Wall clock time and date at job start Mon Mar 30 2020 03:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46780 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47093 * 299.99711 * 3 2 1 6 6 H 1.48497 * 109.47351 * 59.99892 * 3 2 1 7 7 C 1.37882 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99565 * 173.55253 * 7 2 1 9 9 C 1.50696 * 119.99954 * 353.55242 * 7 2 1 10 10 C 1.53005 * 115.55053 * 85.40975 * 9 7 2 11 11 N 1.46502 * 109.47347 * 65.13467 * 10 9 7 12 12 C 1.34770 * 119.99828 * 178.27498 * 11 10 9 13 13 O 1.21276 * 120.00621 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99575 * 180.02562 * 12 11 10 15 15 H 1.08997 * 109.47224 * 320.00339 * 14 12 11 16 16 N 1.46904 * 109.46978 * 199.99963 * 14 12 11 17 17 C 1.53001 * 109.46777 * 80.00344 * 14 12 11 18 18 C 1.52999 * 117.49720 * 248.74280 * 17 14 12 19 19 C 1.53010 * 117.49691 * 180.08577 * 17 14 12 20 20 C 1.52997 * 117.49737 * 231.07388 * 9 7 2 21 21 C 1.52992 * 117.50261 * 299.73308 * 9 7 2 22 22 H 0.97010 * 119.99636 * 5.05740 * 1 2 3 23 23 H 1.09005 * 109.46945 * 305.13954 * 10 9 7 24 24 H 1.08997 * 109.47392 * 185.14016 * 10 9 7 25 25 H 0.97004 * 119.99406 * 358.28019 * 11 10 9 26 26 H 1.00902 * 110.99760 * 176.04769 * 16 14 12 27 27 H 1.00900 * 111.00009 * 299.99964 * 16 14 12 28 28 H 1.08996 * 115.55309 * 34.41750 * 17 14 12 29 29 H 1.09001 * 117.49841 * 0.02562 * 18 17 14 30 30 H 1.08996 * 117.49977 * 145.02422 * 18 17 14 31 31 H 1.08998 * 117.49593 * 214.98178 * 19 17 14 32 32 H 1.08997 * 117.49364 * 359.97438 * 19 17 14 33 33 H 1.09003 * 117.49841 * 215.00918 * 20 9 7 34 34 H 1.09004 * 117.50161 * 0.02669 * 20 9 7 35 35 H 1.09005 * 117.49752 * 359.97438 * 21 9 7 36 36 H 1.09007 * 117.50268 * 144.97613 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0793 -1.1972 -0.1045 9 6 1.2580 -2.4950 0.1477 10 6 0.7019 -3.0870 -1.1490 11 7 1.8110 -3.4602 -2.0305 12 6 1.5597 -4.0376 -3.2220 13 8 0.4155 -4.2480 -3.5648 14 6 2.7006 -4.4220 -4.1286 15 1 3.4646 -3.6451 -4.1005 16 7 2.2047 -4.5717 -5.5033 17 6 3.3029 -5.7469 -3.6566 18 6 4.7119 -5.7101 -3.0615 19 6 4.4832 -6.3093 -4.4514 20 6 1.7469 -3.4728 1.2180 21 6 0.4417 -2.7005 1.4252 22 1 -0.4850 0.8369 -0.0741 23 1 0.0753 -2.3470 -1.6469 24 1 0.1073 -3.9711 -0.9191 25 1 2.7261 -3.2916 -1.7565 26 1 2.9616 -4.7661 -6.1415 27 1 1.4947 -5.2868 -5.5557 28 1 2.5960 -6.4601 -3.2328 29 1 5.2096 -4.7419 -3.0058 30 1 4.9321 -6.3994 -2.2464 31 1 4.5529 -7.3925 -4.5501 32 1 4.8302 -5.7355 -5.3107 33 1 1.6723 -4.5379 0.9985 34 1 2.6081 -3.1750 1.8161 35 1 0.4448 -1.8949 2.1595 36 1 -0.4919 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404171531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:47 Heat of formation + Delta-G solvation = 4.256737 kcal Electronic energy + Delta-G solvation = -17137.725829 eV Core-core repulsion = 14430.000636 eV Total energy + Delta-G solvation = -2707.725194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49401 -37.47928 -36.55326 -33.27267 -32.95517 -31.96850 -27.48029 -25.68488 -24.59372 -22.47331 -21.33108 -21.02965 -19.66323 -19.21107 -17.39995 -16.23992 -15.57840 -15.15391 -14.89060 -14.75293 -14.54178 -13.99188 -13.57374 -13.14396 -12.78779 -12.38061 -12.02588 -11.70224 -11.61811 -11.46995 -11.01916 -10.91278 -10.65709 -10.51832 -10.47455 -10.27376 -9.64483 -9.24033 -8.95967 -8.64123 -8.50235 -8.24676 -8.04916 -6.07861 -4.16607 3.18997 3.25383 3.34348 3.36100 3.60550 3.78531 4.35578 4.62625 4.68175 4.76970 4.99934 5.07857 5.20471 5.30194 5.44735 5.55017 5.57789 5.73826 5.93541 6.01259 6.04106 6.33612 6.46924 6.57383 6.68560 6.88979 7.07688 7.11116 7.31222 7.43959 7.48779 7.51032 7.81663 8.33510 8.35256 8.84215 8.93883 9.50411 11.00104 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.006568 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.729159 B = 4262.378401 C = 4427.478206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.164 3.836 11 N -0.699 5.699 12 C 0.515 3.485 13 O -0.549 6.549 14 C 0.105 3.895 15 H 0.099 0.901 16 N -0.822 5.822 17 C -0.186 4.186 18 C -0.168 4.168 19 C -0.177 4.177 20 C -0.210 4.210 21 C -0.149 4.149 22 H 0.261 0.739 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.399 0.601 26 H 0.341 0.659 27 H 0.350 0.650 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.460 -9.864 -5.624 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.041 3.959 11 N -0.348 5.348 12 C 0.299 3.701 13 O -0.428 6.428 14 C -0.010 4.010 15 H 0.117 0.883 16 N -0.352 5.352 17 C -0.207 4.207 18 C -0.206 4.206 19 C -0.215 4.215 20 C -0.247 4.247 21 C -0.187 4.187 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.233 0.767 26 H 0.154 0.846 27 H 0.165 0.835 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.188 -9.096 -5.727 12.930 hybrid contribution 1.189 0.057 0.290 1.225 sum 8.377 -9.039 -5.437 13.470 Atomic orbital electron populations 1.69991 1.05915 1.26852 1.48246 1.24995 0.94804 0.98987 0.94274 0.86576 0.80158 0.83848 0.77663 1.19711 1.20990 1.20939 1.20377 0.92860 0.88604 1.51992 0.92127 1.19037 0.98557 0.93935 0.85743 1.20981 0.87367 0.96823 0.90726 1.45917 1.11377 1.59890 1.17607 1.20143 0.89777 0.78234 0.81976 1.90638 1.22588 1.55532 1.74003 1.20959 0.95554 0.95048 0.89440 0.88306 1.58604 1.16474 1.55668 1.04415 1.23082 0.91925 1.00019 1.05656 1.23017 0.98109 1.03137 0.96352 1.22936 1.02218 1.00735 0.95564 1.23015 0.98651 0.95623 1.07460 1.22494 0.92267 1.01089 1.02831 0.92865 0.90968 0.94637 0.76678 0.84609 0.83528 0.87573 0.88170 0.88548 0.88731 0.88703 0.91706 0.90367 0.89818 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.46 12.91 55.43 0.72 -23.75 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 8 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 9 C 0.03 0.66 1.38 -155.67 -0.21 0.44 16 10 C 0.16 3.77 5.50 -4.04 -0.02 3.75 16 11 N -0.70 -13.67 5.47 -60.29 -0.33 -14.00 16 12 C 0.51 9.77 7.06 -10.98 -0.08 9.69 16 13 O -0.55 -12.49 16.25 5.56 0.09 -12.40 16 14 C 0.11 1.47 3.36 -68.86 -0.23 1.24 16 15 H 0.10 1.30 7.90 -51.93 -0.41 0.89 16 16 N -0.82 -10.87 8.96 -5.65 -0.05 -10.92 16 17 C -0.19 -2.14 5.31 -90.61 -0.48 -2.62 16 18 C -0.17 -1.66 10.18 -26.69 -0.27 -1.93 16 19 C -0.18 -1.57 9.87 -26.69 -0.26 -1.83 16 20 C -0.21 -4.35 9.96 -26.70 -0.27 -4.61 16 21 C -0.15 -3.41 9.42 -26.70 -0.25 -3.66 16 22 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 23 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 24 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.40 7.14 8.37 -40.82 -0.34 6.79 16 26 H 0.34 3.43 8.30 -39.29 -0.33 3.10 16 27 H 0.35 4.73 8.58 -39.29 -0.34 4.40 16 28 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 29 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.75 7.74 -51.93 -0.40 0.35 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 308.79 15.07 4.65 4.65 Total: -1.00 -29.80 308.79 -8.00 -37.80 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -5.58 Total: 13.87 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.47 Total: -10.85 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.34 Total: -48.67 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.80 -8.00 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404171531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.053 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds