Wall clock time and date at job start Mon Mar 30 2020 03:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46780 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47093 * 299.99711 * 3 2 1 6 6 H 1.48497 * 109.47351 * 59.99892 * 3 2 1 7 7 C 1.37882 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99565 * 173.55253 * 7 2 1 9 9 C 1.50696 * 119.99954 * 353.55242 * 7 2 1 10 10 C 1.53005 * 115.55053 * 85.40975 * 9 7 2 11 11 N 1.46502 * 109.47347 * 65.13467 * 10 9 7 12 12 C 1.34770 * 119.99828 * 178.27498 * 11 10 9 13 13 O 1.21276 * 120.00621 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99575 * 180.02562 * 12 11 10 15 15 H 1.08997 * 109.47224 * 320.00339 * 14 12 11 16 16 N 1.46904 * 109.46978 * 199.99963 * 14 12 11 17 17 C 1.53001 * 109.46777 * 80.00344 * 14 12 11 18 18 C 1.52999 * 117.49720 * 248.74280 * 17 14 12 19 19 C 1.53010 * 117.49691 * 180.08577 * 17 14 12 20 20 C 1.52997 * 117.49737 * 231.07388 * 9 7 2 21 21 C 1.52992 * 117.50261 * 299.73308 * 9 7 2 22 22 H 0.97010 * 119.99636 * 5.05740 * 1 2 3 23 23 H 1.09005 * 109.46945 * 305.13954 * 10 9 7 24 24 H 1.08997 * 109.47392 * 185.14016 * 10 9 7 25 25 H 0.97004 * 119.99406 * 358.28019 * 11 10 9 26 26 H 1.00902 * 110.99760 * 176.04769 * 16 14 12 27 27 H 1.00900 * 111.00009 * 299.99964 * 16 14 12 28 28 H 1.08996 * 115.55309 * 34.41750 * 17 14 12 29 29 H 1.09001 * 117.49841 * 0.02562 * 18 17 14 30 30 H 1.08996 * 117.49977 * 145.02422 * 18 17 14 31 31 H 1.08998 * 117.49593 * 214.98178 * 19 17 14 32 32 H 1.08997 * 117.49364 * 359.97438 * 19 17 14 33 33 H 1.09003 * 117.49841 * 215.00918 * 20 9 7 34 34 H 1.09004 * 117.50161 * 0.02669 * 20 9 7 35 35 H 1.09005 * 117.49752 * 359.97438 * 21 9 7 36 36 H 1.09007 * 117.50268 * 144.97613 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0793 -1.1972 -0.1045 9 6 1.2580 -2.4950 0.1477 10 6 0.7019 -3.0870 -1.1490 11 7 1.8110 -3.4602 -2.0305 12 6 1.5597 -4.0376 -3.2220 13 8 0.4155 -4.2480 -3.5648 14 6 2.7006 -4.4220 -4.1286 15 1 3.4646 -3.6451 -4.1005 16 7 2.2047 -4.5717 -5.5033 17 6 3.3029 -5.7469 -3.6566 18 6 4.7119 -5.7101 -3.0615 19 6 4.4832 -6.3093 -4.4514 20 6 1.7469 -3.4728 1.2180 21 6 0.4417 -2.7005 1.4252 22 1 -0.4850 0.8369 -0.0741 23 1 0.0753 -2.3470 -1.6469 24 1 0.1073 -3.9711 -0.9191 25 1 2.7261 -3.2916 -1.7565 26 1 2.9616 -4.7661 -6.1415 27 1 1.4947 -5.2868 -5.5557 28 1 2.5960 -6.4601 -3.2328 29 1 5.2096 -4.7419 -3.0058 30 1 4.9321 -6.3994 -2.2464 31 1 4.5529 -7.3925 -4.5501 32 1 4.8302 -5.7355 -5.3107 33 1 1.6723 -4.5379 0.9985 34 1 2.6081 -3.1750 1.8161 35 1 0.4448 -1.8949 2.1595 36 1 -0.4919 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404171531.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:47 Heat of formation + Delta-G solvation = -16.789763 kcal Electronic energy + Delta-G solvation = -17138.638474 eV Core-core repulsion = 14430.000636 eV Total energy + Delta-G solvation = -2708.637838 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91389 -38.78780 -38.10414 -34.92744 -34.03828 -33.96441 -28.98238 -27.55936 -26.11671 -23.18055 -22.99680 -22.23896 -21.34080 -20.77097 -18.79184 -18.03942 -16.81308 -16.65718 -16.51352 -16.10999 -15.90559 -15.52046 -14.95292 -14.67651 -14.41448 -13.66841 -13.62856 -13.45090 -12.93676 -12.86595 -12.79139 -12.32897 -12.32428 -12.05019 -11.58597 -11.45220 -11.30364 -10.85865 -10.72909 -10.46447 -10.06272 -9.81759 -9.64362 -8.10230 -6.23548 1.41484 1.44858 1.54320 1.72168 2.31862 2.43257 2.81682 3.18253 3.46579 3.68091 3.77974 3.85110 4.05052 4.10210 4.24538 4.36590 4.54282 4.61819 4.65008 4.72329 4.79929 4.98736 5.02305 5.04093 5.15574 5.26359 5.26890 5.57917 5.60339 5.68757 5.78341 6.07090 6.36356 6.59073 6.79244 6.85633 7.40842 7.46470 8.97723 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.006568 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.729159 B = 4262.378401 C = 4427.478206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.005 3.995 10 C 0.180 3.820 11 N -0.694 5.694 12 C 0.508 3.492 13 O -0.593 6.593 14 C 0.119 3.881 15 H 0.112 0.888 16 N -0.832 5.832 17 C -0.203 4.203 18 C -0.167 4.167 19 C -0.154 4.154 20 C -0.173 4.173 21 C -0.162 4.162 22 H 0.258 0.742 23 H 0.025 0.975 24 H 0.033 0.967 25 H 0.410 0.590 26 H 0.360 0.640 27 H 0.348 0.652 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 -10.737 -6.065 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.004 3.996 10 C 0.056 3.944 11 N -0.343 5.343 12 C 0.295 3.705 13 O -0.473 6.473 14 C 0.004 3.996 15 H 0.130 0.870 16 N -0.364 5.364 17 C -0.223 4.223 18 C -0.204 4.204 19 C -0.191 4.191 20 C -0.210 4.210 21 C -0.200 4.200 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.245 0.755 26 H 0.176 0.824 27 H 0.162 0.838 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.893 -9.981 -6.173 15.349 hybrid contribution 0.350 0.285 0.413 0.612 sum 10.243 -9.696 -5.760 15.235 Atomic orbital electron populations 1.70123 1.07393 1.27284 1.49963 1.25739 0.95451 1.02222 0.94373 0.85625 0.79615 0.80012 0.77111 1.18260 1.21467 1.21074 1.20711 0.93224 0.89506 1.50692 0.91577 1.19058 0.99695 0.94580 0.86234 1.20527 0.87883 0.95260 0.90743 1.45803 1.10928 1.59904 1.17700 1.21127 0.90682 0.76811 0.81899 1.90612 1.24868 1.57043 1.74820 1.20801 0.93356 0.96788 0.88669 0.86990 1.58560 1.17431 1.55952 1.04495 1.22831 0.92618 0.98583 1.08311 1.23136 0.96132 1.03808 0.97337 1.23055 0.98834 1.01681 0.95518 1.22998 0.97297 0.96191 1.04554 1.22438 0.93804 1.01476 1.02273 0.93248 0.95611 0.94911 0.75482 0.82383 0.83822 0.89120 0.87540 0.87933 0.87444 0.87218 0.89359 0.89354 0.91779 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.17 12.91 21.45 0.28 -51.89 16 2 C 0.02 1.21 5.39 84.66 0.46 1.67 16 3 Si 0.95 42.32 29.55 68.60 2.03 44.35 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.50 -25.70 8.63 25.60 0.22 -25.48 16 8 H 0.07 3.23 7.82 -2.91 -0.02 3.21 16 9 C 0.01 0.24 1.38 -52.93 -0.07 0.16 16 10 C 0.18 8.45 5.50 86.38 0.48 8.92 16 11 N -0.69 -26.96 5.47 -463.05 -2.54 -29.49 16 12 C 0.51 19.23 7.06 87.66 0.62 19.85 16 13 O -0.59 -27.53 16.25 -3.02 -0.05 -27.58 16 14 C 0.12 3.14 3.36 44.17 0.15 3.29 16 15 H 0.11 2.67 7.90 -2.39 -0.02 2.65 16 16 N -0.83 -20.77 8.96 -171.79 -1.54 -22.31 16 17 C -0.20 -4.23 5.31 -10.79 -0.06 -4.28 16 18 C -0.17 -2.74 10.18 30.62 0.31 -2.43 16 19 C -0.15 -2.18 9.87 30.62 0.30 -1.87 16 20 C -0.17 -6.83 9.96 30.61 0.30 -6.53 16 21 C -0.16 -7.41 9.42 30.61 0.29 -7.13 16 22 H 0.26 14.29 8.32 -92.70 -0.77 13.52 16 23 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 25 H 0.41 14.11 8.37 -92.71 -0.78 13.33 16 26 H 0.36 6.35 8.30 -89.69 -0.74 5.60 16 27 H 0.35 9.12 8.58 -89.69 -0.77 8.35 16 28 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 29 H 0.11 1.64 8.05 -2.39 -0.02 1.62 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.26 7.74 -2.39 -0.02 1.24 16 33 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 36 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -65.07 308.79 -0.02 -65.09 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.19 Total: 35.67 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 3.00 Total: -13.83 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.80 Total: -103.70 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.07 -0.02 -65.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404171531.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.298 kcal (2) G-P(sol) polarization free energy of solvation -65.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds