C 1.53036 * 109.31665 * 305.36949 * 11 10 9 13 13 C 1.53036 * 109.54133 * 61.36416 * 12 11 10 14 14 H 1.09001 * 109.49663 * 58.58633 * 13 12 11 15 15 C 1.50700 * 109.50129 * 178.65420 * 13 12 11 16 16 N 1.30733 * 125.53908 * 24.96171 * 15 13 12 17 17 C 1.34448 * 109.94672 * 179.97438 * 16 15 13 18 18 O 1.21719 * 125.92462 * 180.02562 * 17 16 15 19 19 N 1.34998 * 108.14794 * 359.97438 * 17 16 15 20 20 H 0.96995 * 126.85860 * 179.97438 * 19 17 16 21 21 N 1.35154 * 125.53672 * 204.64842 * 15 13 12 22 22 H 0.96994 * 126.65144 * 0.03995 * 21 15 13 23 23 C 1.46926 * 120.63124 * 27.67157 * 9 7 2 24 24 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.58455 * 113.82100 * 10 9 7 26 26 H 1.08996 * 109.70590 * 353.46595 * 10 9 7 27 27 H 1.09006 * 109.49764 * 185.41299 * 11 10 9 28 28 H 1.08997 * 109.52686 * 65.33697 * 11 10 9 29 29 H 1.09007 * 109.46020 * 301.34235 * 12 11 10 30 30 H 1.08997 * 109.46393 * 181.38863 * 12 11 10 31 31 H 1.08997 * 109.58534 * 6.61052 * 23 9 7 32 32 H 1.08998 * 109.58515 * 246.18155 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 1.8194 -3.6547 0.1815 11 6 2.0748 -4.6100 -0.9884 12 6 0.8193 -4.6900 -1.8599 13 6 0.5013 -3.3050 -2.4279 14 1 1.3500 -2.9472 -3.0108 15 6 -0.7158 -3.3913 -3.3123 16 7 -1.6558 -4.2957 -3.2253 17 6 -2.5911 -4.0770 -4.1660 18 8 -3.5933 -4.7442 -4.3453 19 7 -2.2265 -2.9886 -4.8765 20 1 -2.7061 -2.5920 -5.6205 21 7 -1.0159 -2.5428 -4.3206 22 1 -0.4953 -1.7759 -4.6063 23 6 0.2280 -2.3348 -1.2741 24 1 -0.4849 0.8400 -0.0004 25 1 1.0469 -4.0689 0.8296 26 1 2.7393 -3.5193 0.7502 27 1 2.3141 -5.6012 -0.6032 28 1 2.9088 -4.2405 -1.5850 29 1 -0.0199 -5.0367 -1.2568 30 1 0.9900 -5.3881 -2.6794 31 1 0.0987 -1.3266 -1.6675 32 1 -0.6742 -2.6414 -0.7448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289352530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:06 Heat of formation + Delta-G solvation = 44.588142 kcal Electronic energy + Delta-G solvation = -17258.727403 eV Core-core repulsion = 14449.210766 eV Total energy + Delta-G solvation = -2809.516636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.37011 -39.40157 -38.30049 -35.29977 -34.13654 -32.90755 -31.84083 -30.87398 -27.18341 -25.19343 -23.88540 -22.92705 -22.26750 -20.86768 -19.96208 -18.69049 -17.63592 -17.35083 -16.84232 -16.62664 -15.85138 -15.47190 -15.24057 -14.80551 -14.21920 -14.07982 -13.79497 -13.32973 -12.90462 -12.59967 -12.46515 -12.37657 -12.05906 -11.91050 -11.62455 -11.44499 -11.40686 -11.09185 -11.06527 -10.54231 -9.83562 -8.67324 -7.85415 -5.30482 0.30193 0.56048 1.50358 1.55622 1.64467 2.26462 2.54078 2.66967 3.30066 3.39455 3.73567 3.93913 4.18847 4.23692 4.44308 4.54146 4.57513 4.65875 4.92394 5.10066 5.17864 5.26279 5.30636 5.34605 5.36200 5.57154 5.71911 5.74186 6.24095 6.40965 6.94519 7.08023 7.16040 7.85977 8.38782 9.21018 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.007802 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.515978 B = 3587.908385 C = 4313.368448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.302 1.302 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.037 4.037 14 H 0.124 0.876 15 C 0.430 3.570 16 N -0.609 5.609 17 C 0.624 3.376 18 O -0.595 6.595 19 N -0.524 5.524 20 H 0.458 0.542 21 N -0.469 5.469 22 H 0.468 0.532 23 C 0.195 3.805 24 H 0.249 0.751 25 H 0.009 0.991 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.071 0.929 32 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -2.599 -9.374 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.229 1.229 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.326 5.326 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.128 4.128 13 C -0.060 4.060 14 H 0.142 0.858 15 C 0.155 3.845 16 N -0.361 5.361 17 C 0.321 3.679 18 O -0.472 6.472 19 N -0.283 5.283 20 H 0.309 0.691 21 N -0.203 5.203 22 H 0.321 0.679 23 C 0.068 3.932 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 4.369 -3.514 -9.115 10.701 hybrid contribution -0.266 2.255 -0.743 2.389 sum 4.103 -1.259 -9.858 10.752 Atomic orbital electron populations 1.70198 1.06636 1.25778 1.55542 1.25748 0.95856 1.01344 1.01294 0.85267 0.78865 0.80071 0.76572 1.18859 1.21398 1.22933 1.19577 0.93221 0.85488 1.40256 0.90837 1.44249 1.35785 1.02663 1.49938 1.21195 0.97426 0.85870 0.94765 1.21906 0.97089 0.99768 0.97093 1.21280 0.98416 0.93412 0.99702 1.20971 0.89813 1.00623 0.94641 0.85797 1.24306 0.94135 0.82389 0.83644 1.71752 1.06947 1.29991 1.27454 1.18484 0.86819 0.80635 0.81958 1.90901 1.28862 1.53645 1.73762 1.46709 1.15795 1.30198 1.35579 0.69104 1.44962 1.14842 1.29930 1.30531 0.67946 1.20458 0.88297 0.96686 0.87804 0.94153 0.97280 0.92157 0.89609 0.90939 0.92757 0.90410 0.91089 0.98934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.14 11.19 21.65 0.24 -50.89 16 2 C -0.05 -2.38 4.91 84.86 0.42 -1.96 16 3 Si 0.96 40.77 29.59 68.60 2.03 42.80 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.26 -12.54 9.59 84.03 0.81 -11.73 16 8 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 9 N -0.60 -26.88 2.99 -699.09 -2.09 -28.97 16 10 C 0.13 4.89 6.51 86.36 0.56 5.45 16 11 C -0.12 -3.32 6.08 30.67 0.19 -3.13 16 12 C -0.09 -2.61 4.80 30.62 0.15 -2.47 16 13 C -0.04 -1.14 2.81 -11.46 -0.03 -1.18 16 14 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 15 C 0.43 13.05 7.05 138.03 0.97 14.02 16 16 N -0.61 -22.88 10.62 -316.05 -3.36 -26.23 16 17 C 0.62 23.38 9.35 179.09 1.67 25.06 16 18 O -0.60 -26.75 18.06 -4.41 -0.08 -26.83 16 19 N -0.52 -13.26 7.48 -184.56 -1.38 -14.64 16 20 H 0.46 7.98 8.96 -213.08 -1.91 6.07 16 21 N -0.47 -10.67 7.46 -50.36 -0.38 -11.04 16 22 H 0.47 6.82 8.96 -213.08 -1.91 4.91 16 23 C 0.20 8.21 4.58 86.37 0.40 8.61 16 24 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 25 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 26 H 0.06 2.14 7.94 -2.39 -0.02 2.12 16 27 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.84 8.06 -2.38 -0.02 1.82 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.26 6.04 -2.39 -0.01 3.25 16 32 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -71.30 269.38 -2.55 -73.84 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -2.66 Total: 9.31 kcal Atomic # 6 Polarization: 27.53 SS G_CDS: 5.13 Total: 32.66 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -6.96 Total: -131.78 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.08 Total: -26.83 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -71.30 -2.55 -73.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289352530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.432 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds