Wall clock time and date at job start Mon Mar 30 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99891 * 2 1 4 4 O 1.42906 * 109.47186 * 74.99700 * 3 2 1 5 5 C 1.36116 * 116.99948 * 75.00009 * 4 3 2 6 6 C 1.40843 * 119.84670 * 180.02562 * 5 4 3 7 7 C 1.35866 * 119.65920 * 180.02562 * 6 5 4 8 8 C 1.41435 * 119.36543 * 0.02562 * 7 6 5 9 9 N 1.31803 * 120.15155 * 180.02562 * 8 7 6 10 10 C 1.46502 * 119.99952 * 353.15211 * 9 8 7 11 11 C 1.50699 * 109.46785 * 114.00022 * 10 9 8 12 12 H 1.08001 * 120.00614 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99899 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00219 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00010 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46914 * 90.00160 * 15 13 11 17 17 H 1.48498 * 109.47308 * 210.00125 * 15 13 11 18 18 H 1.48493 * 109.47274 * 330.00190 * 15 13 11 19 19 N 1.37264 * 119.69025 * 0.02562 * 8 7 6 20 20 H 0.97003 * 119.83182 * 179.97438 * 19 8 7 21 21 C 1.35302 * 119.85155 * 0.02562 * 5 4 3 22 22 H 1.08997 * 109.47706 * 300.00169 * 1 2 3 23 23 H 1.09003 * 109.46459 * 60.00755 * 1 2 3 24 24 H 1.09005 * 109.46917 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47176 * 314.99754 * 3 2 1 26 26 H 1.09001 * 109.47308 * 194.99391 * 3 2 1 27 27 H 1.07999 * 120.17322 * 359.72106 * 6 5 4 28 28 H 1.08006 * 120.31577 * 179.97438 * 7 6 5 29 29 H 1.09003 * 109.47444 * 233.99781 * 10 9 8 30 30 H 1.09000 * 109.47279 * 353.99987 * 10 9 8 31 31 H 0.96998 * 120.00129 * 180.02562 * 14 13 11 32 32 H 1.08000 * 119.66919 * 0.02725 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8825 1.3014 5 6 2.7199 1.4125 2.2685 6 6 2.6479 1.9386 3.5729 7 6 3.4831 1.4670 4.5352 8 6 4.4140 0.4531 4.2096 9 7 5.2312 -0.0161 5.1311 10 6 5.2824 0.6125 6.4534 11 6 4.7709 -0.3549 7.4895 12 1 4.4404 -1.3393 7.1927 13 6 4.7240 0.0171 8.8163 14 7 4.2781 -0.8273 9.7207 15 14 5.2950 1.7200 9.3297 16 1 4.1479 2.6619 9.2822 17 1 5.8338 1.6655 10.7124 18 1 6.3571 2.1863 8.4026 19 7 4.4622 -0.0399 2.9294 20 1 5.1000 -0.7351 2.7038 21 6 3.6149 0.4420 1.9722 22 1 -0.3634 0.5138 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4942 1.9329 -0.7267 26 1 3.0648 1.2337 -0.2659 27 1 1.9357 2.7164 3.8060 28 1 3.4373 1.8631 5.5389 29 1 6.3118 0.8843 6.6869 30 1 4.6610 1.5080 6.4543 31 1 4.2447 -0.5655 10.6541 32 1 3.6617 0.0462 0.9685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380016261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:51 Heat of formation + Delta-G solvation = -15.249303 kcal Electronic energy + Delta-G solvation = -16387.788643 eV Core-core repulsion = 13543.384509 eV Total energy + Delta-G solvation = -2844.404134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42450 -38.76189 -36.74982 -34.46148 -32.69552 -32.24696 -29.01011 -27.99157 -26.68914 -25.52130 -23.06980 -22.72905 -20.35829 -19.06176 -17.46816 -17.05269 -16.73088 -16.17443 -15.46159 -15.32274 -14.76431 -14.30328 -14.21710 -14.08072 -13.61795 -12.98800 -12.90821 -12.24988 -11.97520 -11.83538 -11.53694 -11.11752 -10.95242 -10.52745 -10.37886 -10.32056 -9.74687 -9.49353 -8.92635 -8.61498 -8.12555 -6.40272 -6.02024 -3.99358 1.32156 2.43179 3.16975 3.29911 3.37693 3.41204 3.46038 3.56450 4.12691 4.44342 4.70482 4.76323 4.99181 5.06674 5.16203 5.21778 5.28566 5.37035 5.48652 5.69401 5.99049 6.19648 6.57512 6.59551 6.61789 6.90805 7.16556 7.26002 7.57297 7.72405 7.82654 8.50576 9.01948 9.12112 9.59678 11.11366 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044991 B = 0.004885 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.202518 B = 5730.649628 C = 5758.226703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.399 6.399 3 C 0.209 3.791 4 O -0.328 6.328 5 C -0.003 4.003 6 C -0.064 4.064 7 C -0.159 4.159 8 C 0.352 3.648 9 N -0.575 5.575 10 C 0.164 3.836 11 C -0.509 4.509 12 H 0.075 0.925 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.875 3.125 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.265 1.265 19 N -0.594 5.594 20 H 0.415 0.585 21 C 0.050 3.950 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.155 0.845 29 H 0.036 0.964 30 H -0.002 1.002 31 H 0.264 0.736 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 6.498 -21.337 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.319 6.319 3 C 0.095 3.905 4 O -0.244 6.244 5 C -0.055 4.055 6 C -0.088 4.088 7 C -0.182 4.182 8 C 0.081 3.919 9 N -0.299 5.299 10 C 0.036 3.964 11 C -0.547 4.547 12 H 0.094 0.906 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.190 1.190 19 N -0.215 5.215 20 H 0.252 0.748 21 C -0.076 4.076 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.147 0.853 28 H 0.172 0.828 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.074 0.926 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.393 5.843 -20.803 22.271 hybrid contribution -0.231 1.182 0.371 1.260 sum -5.624 7.025 -20.432 22.327 Atomic orbital electron populations 1.22794 0.80143 1.03011 1.00507 1.88022 1.21188 1.28913 1.93775 1.24082 0.99348 0.83325 0.83698 1.86237 1.58109 1.60618 1.19396 1.17632 0.96781 1.01112 0.89946 1.20460 0.99083 0.99464 0.89767 1.21946 0.97007 0.98393 1.00826 1.18777 0.95125 0.92104 0.85907 1.72316 1.24774 1.28911 1.03859 1.20166 0.96466 0.93933 0.85883 1.21071 1.41862 1.01543 0.90268 0.90644 1.24926 0.94933 0.97172 0.96343 1.69901 1.47080 1.35406 1.01625 0.86846 0.79659 0.85039 0.78213 1.20122 1.21026 1.18988 1.40887 1.35405 1.38779 1.06422 0.74836 1.21415 0.94079 0.97875 0.94264 0.92997 0.93926 0.89561 0.88148 0.88507 0.85322 0.82808 0.94586 0.98484 0.92637 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.40 -4.00 10.16 -59.04 -0.60 -4.60 16 3 C 0.21 1.77 6.39 101.05 0.65 2.42 16 4 O -0.33 -3.97 10.21 -43.92 -0.45 -4.41 16 5 C 0.00 -0.05 6.61 -39.64 -0.26 -0.31 16 6 C -0.06 -0.99 10.00 -39.45 -0.39 -1.38 16 7 C -0.16 -2.97 9.18 -39.22 -0.36 -3.33 16 8 C 0.35 7.10 7.65 -156.32 -1.20 5.90 16 9 N -0.57 -13.89 10.67 -61.54 -0.66 -14.55 16 10 C 0.16 4.33 5.00 -5.19 -0.03 4.30 16 11 C -0.51 -15.51 9.94 -34.44 -0.34 -15.86 16 12 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -28.53 13.96 55.43 0.77 -27.76 16 15 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 N -0.59 -9.35 5.40 -12.03 -0.06 -9.42 16 20 H 0.42 5.74 8.92 -40.82 -0.36 5.37 16 21 C 0.05 0.66 9.97 -16.47 -0.16 0.50 16 22 H 0.05 0.46 8.03 -51.93 -0.42 0.05 16 23 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 0.58 8.01 -51.93 -0.42 0.16 16 26 H 0.10 0.65 6.68 -51.93 -0.35 0.30 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.15 3.03 5.80 -52.48 -0.30 2.72 16 29 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 30 H 0.00 -0.06 4.68 -51.93 -0.24 -0.30 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.16 1.56 5.69 -52.49 -0.30 1.26 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -35.48 275.42 -6.23 -41.71 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.62 Total: 2.08 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.10 Total: -4.46 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.05 Total: -51.72 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.05 Total: -9.02 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -35.48 -6.23 -41.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380016261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.462 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds