Wall clock time and date at job start Mon Mar 30 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99883 * 2 1 4 4 H 1.48501 * 109.46888 * 270.00154 * 3 2 1 5 5 H 1.48492 * 109.47249 * 30.00018 * 3 2 1 6 6 H 1.48501 * 109.47064 * 150.00580 * 3 2 1 7 7 C 1.37872 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00192 * 173.39623 * 7 2 1 9 9 C 1.50698 * 119.99981 * 353.39820 * 7 2 1 10 10 C 1.53002 * 115.55206 * 85.13086 * 9 7 2 11 11 N 1.46898 * 109.46970 * 65.08931 * 10 9 7 12 12 C 1.46900 * 111.00035 * 174.46121 * 11 10 9 13 13 C 1.53005 * 109.47220 * 179.97438 * 12 11 10 14 14 H 1.09002 * 110.85503 * 308.79005 * 13 12 11 15 15 C 1.54478 * 110.96841 * 185.00367 * 13 12 11 16 16 N 1.46762 * 105.47241 * 216.46833 * 15 13 12 17 17 C 1.34417 * 111.29935 * 17.01175 * 16 15 13 18 18 O 1.21282 * 124.93988 * 179.55917 * 17 16 15 19 19 C 1.51282 * 110.11757 * 359.59684 * 17 16 15 20 20 C 1.53004 * 117.49853 * 230.80337 * 9 7 2 21 21 C 1.53004 * 117.49569 * 299.46157 * 9 7 2 22 22 H 0.97008 * 119.99753 * 4.94698 * 1 2 3 23 23 H 1.08996 * 109.47114 * 185.08839 * 10 9 7 24 24 H 1.09001 * 109.46972 * 305.09025 * 10 9 7 25 25 H 1.00898 * 111.00010 * 298.41623 * 11 10 9 26 26 H 1.08999 * 109.47317 * 299.99993 * 12 11 10 27 27 H 1.08998 * 109.47227 * 60.00218 * 12 11 10 28 28 H 1.09008 * 110.24761 * 335.46479 * 15 13 12 29 29 H 1.08991 * 110.24704 * 97.46399 * 15 13 12 30 30 H 0.97003 * 124.34968 * 197.03767 * 16 15 13 31 31 H 1.08999 * 110.48466 * 225.06851 * 19 17 16 32 32 H 1.08994 * 110.48374 * 102.42495 * 19 17 16 33 33 H 1.09000 * 117.49645 * 214.99792 * 20 9 7 34 34 H 1.08997 * 117.49647 * 0.02562 * 20 9 7 35 35 H 1.08993 * 117.50076 * 359.97438 * 21 9 7 36 36 H 1.09002 * 117.49914 * 144.97779 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0792 -1.1971 -0.1081 9 6 1.2586 -2.4948 0.1489 10 6 0.6938 -3.0842 -1.1452 11 7 1.7999 -3.4560 -2.0375 12 6 1.3013 -4.1456 -3.2348 13 6 2.4796 -4.5156 -4.1381 14 1 3.1145 -3.6489 -4.3223 15 6 1.9861 -5.1315 -5.4660 16 7 2.9631 -6.1742 -5.8010 17 6 3.7082 -6.5064 -4.7327 18 8 4.5836 -7.3458 -4.7304 19 6 3.2953 -5.6818 -3.5335 20 6 1.7539 -3.4749 1.2143 21 6 0.4504 -2.7023 1.4314 22 1 -0.4850 0.8370 -0.0724 23 1 0.1011 -3.9690 -0.9131 24 1 0.0635 -2.3433 -1.6370 25 1 2.3495 -2.6478 -2.2882 26 1 0.7719 -5.0512 -2.9386 27 1 0.6215 -3.4879 -3.7764 28 1 0.9969 -5.5700 -5.3339 29 1 1.9615 -4.3724 -6.2477 30 1 3.0591 -6.5721 -6.6804 31 1 4.1734 -5.3024 -3.0109 32 1 2.6748 -6.2725 -2.8598 33 1 1.6774 -4.5395 0.9933 34 1 2.6191 -3.1785 1.8074 35 1 0.4586 -1.8982 2.1671 36 1 -0.4839 -3.2584 1.3531 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398323777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:21 Heat of formation + Delta-G solvation = -19.530257 kcal Electronic energy + Delta-G solvation = -16848.867165 eV Core-core repulsion = 14140.110490 eV Total energy + Delta-G solvation = -2708.756675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25263 -37.24023 -36.47027 -34.36056 -31.93745 -31.14494 -27.99878 -26.11449 -25.14713 -22.79623 -20.97062 -20.66113 -20.50287 -18.99075 -17.40208 -16.26057 -15.91000 -15.11537 -14.80196 -14.60477 -14.20012 -14.03269 -13.69748 -13.28284 -13.03127 -12.67369 -12.23293 -11.87254 -11.44301 -11.20704 -11.09398 -10.97468 -10.85565 -10.79504 -10.43827 -10.12342 -9.80189 -9.42533 -9.20678 -8.76042 -8.43925 -8.08355 -7.55133 -6.04677 -4.10735 2.61593 3.25384 3.30932 3.34147 3.38142 4.33594 4.38138 4.46036 4.68531 5.03388 5.16320 5.24695 5.37648 5.50646 5.59003 5.63320 5.80704 5.91146 6.08302 6.16301 6.25294 6.46973 6.56568 6.73084 6.82719 6.82842 6.90818 6.92352 7.17520 7.51459 7.55063 7.86192 7.93083 8.20764 8.22895 8.48740 8.92857 9.55196 11.03192 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.005353 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.779733 B = 5229.504515 C = 5542.610787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.493 4.493 8 H 0.060 0.940 9 C 0.050 3.950 10 C 0.107 3.893 11 N -0.680 5.680 12 C 0.068 3.932 13 C -0.097 4.097 14 H 0.091 0.909 15 C 0.105 3.895 16 N -0.736 5.736 17 C 0.517 3.483 18 O -0.544 6.544 19 C -0.138 4.138 20 C -0.200 4.200 21 C -0.163 4.163 22 H 0.259 0.741 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.348 0.652 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.406 0.594 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -7.012 -9.577 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.049 3.951 10 C -0.022 4.022 11 N -0.311 5.311 12 C -0.062 4.062 13 C -0.116 4.116 14 H 0.110 0.890 15 C -0.020 4.020 16 N -0.391 5.391 17 C 0.304 3.696 18 O -0.421 6.421 19 C -0.178 4.178 20 C -0.237 4.237 21 C -0.201 4.201 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.167 0.833 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.244 0.756 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.878 -7.843 -9.041 12.001 hybrid contribution -0.150 1.632 -0.910 1.875 sum 0.728 -6.210 -9.951 11.752 Atomic orbital electron populations 1.69994 1.05871 1.26569 1.49331 1.24999 0.94759 0.98802 0.94713 0.86685 0.80088 0.83737 0.78057 1.20801 1.21301 1.19797 1.20467 0.93057 0.88812 1.50718 0.92187 1.18732 0.97396 0.93347 0.85634 1.21424 0.90793 0.95967 0.94017 1.60421 1.24131 1.32205 1.14363 1.21885 0.94050 0.99026 0.91242 1.22175 0.98039 0.98051 0.93344 0.89046 1.22131 0.92196 0.90043 0.97671 1.46269 1.37861 1.42073 1.12947 1.21261 0.80082 0.82189 0.86078 1.90730 1.31822 1.34577 1.84973 1.22308 1.02825 0.96566 0.96112 1.22874 0.97675 0.95842 1.07331 1.22533 0.92398 1.01360 1.03782 0.93134 0.94445 0.94627 0.83330 0.91410 0.95371 0.90897 0.90338 0.75638 0.87621 0.87466 0.91669 0.90921 0.90367 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.04 12.93 55.43 0.72 -23.33 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 3 Si 0.89 20.38 29.55 -169.99 -5.02 15.35 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.49 -12.71 8.33 -34.44 -0.29 -13.00 16 8 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.05 1.17 1.56 -155.66 -0.24 0.92 16 10 C 0.11 2.22 5.54 -3.82 -0.02 2.20 16 11 N -0.68 -11.79 6.41 -113.78 -0.73 -12.52 16 12 C 0.07 0.90 4.98 -3.82 -0.02 0.88 16 13 C -0.10 -1.06 3.31 -88.99 -0.29 -1.35 16 14 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.10 0.90 7.35 -3.12 -0.02 0.88 16 16 N -0.74 -7.36 6.24 -59.20 -0.37 -7.73 16 17 C 0.52 6.95 8.43 -10.86 -0.09 6.86 16 18 O -0.54 -9.54 18.03 5.56 0.10 -9.44 16 19 C -0.14 -1.69 6.36 -26.75 -0.17 -1.86 16 20 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 21 C -0.16 -3.78 9.44 -26.69 -0.25 -4.03 16 22 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 23 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.35 6.36 8.31 -39.29 -0.33 6.04 16 26 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.57 7.89 -51.92 -0.41 0.16 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.41 3.33 8.96 -40.82 -0.37 2.96 16 31 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.11 1.32 7.75 -51.93 -0.40 0.92 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 303.45 15.07 4.57 4.57 Total: -1.00 -29.48 303.45 -8.18 -37.66 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.69 Total: 6.81 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.76 Total: -11.38 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.38 Total: -43.58 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.10 Total: -9.44 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.48 -8.18 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398323777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.130 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds