Wall clock time and date at job start Mon Mar 30 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47399 * 54.99685 * 11 10 9 13 13 N 1.46904 * 109.46895 * 294.99864 * 11 10 9 14 14 C 1.50700 * 109.47297 * 175.00095 * 11 10 9 15 15 O 1.21281 * 119.99971 * 99.99581 * 14 11 10 16 16 N 1.34777 * 119.99895 * 279.99574 * 14 11 10 17 17 C 1.46499 * 119.99933 * 179.97438 * 16 14 11 18 18 H 1.08998 * 115.55315 * 350.67478 * 17 16 14 19 19 C 1.53007 * 117.49493 * 136.38336 * 17 16 14 20 20 C 1.52995 * 117.49817 * 205.00363 * 17 16 14 21 21 C 1.52988 * 138.59106 * 121.62021 * 20 17 16 22 22 C 1.52988 * 138.58979 * 23.40262 * 20 17 16 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 25 25 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 26 26 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 27 27 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 28 28 H 1.00905 * 110.99690 * 176.04596 * 13 11 10 29 29 H 1.00897 * 110.99892 * 299.99933 * 13 11 10 30 30 H 0.97007 * 119.99888 * 0.02562 * 16 14 11 31 31 H 1.09003 * 117.49406 * 214.97927 * 19 17 16 32 32 H 1.08994 * 117.50042 * 0.02562 * 19 17 16 33 33 H 1.08998 * 117.50008 * 336.59892 * 21 20 17 34 34 H 1.09003 * 117.50218 * 121.61231 * 21 20 17 35 35 H 1.09007 * 117.50417 * 238.38159 * 22 20 17 36 36 H 1.09007 * 117.50238 * 23.40733 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 1 0.7893 -5.0072 -0.8413 13 7 0.7274 -5.1183 1.2557 14 6 2.4553 -6.1298 -0.1214 15 8 2.7861 -6.7531 0.8650 16 7 2.9595 -6.4591 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 1 4.2763 -7.9760 -0.5044 19 6 3.7102 -8.5453 -2.6082 20 6 4.8724 -7.5504 -2.6333 21 6 6.3813 -7.5549 -2.8857 22 6 5.4904 -6.5321 -3.5933 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6248 -2.5571 -0.8896 26 1 2.8727 -3.6046 -0.8877 27 1 2.8714 -3.6038 0.8922 28 1 0.1630 -5.9547 1.2528 29 1 1.3464 -5.1024 2.0523 30 1 2.6951 -5.9602 -2.1160 31 1 3.9491 -9.5939 -2.4308 32 1 2.8755 -8.3606 -3.2842 33 1 7.0265 -7.1922 -2.0855 34 1 6.7888 -8.3683 -3.4861 35 1 5.3118 -6.6725 -4.6595 36 1 5.5495 -5.4963 -3.2588 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715571804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:47 Heat of formation + Delta-G solvation = -21.120078 kcal Electronic energy + Delta-G solvation = -16546.761395 eV Core-core repulsion = 13837.935781 eV Total energy + Delta-G solvation = -2708.825615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21563 -39.19552 -37.01123 -35.33239 -35.06092 -32.39868 -31.78684 -27.93610 -25.58337 -23.39215 -23.37273 -22.34040 -21.34597 -20.41166 -19.00439 -18.20871 -17.52427 -17.11296 -15.97338 -15.93524 -15.71310 -15.61069 -15.47698 -15.11311 -14.79112 -13.94881 -13.60301 -13.49555 -13.05834 -12.66590 -12.42918 -12.39442 -12.04873 -11.90289 -11.85798 -11.81685 -11.40353 -11.13383 -10.95915 -10.61803 -10.48164 -9.84901 -9.74141 -8.62807 -6.32636 1.32921 1.54116 1.63175 1.80609 1.90499 2.59754 2.73290 2.82808 3.21990 3.25143 3.44698 3.67998 3.77124 3.96687 3.98661 4.17428 4.42312 4.54012 4.60746 4.71203 4.71493 4.75624 4.79056 4.89108 4.95891 5.05850 5.21898 5.38402 5.43230 5.61430 5.97613 6.05438 6.26133 6.34289 6.43882 6.65616 7.02549 7.48691 8.78450 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.005114 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.650865 B = 5473.897385 C = 6282.835588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.038 4.038 3 Si 1.118 2.882 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.621 4.621 8 H 0.045 0.955 9 C 0.023 3.977 10 C -0.075 4.075 11 C 0.087 3.913 12 H 0.113 0.887 13 N -0.819 5.819 14 C 0.493 3.507 15 O -0.581 6.581 16 N -0.687 5.687 17 C 0.102 3.898 18 H 0.116 0.884 19 C -0.117 4.117 20 C -0.256 4.256 21 C -0.119 4.119 22 C -0.126 4.126 23 H 0.257 0.743 24 H 0.003 0.997 25 H -0.008 1.008 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.349 0.651 29 H 0.346 0.654 30 H 0.414 0.586 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -16.670 -8.215 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.939 3.061 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.659 4.659 8 H 0.064 0.936 9 C -0.014 4.014 10 C -0.113 4.113 11 C -0.029 4.029 12 H 0.131 0.869 13 N -0.348 5.348 14 C 0.278 3.722 15 O -0.461 6.461 16 N -0.336 5.336 17 C -0.004 4.004 18 H 0.134 0.866 19 C -0.155 4.155 20 C -0.257 4.257 21 C -0.156 4.156 22 C -0.163 4.163 23 H 0.067 0.933 24 H 0.022 0.978 25 H 0.010 0.990 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.250 0.750 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.962 -14.788 -7.708 18.932 hybrid contribution 0.391 -2.315 0.021 2.348 sum 9.353 -17.103 -7.686 20.954 Atomic orbital electron populations 1.70869 1.07893 1.30039 1.48814 1.27335 0.96634 1.06640 0.92911 0.82932 0.74220 0.71299 0.77635 1.20159 1.19427 1.20709 1.22557 0.94470 0.93861 1.55047 0.93636 1.18996 0.94565 0.92730 0.95089 1.21258 0.97479 0.91841 1.00740 1.21632 0.93697 0.91814 0.95778 0.86948 1.58993 1.27160 1.45427 1.03189 1.22368 0.81792 0.85130 0.82870 1.90632 1.62021 1.55269 1.38141 1.45466 1.44525 1.33813 1.09840 1.21398 0.93269 0.91420 0.94308 0.86575 1.23286 0.97037 0.96223 0.98918 1.22159 0.95143 1.05977 1.02445 1.22775 0.88906 1.01642 1.02264 1.22740 1.01039 0.94822 0.97731 0.93311 0.97848 0.98969 0.91636 0.94018 0.83772 0.84081 0.74978 0.86409 0.87236 0.88836 0.86498 0.86831 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.65 21.45 0.29 -58.56 16 2 C -0.04 -2.21 5.46 84.65 0.46 -1.75 16 3 Si 1.12 50.91 29.90 68.60 2.05 52.97 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.62 -35.85 9.11 25.60 0.23 -35.62 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.02 1.21 4.17 29.85 0.12 1.33 16 10 C -0.07 -3.05 4.78 30.59 0.15 -2.90 16 11 C 0.09 2.86 3.15 44.17 0.14 3.00 16 12 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 13 N -0.82 -27.50 8.44 -171.81 -1.45 -28.95 16 14 C 0.49 15.38 7.07 87.66 0.62 15.99 16 15 O -0.58 -21.50 15.82 -3.03 -0.05 -21.55 16 16 N -0.69 -17.04 5.57 -442.53 -2.46 -19.50 16 17 C 0.10 2.31 6.43 44.99 0.29 2.60 16 18 H 0.12 3.09 7.40 -2.39 -0.02 3.07 16 19 C -0.12 -1.88 10.46 30.60 0.32 -1.56 16 20 C -0.26 -4.67 5.60 -52.19 -0.29 -4.96 16 21 C -0.12 -1.82 10.53 30.59 0.32 -1.49 16 22 C -0.13 -2.06 10.53 30.59 0.32 -1.74 16 23 H 0.26 16.35 7.22 -92.70 -0.67 15.68 16 24 H 0.00 0.18 7.62 -2.39 -0.02 0.16 16 25 H -0.01 -0.43 8.01 -2.39 -0.02 -0.45 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.35 9.96 9.06 -89.69 -0.81 9.15 16 29 H 0.35 12.00 8.58 -89.70 -0.77 11.24 16 30 H 0.41 8.72 8.83 -92.70 -0.82 7.90 16 31 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -70.43 309.72 -0.13 -70.56 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -1.20 Total: 32.13 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 2.69 Total: -27.09 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.62 Total: -107.02 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.97 kcal Total: -70.43 -0.13 -70.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715571804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.440 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds