Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30282 * 125.90309 * 2 1 4 4 N 1.39891 * 109.25667 * 179.80662 * 3 2 1 5 5 C 1.46498 * 125.75018 * 180.29492 * 4 3 2 6 6 C 1.34875 * 108.51067 * 0.38900 * 4 3 2 7 7 N 1.37983 * 126.45526 * 179.88082 * 6 4 3 8 8 C 1.39389 * 107.08901 * 359.62240 * 6 4 3 9 9 C 1.46700 * 126.52375 * 180.25388 * 8 6 4 10 10 O 1.21717 * 119.99264 * 90.00749 * 9 8 6 11 11 N 1.34775 * 120.00488 * 269.99969 * 9 8 6 12 12 C 1.46497 * 119.99606 * 0.02562 * 11 9 8 13 13 C 1.37011 * 119.99820 * 179.97438 * 11 9 8 14 14 H 1.07997 * 120.00142 * 22.47242 * 13 11 9 15 15 C 1.38943 * 119.99722 * 202.45834 * 13 11 9 16 16 N 1.31441 * 120.00099 * 11.59231 * 15 13 11 17 17 Si 1.86803 * 119.99950 * 191.58125 * 15 13 11 18 18 H 1.48500 * 109.46793 * 60.00987 * 17 15 13 19 19 H 1.48504 * 109.47031 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47133 * 300.00831 * 17 15 13 21 21 H 1.09000 * 109.46880 * 269.95233 * 1 2 3 22 22 H 1.08996 * 109.47272 * 29.95465 * 1 2 3 23 23 H 1.09004 * 109.46757 * 149.95982 * 1 2 3 24 24 H 1.08998 * 109.47068 * 270.11477 * 5 4 3 25 25 H 1.09007 * 109.46871 * 30.11420 * 5 4 3 26 26 H 1.08994 * 109.47714 * 150.11074 * 5 4 3 27 27 H 0.96999 * 120.00299 * 179.68846 * 7 6 4 28 28 H 0.97007 * 119.99928 * 359.41974 * 7 6 4 29 29 H 1.09001 * 109.47045 * 92.19521 * 12 11 9 30 30 H 1.09001 * 109.46739 * 212.18598 * 12 11 9 31 31 H 1.08998 * 109.47624 * 332.18656 * 12 11 9 32 32 H 0.96993 * 120.00300 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2710 1.0553 0.0000 4 7 3.6112 0.6546 0.0045 5 6 4.7719 1.5485 0.0120 6 6 3.6552 -0.6935 -0.0014 7 7 4.7911 -1.4768 -0.0020 8 6 2.3368 -1.1462 -0.0009 9 6 1.8940 -2.5448 -0.0008 10 8 1.7107 -3.1250 1.0534 11 7 1.6900 -3.1872 -1.1679 12 6 1.9111 -2.4889 -2.4367 13 6 1.2770 -4.4936 -1.1677 14 1 0.7739 -4.9007 -0.3032 15 6 1.5050 -5.2944 -2.2800 16 7 2.3084 -4.8803 -3.2344 17 14 0.6702 -6.9597 -2.4189 18 1 -0.8035 -6.7773 -2.4044 19 1 1.0761 -7.6125 -3.6895 20 1 1.0747 -7.8133 -1.2731 21 1 -0.3633 -0.0009 1.0277 22 1 -0.3633 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5145 24 1 5.0628 1.7748 -1.0138 25 1 4.5150 2.4730 0.5293 26 1 5.6012 1.0629 0.5261 27 1 4.7135 -2.4437 -0.0019 28 1 5.6673 -1.0605 -0.0064 29 1 2.9345 -2.6586 -2.7713 30 1 1.2163 -2.8683 -3.1860 31 1 1.7469 -1.4205 -2.2969 32 1 2.4679 -5.4395 -4.0107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308818181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 28.370213 kcal Electronic energy + Delta-G solvation = -17380.392097 eV Core-core repulsion = 14570.172198 eV Total energy + Delta-G solvation = -2810.219898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.19559 -39.77272 -36.50974 -36.06186 -34.32720 -33.41536 -30.50927 -29.70775 -28.10254 -26.91444 -25.87400 -22.88683 -21.06153 -20.47037 -18.85917 -18.26838 -17.76160 -17.20997 -16.55392 -16.47921 -15.95761 -15.59404 -15.04338 -14.36959 -14.26228 -14.03857 -13.61412 -13.28334 -13.26728 -13.21679 -13.11593 -13.00889 -12.62214 -12.32909 -12.11189 -11.86291 -11.59457 -10.98634 -10.39617 -9.65106 -9.61116 -8.60699 -8.28250 -5.93032 1.07525 1.41916 1.42683 1.45095 1.54639 1.69858 2.04949 2.33860 2.82363 3.13318 3.28837 3.67441 4.07071 4.38340 4.44584 4.48835 4.64400 4.67885 4.75336 4.77965 4.98514 5.03295 5.08130 5.36669 5.48615 5.51288 5.79936 6.16713 6.31204 6.56425 6.66505 6.98606 7.22900 7.54170 8.16222 8.73648 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.007574 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.660834 B = 3695.787607 C = 3956.517899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.121 3.879 3 N -0.327 5.327 4 N -0.396 5.396 5 C 0.094 3.906 6 C 0.398 3.602 7 N -0.828 5.828 8 C -0.364 4.364 9 C 0.531 3.469 10 O -0.640 6.640 11 N -0.447 5.447 12 C 0.144 3.856 13 C -0.344 4.344 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.896 5.896 17 Si 0.989 3.011 18 H -0.268 1.268 19 H -0.271 1.271 20 H -0.276 1.276 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.416 0.584 28 H 0.417 0.583 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 10.644 0.391 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.046 4.046 3 N -0.150 5.150 4 N -0.184 5.184 5 C -0.045 4.045 6 C 0.165 3.835 7 N -0.377 5.377 8 C -0.383 4.383 9 C 0.320 3.680 10 O -0.528 6.528 11 N -0.164 5.164 12 C 0.000 4.000 13 C -0.472 4.472 14 H 0.091 0.909 15 C -0.202 4.202 16 N -0.535 5.535 17 Si 0.813 3.187 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.201 1.201 21 H 0.102 0.898 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.247 0.753 28 H 0.249 0.751 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.745 11.702 0.657 13.053 hybrid contribution 0.142 -2.048 -0.165 2.060 sum 5.887 9.654 0.493 11.318 Atomic orbital electron populations 1.20213 0.85594 1.03454 1.03569 1.22317 0.97463 0.88776 0.96034 1.76832 0.85662 1.21259 1.31216 1.48223 1.06538 1.01858 1.61817 1.22161 0.83362 0.94276 1.04689 1.17939 0.88314 0.83606 0.93606 1.41272 1.04058 1.08616 1.83794 1.19249 0.91829 0.93772 1.33488 1.17390 0.81727 0.85795 0.83049 1.90544 1.58910 1.70336 1.32988 1.43716 1.57038 1.10628 1.05044 1.21125 1.00681 0.92895 0.85259 1.19613 1.36811 0.87620 1.03150 0.90938 1.26069 0.96217 1.02640 0.95287 1.70092 1.33856 1.39464 1.10071 0.85060 0.78746 0.77223 0.77681 1.19349 1.19508 1.20091 0.89779 0.88413 0.92063 0.89421 0.87974 0.87772 0.75315 0.75104 0.94089 0.93131 0.93683 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.28 71.24 0.73 -1.61 16 2 C 0.12 4.78 6.95 43.59 0.30 5.08 16 3 N -0.33 -11.67 12.47 -46.61 -0.58 -12.25 16 4 N -0.40 -12.14 4.00 -365.24 -1.46 -13.60 16 5 C 0.09 1.65 11.24 127.77 1.44 3.08 16 6 C 0.40 14.27 8.01 132.71 1.06 15.33 16 7 N -0.83 -23.96 9.04 -54.52 -0.49 -24.45 16 8 C -0.36 -16.01 4.09 -19.98 -0.08 -16.09 16 9 C 0.53 28.34 6.92 86.45 0.60 28.94 16 10 O -0.64 -39.21 16.80 -4.40 -0.07 -39.29 16 11 N -0.45 -24.26 3.02 -663.39 -2.00 -26.26 16 12 C 0.14 6.96 8.54 127.77 1.09 8.05 16 13 C -0.34 -20.01 9.29 84.05 0.78 -19.23 16 14 H 0.07 4.49 7.40 -2.91 -0.02 4.46 16 15 C 0.00 -0.02 5.11 84.92 0.43 0.41 16 16 N -0.90 -47.80 10.61 21.66 0.23 -47.57 16 17 Si 0.99 42.78 29.57 68.60 2.03 44.81 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 22 H 0.10 2.65 8.14 -2.39 -0.02 2.64 16 23 H 0.06 2.25 8.01 -2.38 -0.02 2.23 16 24 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.10 1.23 7.47 -2.39 -0.02 1.21 16 27 H 0.42 13.84 8.71 -92.71 -0.81 13.03 16 28 H 0.42 7.95 8.05 -92.70 -0.75 7.21 16 29 H 0.04 2.03 7.54 -2.39 -0.02 2.01 16 30 H 0.05 2.53 7.06 -2.39 -0.02 2.51 16 31 H 0.04 1.98 6.56 -2.39 -0.02 1.97 16 32 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -74.92 278.91 3.62 -71.30 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.39 Total: 23.33 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 6.36 Total: 23.97 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -4.30 Total: -124.12 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.07 Total: -39.29 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.92 3.62 -71.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308818181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.670 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds