Wall clock time and date at job start Mon Mar 30 2020 03:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47399 * 54.99685 * 11 10 9 13 13 N 1.46904 * 109.46895 * 294.99864 * 11 10 9 14 14 C 1.50700 * 109.47297 * 175.00095 * 11 10 9 15 15 O 1.21281 * 119.99971 * 99.99581 * 14 11 10 16 16 N 1.34777 * 119.99895 * 279.99574 * 14 11 10 17 17 C 1.46499 * 119.99933 * 179.97438 * 16 14 11 18 18 H 1.08998 * 115.55315 * 350.67478 * 17 16 14 19 19 C 1.53007 * 117.49493 * 136.38336 * 17 16 14 20 20 C 1.52995 * 117.49817 * 205.00363 * 17 16 14 21 21 C 1.52988 * 138.59106 * 121.62021 * 20 17 16 22 22 C 1.52988 * 138.58979 * 23.40262 * 20 17 16 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 25 25 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 26 26 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 27 27 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 28 28 H 1.00905 * 110.99690 * 176.04596 * 13 11 10 29 29 H 1.00897 * 110.99892 * 299.99933 * 13 11 10 30 30 H 0.97007 * 119.99888 * 0.02562 * 16 14 11 31 31 H 1.09003 * 117.49406 * 214.97927 * 19 17 16 32 32 H 1.08994 * 117.50042 * 0.02562 * 19 17 16 33 33 H 1.08998 * 117.50008 * 336.59892 * 21 20 17 34 34 H 1.09003 * 117.50218 * 121.61231 * 21 20 17 35 35 H 1.09007 * 117.50417 * 238.38159 * 22 20 17 36 36 H 1.09007 * 117.50238 * 23.40733 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 1 0.7893 -5.0072 -0.8413 13 7 0.7274 -5.1183 1.2557 14 6 2.4553 -6.1298 -0.1214 15 8 2.7861 -6.7531 0.8650 16 7 2.9595 -6.4591 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 1 4.2763 -7.9760 -0.5044 19 6 3.7102 -8.5453 -2.6082 20 6 4.8724 -7.5504 -2.6333 21 6 6.3813 -7.5549 -2.8857 22 6 5.4904 -6.5321 -3.5933 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6248 -2.5571 -0.8896 26 1 2.8727 -3.6046 -0.8877 27 1 2.8714 -3.6038 0.8922 28 1 0.1630 -5.9547 1.2528 29 1 1.3464 -5.1024 2.0523 30 1 2.6951 -5.9602 -2.1160 31 1 3.9491 -9.5939 -2.4308 32 1 2.8755 -8.3606 -3.2842 33 1 7.0265 -7.1922 -2.0855 34 1 6.7888 -8.3683 -3.4861 35 1 5.3118 -6.6725 -4.6595 36 1 5.5495 -5.4963 -3.2588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715571804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:48 Heat of formation + Delta-G solvation = 2.215516 kcal Electronic energy + Delta-G solvation = -16545.749488 eV Core-core repulsion = 13837.935781 eV Total energy + Delta-G solvation = -2707.813708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00700 -38.28186 -35.37432 -34.32564 -33.06031 -31.47528 -29.96401 -26.25791 -23.76967 -22.68994 -22.03998 -20.88003 -20.04517 -19.53954 -17.32377 -16.60143 -16.28858 -15.73581 -15.24978 -14.78797 -14.54552 -14.30826 -13.68493 -13.59817 -12.81511 -12.73128 -12.16523 -12.15200 -11.76049 -11.55415 -10.98473 -10.81995 -10.73324 -10.46680 -10.26457 -10.18986 -10.09260 -9.96634 -9.70159 -8.84885 -8.53318 -8.37154 -8.22243 -6.28940 -3.97468 2.57997 2.93454 3.47048 3.50373 3.55238 3.62687 3.65936 4.05019 4.55830 4.59227 4.70212 4.75551 4.96342 5.20088 5.37503 5.39641 5.40823 5.41753 5.49035 5.50062 5.63947 5.70578 5.72779 5.89835 6.29709 6.41409 6.51666 6.92365 7.26668 7.48990 7.52738 7.68635 7.73092 8.21370 8.29132 8.54938 8.96686 9.74606 11.12212 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.005114 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.650865 B = 5473.897385 C = 6282.835588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.604 4.604 8 H 0.045 0.955 9 C 0.018 3.982 10 C -0.088 4.088 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.808 5.808 14 C 0.488 3.512 15 O -0.552 6.552 16 N -0.701 5.701 17 C 0.132 3.868 18 H 0.135 0.865 19 C -0.139 4.139 20 C -0.248 4.248 21 C -0.125 4.125 22 C -0.126 4.126 23 H 0.271 0.729 24 H 0.027 0.973 25 H 0.004 0.996 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.335 0.665 29 H 0.349 0.651 30 H 0.405 0.595 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.072 -16.056 -6.814 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.643 4.643 8 H 0.064 0.936 9 C -0.019 4.019 10 C -0.126 4.126 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.336 5.336 14 C 0.274 3.726 15 O -0.429 6.429 16 N -0.351 5.351 17 C 0.026 3.974 18 H 0.153 0.847 19 C -0.178 4.178 20 C -0.249 4.249 21 C -0.162 4.162 22 C -0.163 4.163 23 H 0.081 0.919 24 H 0.045 0.955 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.240 0.760 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.728 -14.136 -6.270 17.287 hybrid contribution 0.753 -2.457 -0.391 2.600 sum 8.481 -16.593 -6.661 19.790 Atomic orbital electron populations 1.70729 1.06853 1.30784 1.46716 1.25782 0.96578 1.02547 0.93947 0.83541 0.74608 0.75294 0.76717 1.21510 1.21645 1.21054 1.22106 0.94150 0.92298 1.55715 0.93633 1.19138 0.94217 0.91642 0.96906 1.21518 0.98562 0.91605 1.00931 1.21855 0.93533 0.93252 0.95170 0.88428 1.59015 1.26928 1.44368 1.03284 1.22757 0.81980 0.85487 0.82371 1.90642 1.61031 1.54221 1.37002 1.45612 1.45185 1.33756 1.10542 1.21340 0.91789 0.90416 0.93884 0.84702 1.23236 0.97310 0.95972 1.01248 1.22055 0.94055 1.05206 1.03612 1.22641 0.89797 1.01350 1.02398 1.22656 1.01265 0.95411 0.97004 0.91879 0.95519 0.97813 0.92682 0.92646 0.85302 0.83708 0.76029 0.87953 0.88308 0.88493 0.88494 0.88481 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.65 55.43 0.76 -27.58 16 2 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.66 29.90 -169.99 -5.08 20.58 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.60 -17.36 9.11 -34.44 -0.31 -17.68 16 8 H 0.05 1.29 7.74 -52.49 -0.41 0.89 16 9 C 0.02 0.46 4.17 -27.88 -0.12 0.34 16 10 C -0.09 -1.79 4.78 -26.73 -0.13 -1.92 16 11 C 0.08 1.30 3.15 -68.87 -0.22 1.09 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.81 -13.55 8.44 -5.66 -0.05 -13.60 16 14 C 0.49 7.75 7.07 -10.99 -0.08 7.68 16 15 O -0.55 -10.22 15.82 5.56 0.09 -10.13 16 16 N -0.70 -9.10 5.57 -53.81 -0.30 -9.40 16 17 C 0.13 1.58 6.43 -67.93 -0.44 1.14 16 18 H 0.14 1.80 7.40 -51.93 -0.38 1.41 16 19 C -0.14 -1.30 10.46 -26.73 -0.28 -1.58 16 20 C -0.25 -2.53 5.60 -154.52 -0.86 -3.39 16 21 C -0.12 -1.10 10.53 -26.74 -0.28 -1.38 16 22 C -0.13 -1.17 10.53 -26.74 -0.28 -1.45 16 23 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 24 H 0.03 0.73 7.62 -51.93 -0.40 0.33 16 25 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.34 4.85 9.06 -39.29 -0.36 4.49 16 29 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 30 H 0.40 4.61 8.83 -40.82 -0.36 4.25 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -32.83 309.72 -8.56 -41.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.55 Total: 10.90 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -3.09 Total: -16.81 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.41 Total: -50.59 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.83 -8.56 -41.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715571804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.606 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds