Wall clock time and date at job start Mon Mar 30 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28408 * 125.16181 * 2 1 4 4 C 1.30679 * 111.24091 * 180.30657 * 3 2 1 5 5 C 1.40454 * 107.92689 * 359.71419 * 4 3 2 6 6 N 1.39348 * 127.41879 * 179.97438 * 5 4 3 7 7 C 1.37331 * 125.16828 * 179.81835 * 2 1 3 8 8 C 1.46449 * 126.99725 * 359.97325 * 7 2 1 9 9 O 1.21717 * 120.00116 * 99.63940 * 8 7 2 10 10 N 1.34778 * 119.99953 * 279.64641 * 8 7 2 11 11 C 1.46500 * 120.00085 * 174.80251 * 10 8 7 12 12 C 1.52993 * 109.47242 * 180.26954 * 11 10 8 13 13 C 1.50701 * 109.47215 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00017 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99735 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00523 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99663 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47040 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47199 * 209.99734 * 17 15 13 20 20 H 1.48493 * 109.47180 * 329.99992 * 17 15 13 21 21 H 1.09005 * 109.47104 * 275.16960 * 1 2 3 22 22 H 1.08993 * 109.47471 * 35.17451 * 1 2 3 23 23 H 1.09004 * 109.47195 * 155.17574 * 1 2 3 24 24 H 1.08001 * 126.03775 * 179.74668 * 4 3 2 25 25 H 0.97004 * 119.99395 * 180.02562 * 6 5 4 26 26 H 0.96995 * 120.00310 * 0.02567 * 6 5 4 27 27 H 0.97000 * 119.99666 * 355.07260 * 10 8 7 28 28 H 1.09001 * 109.47024 * 300.27205 * 11 10 8 29 29 H 1.09000 * 109.46857 * 60.27264 * 11 10 8 30 30 H 1.09001 * 109.47316 * 300.00072 * 12 11 10 31 31 H 1.09006 * 109.47192 * 59.99989 * 12 11 10 32 32 H 0.96999 * 120.00277 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2045 1.0498 0.0000 4 6 3.4729 0.7354 -0.0065 5 6 3.5710 -0.6657 -0.0046 6 7 4.7342 -1.4330 -0.0102 7 6 2.2560 -1.1226 0.0036 8 6 1.8074 -2.5167 0.0085 9 8 1.7887 -3.1537 -1.0285 10 7 1.4153 -3.0944 1.1614 11 6 0.8597 -4.4499 1.1496 12 6 0.4913 -4.8625 2.5760 13 6 -0.0808 -6.2566 2.5638 14 1 -0.1721 -6.7947 1.6320 15 6 -0.4877 -6.8451 3.7425 16 7 -0.3761 -6.1901 4.8774 17 14 -1.1962 -8.5735 3.7274 18 1 -0.0997 -9.5595 3.9031 19 1 -2.1737 -8.7175 4.8361 20 1 -1.8783 -8.8176 2.4312 21 1 -0.3633 0.0926 1.0235 22 1 -0.3634 0.8399 -0.5920 23 1 -0.3634 -0.9327 -0.4315 24 1 4.2997 1.4302 -0.0119 25 1 4.6763 -2.4014 -0.0085 26 1 5.6016 -0.9990 -0.0158 27 1 1.4973 -2.6111 1.9984 28 1 -0.0321 -4.4716 0.5233 29 1 1.6007 -5.1428 0.7509 30 1 1.3831 -4.8408 3.2024 31 1 -0.2497 -4.1695 2.9748 32 1 -0.6620 -6.6043 5.7066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725162325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:09 Heat of formation + Delta-G solvation = 32.853234 kcal Electronic energy + Delta-G solvation = -16416.040402 eV Core-core repulsion = 13606.014902 eV Total energy + Delta-G solvation = -2810.025500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.24993 -38.93315 -35.12538 -34.88039 -32.93752 -32.47099 -30.18641 -28.88252 -26.65705 -25.04208 -22.66858 -21.29584 -20.96963 -19.82772 -17.83348 -16.76930 -16.47676 -16.07100 -15.89653 -15.12967 -14.85321 -14.56084 -14.24343 -13.90385 -13.10832 -13.01288 -12.81857 -12.62502 -12.34055 -11.27003 -11.09107 -11.08001 -10.74909 -10.68348 -10.39594 -10.02236 -9.59096 -9.29551 -9.04176 -8.63432 -8.42622 -7.39585 -6.13355 -4.16743 1.85289 2.30204 2.84434 3.00811 3.26772 3.33175 3.36755 3.68124 3.96230 4.38469 4.65857 4.96132 5.10195 5.15009 5.23791 5.37170 5.44036 5.59346 6.22837 6.25698 6.31599 6.64339 6.77361 6.86312 7.45717 7.49172 7.55043 7.77369 7.83951 7.89085 8.18707 8.21757 8.48959 8.89177 9.48509 10.98143 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.004755 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.725435 B = 5886.608810 C = 6048.410751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.271 5.271 3 N -0.262 5.262 4 C -0.049 4.049 5 C 0.140 3.860 6 N -0.856 5.856 7 C -0.115 4.115 8 C 0.588 3.412 9 O -0.537 6.537 10 N -0.709 5.709 11 C 0.120 3.880 12 C 0.013 3.987 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.182 0.818 25 H 0.401 0.599 26 H 0.402 0.598 27 H 0.400 0.600 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.858 12.506 -6.800 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.064 5.064 3 N -0.094 5.094 4 C -0.230 4.230 5 C 0.028 3.972 6 N -0.400 5.400 7 C -0.246 4.246 8 C 0.371 3.629 9 O -0.413 6.413 10 N -0.358 5.358 11 C -0.002 4.002 12 C -0.025 4.025 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 H 0.104 0.896 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.199 0.801 25 H 0.230 0.770 26 H 0.230 0.770 27 H 0.234 0.766 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.826 12.927 -7.354 15.636 hybrid contribution 0.500 -1.560 0.575 1.736 sum 5.326 11.368 -6.779 14.267 Atomic orbital electron populations 1.22103 0.73033 1.05115 1.04466 1.45076 1.06890 1.01279 1.53167 1.72799 1.03563 1.14263 1.18781 1.23080 0.93746 0.92526 1.13693 1.17933 0.86098 0.91249 1.01963 1.41243 1.03885 1.08058 1.86796 1.20581 0.90468 0.89090 1.24414 1.16848 0.77744 0.84080 0.84252 1.90825 1.53586 1.64469 1.32385 1.46430 1.62109 1.18588 1.08706 1.21816 0.97149 0.79506 1.01737 1.19327 0.97230 0.97062 0.88849 1.21032 1.41832 0.99577 0.93715 0.92210 1.24993 0.95641 0.98124 0.95447 1.69952 1.47484 1.37592 0.98202 0.86510 0.78953 0.84291 0.77798 1.20530 1.21149 1.19709 0.89625 0.88723 0.88948 0.80118 0.77042 0.76985 0.76598 0.92369 0.92222 0.95869 0.95916 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.22 59.85 0.67 1.66 16 2 N -0.27 -3.79 3.77 -63.71 -0.24 -4.03 16 3 N -0.26 -3.64 11.87 30.72 0.36 -3.28 16 4 C -0.05 -0.62 12.05 -17.21 -0.21 -0.83 16 5 C 0.14 1.93 7.48 -83.25 -0.62 1.30 16 6 N -0.86 -9.49 9.12 32.71 0.30 -9.19 16 7 C -0.12 -1.79 6.73 -81.73 -0.55 -2.34 16 8 C 0.59 10.39 6.90 -12.95 -0.09 10.30 16 9 O -0.54 -11.30 17.12 5.17 0.09 -11.21 16 10 N -0.71 -12.33 5.55 -61.69 -0.34 -12.68 16 11 C 0.12 2.47 5.62 -4.05 -0.02 2.44 16 12 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 13 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.09 1.02 7.67 -51.93 -0.40 0.62 16 24 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.40 4.69 8.86 -40.82 -0.36 4.32 16 26 H 0.40 3.18 8.96 -40.82 -0.37 2.81 16 27 H 0.40 6.38 8.46 -40.82 -0.35 6.03 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 288.13 15.07 4.34 4.34 Total: -1.00 -32.68 288.13 -5.12 -37.80 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.97 Total: 7.49 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.37 Total: -0.25 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.82 Total: -54.19 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.68 -5.12 -37.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725162325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.655 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds