Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28408 * 125.16181 * 2 1 4 4 C 1.30679 * 111.24091 * 180.30657 * 3 2 1 5 5 C 1.40454 * 107.92689 * 359.71419 * 4 3 2 6 6 N 1.39348 * 127.41879 * 179.97438 * 5 4 3 7 7 C 1.37331 * 125.16828 * 179.81835 * 2 1 3 8 8 C 1.46449 * 126.99725 * 359.97325 * 7 2 1 9 9 O 1.21717 * 120.00116 * 99.63940 * 8 7 2 10 10 N 1.34778 * 119.99953 * 279.64641 * 8 7 2 11 11 C 1.46500 * 120.00085 * 174.80251 * 10 8 7 12 12 C 1.52993 * 109.47242 * 180.26954 * 11 10 8 13 13 C 1.50701 * 109.47215 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00017 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99735 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00523 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99663 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47040 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47199 * 209.99734 * 17 15 13 20 20 H 1.48493 * 109.47180 * 329.99992 * 17 15 13 21 21 H 1.09005 * 109.47104 * 275.16960 * 1 2 3 22 22 H 1.08993 * 109.47471 * 35.17451 * 1 2 3 23 23 H 1.09004 * 109.47195 * 155.17574 * 1 2 3 24 24 H 1.08001 * 126.03775 * 179.74668 * 4 3 2 25 25 H 0.97004 * 119.99395 * 180.02562 * 6 5 4 26 26 H 0.96995 * 120.00310 * 0.02567 * 6 5 4 27 27 H 0.97000 * 119.99666 * 355.07260 * 10 8 7 28 28 H 1.09001 * 109.47024 * 300.27205 * 11 10 8 29 29 H 1.09000 * 109.46857 * 60.27264 * 11 10 8 30 30 H 1.09001 * 109.47316 * 300.00072 * 12 11 10 31 31 H 1.09006 * 109.47192 * 59.99989 * 12 11 10 32 32 H 0.96999 * 120.00277 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2045 1.0498 0.0000 4 6 3.4729 0.7354 -0.0065 5 6 3.5710 -0.6657 -0.0046 6 7 4.7342 -1.4330 -0.0102 7 6 2.2560 -1.1226 0.0036 8 6 1.8074 -2.5167 0.0085 9 8 1.7887 -3.1537 -1.0285 10 7 1.4153 -3.0944 1.1614 11 6 0.8597 -4.4499 1.1496 12 6 0.4913 -4.8625 2.5760 13 6 -0.0808 -6.2566 2.5638 14 1 -0.1721 -6.7947 1.6320 15 6 -0.4877 -6.8451 3.7425 16 7 -0.3761 -6.1901 4.8774 17 14 -1.1962 -8.5735 3.7274 18 1 -0.0997 -9.5595 3.9031 19 1 -2.1737 -8.7175 4.8361 20 1 -1.8783 -8.8176 2.4312 21 1 -0.3633 0.0926 1.0235 22 1 -0.3634 0.8399 -0.5920 23 1 -0.3634 -0.9327 -0.4315 24 1 4.2997 1.4302 -0.0119 25 1 4.6763 -2.4014 -0.0085 26 1 5.6016 -0.9990 -0.0158 27 1 1.4973 -2.6111 1.9984 28 1 -0.0321 -4.4716 0.5233 29 1 1.6007 -5.1428 0.7509 30 1 1.3831 -4.8408 3.2024 31 1 -0.2497 -4.1695 2.9748 32 1 -0.6620 -6.6043 5.7066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725162325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = 7.454885 kcal Electronic energy + Delta-G solvation = -16417.141757 eV Core-core repulsion = 13606.014902 eV Total energy + Delta-G solvation = -2811.126855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.28877 -40.41233 -36.65069 -36.04568 -34.84827 -33.50487 -31.81851 -30.21672 -27.56599 -26.89318 -24.15220 -22.71086 -22.28369 -21.10237 -19.08928 -18.49363 -17.75289 -17.30379 -16.96349 -16.51048 -16.49331 -16.24114 -15.53308 -15.13832 -14.65949 -14.32775 -14.02038 -13.87921 -13.56876 -13.24272 -12.94930 -12.54792 -12.27422 -12.04531 -11.84255 -11.70248 -11.49885 -11.13292 -10.61130 -10.14416 -10.08203 -8.39266 -8.24042 -6.34756 0.73636 1.13254 1.42908 1.43011 1.54416 1.80063 1.84554 2.27346 2.45664 3.04362 3.11125 3.69120 3.74797 4.19912 4.32814 4.41546 4.46198 4.52094 4.58939 4.61586 4.82808 5.17797 5.36125 5.45200 5.56114 5.77093 5.86634 6.14379 6.45122 6.50578 6.78546 6.95340 7.06477 7.18767 7.34958 8.87674 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.004755 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.725435 B = 5886.608810 C = 6048.410751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.275 5.275 3 N -0.267 5.267 4 C -0.047 4.047 5 C 0.142 3.858 6 N -0.846 5.846 7 C -0.150 4.150 8 C 0.600 3.400 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.139 3.861 12 C 0.023 3.977 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.008 3.992 16 N -0.927 5.927 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.265 1.265 21 H 0.098 0.902 22 H 0.116 0.884 23 H 0.083 0.917 24 H 0.217 0.783 25 H 0.399 0.601 26 H 0.417 0.583 27 H 0.409 0.591 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.276 13.015 -7.089 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.070 5.070 3 N -0.100 5.100 4 C -0.228 4.228 5 C 0.028 3.972 6 N -0.391 5.391 7 C -0.279 4.279 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.350 5.350 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.584 4.584 14 H 0.079 0.921 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.189 1.189 21 H 0.117 0.883 22 H 0.134 0.866 23 H 0.101 0.899 24 H 0.233 0.767 25 H 0.226 0.774 26 H 0.249 0.751 27 H 0.244 0.756 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.028 0.972 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.267 13.457 -7.637 16.345 hybrid contribution 0.426 -1.652 0.665 1.832 sum 5.693 11.804 -6.972 14.844 Atomic orbital electron populations 1.22329 0.71722 1.05602 1.05728 1.45303 1.07714 1.00654 1.53282 1.72791 1.04283 1.14255 1.18661 1.23657 0.94190 0.92435 1.12522 1.18208 0.86078 0.92096 1.00854 1.41290 1.04087 1.07909 1.85777 1.20334 0.91713 0.88296 1.27583 1.17009 0.76438 0.84798 0.83254 1.90800 1.55135 1.65705 1.33548 1.46220 1.61911 1.17440 1.09419 1.21356 0.96882 0.80986 0.99151 1.19134 0.95889 0.95904 0.90538 1.21454 1.42035 1.00929 0.93959 0.92086 1.25853 0.95915 1.02226 0.95042 1.70058 1.48389 1.39398 0.98833 0.85457 0.78320 0.79286 0.78067 1.19852 1.20652 1.18930 0.88309 0.86553 0.89860 0.76666 0.77354 0.75095 0.75592 0.92742 0.92952 0.97475 0.97219 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 11.22 127.77 1.43 3.17 16 2 N -0.28 -7.37 3.77 -355.48 -1.34 -8.71 16 3 N -0.27 -6.91 11.87 -56.72 -0.67 -7.58 16 4 C -0.05 -1.05 12.05 85.40 1.03 -0.02 16 5 C 0.14 3.65 7.48 38.72 0.29 3.94 16 6 N -0.85 -17.26 9.12 -50.43 -0.46 -17.72 16 7 C -0.15 -4.53 6.73 40.66 0.27 -4.26 16 8 C 0.60 21.14 6.90 86.38 0.60 21.74 16 9 O -0.57 -24.29 17.12 -4.40 -0.08 -24.36 16 10 N -0.70 -24.42 5.55 -467.31 -2.59 -27.01 16 11 C 0.14 5.79 5.62 86.38 0.49 6.27 16 12 C 0.02 1.12 5.09 29.85 0.15 1.27 16 13 C -0.55 -29.74 9.11 25.60 0.23 -29.51 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 17 Si 0.96 42.84 29.54 68.60 2.03 44.86 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.08 1.82 7.67 -2.38 -0.02 1.80 16 24 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 25 H 0.40 8.85 8.86 -92.71 -0.82 8.02 16 26 H 0.42 5.62 8.96 -92.71 -0.83 4.79 16 27 H 0.41 13.01 8.46 -92.71 -0.78 12.22 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -68.91 288.13 0.86 -68.05 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -1.27 Total: 22.34 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 4.96 Total: 3.54 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.78 Total: -114.43 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.08 Total: -24.36 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.91 0.86 -68.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725162325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.506 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds