Wall clock time and date at job start Mon Mar 30 2020 03:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34792 * 117.00108 * 2 1 4 4 O 1.21545 * 119.99995 * 359.97438 * 3 2 1 5 5 C 1.47111 * 120.00249 * 180.02562 * 3 2 1 6 6 C 1.46747 * 127.01928 * 0.15735 * 5 3 2 7 7 C 1.34439 * 106.36933 * 180.26133 * 6 5 3 8 8 N 1.36430 * 109.08439 * 359.76080 * 7 6 5 9 9 H 0.96996 * 124.80625 * 180.02562 * 8 7 6 10 10 C 1.34623 * 110.38264 * 359.97438 * 8 7 6 11 11 C 1.50704 * 125.89773 * 180.02562 * 10 8 7 12 12 N 1.46895 * 109.47030 * 260.03033 * 11 10 8 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47109 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99999 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99912 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47368 * 90.00198 * 18 16 14 20 20 H 1.48506 * 109.46940 * 210.00455 * 18 16 14 21 21 H 1.48505 * 109.47369 * 329.99926 * 18 16 14 22 22 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47423 * 300.00107 * 1 2 3 24 24 H 1.08996 * 109.47646 * 59.99986 * 1 2 3 25 25 H 1.08000 * 126.82001 * 0.02562 * 6 5 3 26 26 H 1.07994 * 125.45716 * 179.72562 * 7 6 5 27 27 H 1.08996 * 109.46908 * 140.02851 * 11 10 8 28 28 H 1.09002 * 109.46622 * 20.03024 * 11 10 8 29 29 H 1.00902 * 111.00273 * 303.95312 * 12 11 10 30 30 H 1.08992 * 109.47459 * 299.99826 * 13 12 11 31 31 H 1.09004 * 109.47040 * 59.99976 * 13 12 11 32 32 H 0.97007 * 120.00076 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4019 2.2204 -0.0005 5 6 3.5330 1.2780 -0.0006 6 6 4.4766 0.1542 -0.0044 7 6 5.7081 0.6935 0.0024 8 7 5.5995 2.0535 0.0047 9 1 6.3493 2.6688 0.0091 10 6 4.3042 2.4204 -0.0011 11 6 3.7868 3.8359 -0.0013 12 7 3.3868 4.2111 1.3614 13 6 2.8765 5.5882 1.3998 14 6 2.4764 5.9365 2.8104 15 1 2.5902 5.2079 3.5995 16 6 1.9651 7.1852 3.0936 17 7 1.6164 7.4893 4.3246 18 14 1.7691 8.4456 1.7289 19 1 0.4234 8.3068 1.1165 20 1 1.9184 9.8118 2.2916 21 1 2.8097 8.2203 0.6937 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 4.2308 -0.8974 -0.0077 26 1 6.6348 0.1391 0.0061 27 1 2.9257 3.9077 -0.6656 28 1 4.5707 4.5091 -0.3483 29 1 2.7071 3.5629 1.7302 30 1 3.6543 6.2734 1.0628 31 1 2.0091 5.6727 0.7451 32 1 1.2570 8.3680 4.5239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380039624.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:53 Heat of formation + Delta-G solvation = -39.306130 kcal Electronic energy + Delta-G solvation = -16583.777812 eV Core-core repulsion = 13738.330496 eV Total energy + Delta-G solvation = -2845.447316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18067 -39.59326 -36.16310 -35.30549 -32.44244 -31.20489 -30.05184 -27.81983 -26.97961 -24.29095 -22.68592 -21.09923 -20.67877 -19.47106 -17.87828 -16.81080 -16.44789 -16.06150 -15.80420 -14.87855 -14.62338 -14.05192 -13.52975 -13.38705 -13.22798 -12.97112 -12.85404 -12.75378 -12.29219 -11.86938 -11.66508 -11.21597 -10.70048 -10.57143 -10.46344 -10.18396 -9.80288 -9.26247 -8.85929 -8.56943 -8.23803 -7.47920 -6.02117 -3.99665 1.64926 2.43086 2.84986 3.32181 3.38457 3.40896 3.41066 3.47985 4.45421 4.85116 4.98346 5.21377 5.22237 5.27599 5.30589 5.31826 5.45088 5.58564 5.66698 5.96222 5.99026 6.12391 6.62375 6.73848 6.79600 6.98404 7.07196 7.42954 7.61283 7.88000 8.13138 8.34564 8.67601 9.05841 9.59485 11.11293 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.006408 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.793448 B = 4368.257010 C = 5053.678256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.536 3.464 4 O -0.510 6.510 5 C -0.232 4.232 6 C -0.147 4.147 7 C -0.026 4.026 8 N -0.538 5.538 9 H 0.420 0.580 10 C 0.144 3.856 11 C 0.108 3.892 12 N -0.670 5.670 13 C 0.165 3.835 14 C -0.513 4.513 15 H 0.078 0.922 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.267 1.267 22 H 0.096 0.904 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.148 0.852 26 H 0.170 0.830 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.344 0.656 30 H 0.025 0.975 31 H -0.015 1.015 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -15.071 -11.752 19.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.382 3.618 4 O -0.400 6.400 5 C -0.241 4.241 6 C -0.171 4.171 7 C -0.153 4.153 8 N -0.133 5.133 9 H 0.258 0.742 10 C 0.023 3.977 11 C -0.022 4.022 12 N -0.302 5.302 13 C 0.038 3.962 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.192 1.192 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.166 0.834 26 H 0.187 0.813 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.043 0.957 31 H 0.003 0.997 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.045 -14.394 -11.447 19.359 hybrid contribution -0.849 0.856 -0.990 1.560 sum 5.196 -13.538 -12.437 19.104 Atomic orbital electron populations 1.23195 0.76675 1.03102 1.02656 1.86534 1.22895 1.33105 1.85035 1.20158 0.87908 0.81141 0.72573 1.90895 1.66609 1.35672 1.46778 1.19318 0.89057 0.93424 1.22300 1.22002 0.90805 0.98111 1.06175 1.21713 0.99669 0.82413 1.11467 1.41560 1.07157 1.07683 1.56890 0.74230 1.20720 0.83045 0.95707 0.98232 1.20609 0.99716 0.87423 0.94436 1.60699 1.47564 1.05970 1.15971 1.20015 0.93132 0.85214 0.97885 1.21028 1.41250 0.99994 0.92883 0.90347 1.24889 0.94967 0.98065 0.95406 1.69901 1.43759 1.21703 1.18646 0.86805 0.78987 0.80950 0.82623 1.20259 1.21197 1.19219 0.88512 0.91767 0.92184 0.83380 0.81295 0.92071 0.90867 0.83770 0.95656 0.99699 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.29 10.47 -40.74 -0.43 -5.72 16 3 C 0.54 9.23 7.95 34.33 0.27 9.50 16 4 O -0.51 -10.21 14.24 -19.30 -0.27 -10.49 16 5 C -0.23 -3.69 6.33 -103.01 -0.65 -4.34 16 6 C -0.15 -1.84 11.00 -37.49 -0.41 -2.26 16 7 C -0.03 -0.27 11.87 -16.85 -0.20 -0.47 16 8 N -0.54 -6.29 5.89 -8.88 -0.05 -6.34 16 9 H 0.42 3.73 8.96 -40.82 -0.37 3.37 16 10 C 0.14 2.23 6.73 -81.51 -0.55 1.68 16 11 C 0.11 1.93 5.42 -4.98 -0.03 1.91 16 12 N -0.67 -14.85 6.48 -116.34 -0.75 -15.60 16 13 C 0.17 4.20 4.51 -4.97 -0.02 4.18 16 14 C -0.51 -15.28 9.87 -34.44 -0.34 -15.62 16 15 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 18 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 22 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.06 1.16 7.09 -51.93 -0.37 0.79 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.34 8.04 8.00 -39.29 -0.31 7.72 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 31 H -0.01 -0.38 7.57 -51.93 -0.39 -0.77 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 282.84 15.07 4.26 4.26 Total: -1.00 -34.78 282.84 -6.04 -40.83 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.94 Total: 5.10 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.96 Total: -1.97 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.03 Total: -49.54 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.70 Total: -16.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.78 -6.04 -40.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380039624.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.519 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds