Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99926 * 2 1 4 4 N 1.46504 * 109.46867 * 125.00387 * 3 2 1 5 5 C 1.47255 * 120.07489 * 269.97150 * 4 3 2 6 6 C 1.53113 * 108.39457 * 110.04139 * 5 4 3 7 7 C 1.51689 * 110.75611 * 85.59551 * 6 5 4 8 8 N 1.45756 * 113.93677 * 293.21741 * 7 6 5 9 9 C 1.46893 * 111.00238 * 302.70386 * 8 7 6 10 10 C 1.46882 * 112.42860 * 67.71676 * 8 7 6 11 11 H 1.09002 * 109.59786 * 154.46383 * 10 8 7 12 12 C 1.50692 * 109.60509 * 33.98042 * 10 8 7 13 13 H 1.08000 * 120.00158 * 6.16154 * 12 10 8 14 14 C 1.37883 * 120.00208 * 186.15567 * 12 10 8 15 15 N 1.31516 * 120.00143 * 180.02562 * 14 12 10 16 16 Si 1.86799 * 119.99851 * 0.02562 * 14 12 10 17 17 H 1.48494 * 109.46972 * 89.99818 * 16 14 12 18 18 H 1.48497 * 109.46958 * 209.99906 * 16 14 12 19 19 H 1.48500 * 109.47139 * 329.99999 * 16 14 12 20 20 C 1.33603 * 120.07985 * 89.99910 * 4 3 2 21 21 O 1.21285 * 119.88290 * 359.72516 * 20 4 3 22 22 H 1.08001 * 119.99926 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.99830 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.00101 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47029 * 5.00519 * 3 2 1 26 26 H 1.08999 * 109.46981 * 245.00053 * 3 2 1 27 27 H 1.08997 * 109.67818 * 350.31509 * 5 4 3 28 28 H 1.08995 * 109.70893 * 229.78128 * 5 4 3 29 29 H 1.08992 * 109.22130 * 325.26411 * 6 5 4 30 30 H 1.08998 * 109.18332 * 205.89679 * 6 5 4 31 31 H 1.09001 * 108.58752 * 172.07015 * 7 6 5 32 32 H 1.08990 * 108.47852 * 54.29466 * 7 6 5 33 33 H 1.09002 * 109.47087 * 185.81531 * 9 8 7 34 34 H 1.09004 * 109.46892 * 305.80973 * 9 8 7 35 35 H 1.08995 * 109.47568 * 65.81359 * 9 8 7 36 36 H 0.96991 * 120.00024 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5587 1.8677 2.4321 6 6 2.4485 0.7044 3.4216 7 6 3.7919 0.4167 4.0646 8 7 4.7935 -0.0958 3.1379 9 6 4.3228 -1.3214 2.4790 10 6 5.2074 0.9080 2.1487 11 1 6.2129 0.6798 1.7951 12 6 5.1880 2.2767 2.7788 13 1 4.9942 2.3819 3.8360 14 6 5.4177 3.3950 2.0055 15 7 5.4012 4.5895 2.5555 16 14 5.7524 3.2133 0.1768 17 1 4.4693 3.2663 -0.5689 18 1 6.6348 4.3180 -0.2771 19 1 6.4191 1.9109 -0.0774 20 6 4.2392 0.8705 0.9854 21 8 4.5969 0.4248 -0.0844 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0897 26 1 2.6212 1.4026 -0.9314 27 1 1.5875 2.3507 2.3238 28 1 3.2895 2.5903 2.7951 29 1 2.1058 -0.1850 2.8930 30 1 1.7271 0.9611 4.1973 31 1 3.6471 -0.3152 4.8593 32 1 4.1677 1.3390 4.5073 33 1 5.1263 -1.7392 1.8723 34 1 4.0227 -2.0477 3.2343 35 1 3.4705 -1.0869 1.8414 36 1 5.5625 5.3761 2.0115 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220241663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = 22.842928 kcal Electronic energy + Delta-G solvation = -18899.803489 eV Core-core repulsion = 16192.884253 eV Total energy + Delta-G solvation = -2706.919236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24092 -36.69661 -35.56813 -33.15548 -32.73879 -30.75685 -28.92786 -26.57971 -25.06880 -23.76798 -23.08455 -19.87686 -19.45897 -18.37067 -17.53684 -16.16278 -15.59401 -15.39937 -14.79610 -14.53063 -13.85739 -13.56028 -13.11749 -13.04754 -12.74378 -12.59954 -12.30287 -11.86257 -11.60780 -11.38140 -11.12531 -10.99185 -10.85100 -10.66230 -10.55943 -10.19015 -9.72345 -9.54347 -9.26077 -8.85006 -8.65638 -7.87802 -7.44249 -6.33163 -4.31984 2.35076 3.26582 3.33285 3.50859 3.59169 3.94092 4.29972 4.90839 4.95536 5.11541 5.25895 5.50260 5.54005 5.61926 5.75768 5.83697 5.96124 6.02527 6.09414 6.10632 6.29196 6.33033 6.42452 6.49222 6.69658 6.70716 6.76733 6.85501 7.15246 7.22908 7.38504 7.69260 7.94960 8.18545 8.33851 8.65960 9.09821 9.23618 10.73602 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.013984 C = 0.011626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.638664 B = 2001.806342 C = 2407.826742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.133 3.867 4 N -0.591 5.591 5 C 0.085 3.915 6 C -0.161 4.161 7 C 0.051 3.949 8 N -0.515 5.515 9 C 0.018 3.982 10 C 0.172 3.828 11 H 0.076 0.924 12 C -0.527 4.527 13 H 0.103 0.897 14 C 0.086 3.914 15 N -0.879 5.879 16 Si 0.852 3.148 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.246 1.246 20 C 0.487 3.513 21 O -0.575 6.575 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.147 0.853 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -6.206 0.081 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C 0.010 3.990 4 N -0.323 5.323 5 C -0.036 4.036 6 C -0.201 4.201 7 C -0.077 4.077 8 N -0.238 5.238 9 C -0.131 4.131 10 C 0.062 3.938 11 H 0.093 0.907 12 C -0.564 4.564 13 H 0.121 0.879 14 C -0.120 4.120 15 N -0.515 5.515 16 Si 0.679 3.321 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.170 1.170 20 C 0.276 3.724 21 O -0.455 6.455 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.798 -6.334 -0.219 10.049 hybrid contribution -0.799 0.188 -1.665 1.856 sum -8.597 -6.146 -1.884 10.735 Atomic orbital electron populations 1.23725 0.95616 1.01471 1.02763 1.23401 0.95963 0.99455 0.97970 1.20529 0.92237 0.94391 0.91843 1.47835 1.11339 1.61573 1.11547 1.22682 1.01707 0.97616 0.81597 1.22237 0.99383 0.99057 0.99432 1.21759 0.89359 1.01741 0.94822 1.61751 1.38514 1.04821 1.18729 1.22433 0.99234 0.93263 0.98128 1.20368 0.93565 0.93515 0.86389 0.90675 1.20959 1.50529 0.87011 0.97890 0.87930 1.24846 0.93689 0.95211 0.98232 1.69840 1.47270 0.97906 1.36437 0.87246 0.79877 0.79228 0.85766 1.20074 1.21749 1.16955 1.22651 0.82849 0.75035 0.91841 1.90566 1.77391 1.47665 1.29894 0.88699 0.88767 0.87664 0.90789 0.89833 0.92553 0.83622 0.92815 0.91464 0.92846 0.88156 0.91927 0.92325 0.95540 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 14.32 29.01 0.42 -2.12 16 2 C -0.15 -2.34 9.84 -36.03 -0.35 -2.69 16 3 C 0.13 2.43 5.85 -5.19 -0.03 2.40 16 4 N -0.59 -12.24 2.27 -174.42 -0.40 -12.64 16 5 C 0.09 1.62 5.88 -3.57 -0.02 1.60 16 6 C -0.16 -2.68 5.45 -27.34 -0.15 -2.83 16 7 C 0.05 0.93 5.12 -5.11 -0.03 0.90 16 8 N -0.52 -10.50 5.05 -239.10 -1.21 -11.71 16 9 C 0.02 0.33 8.38 60.06 0.50 0.83 16 10 C 0.17 4.08 2.32 -69.69 -0.16 3.92 16 11 H 0.08 1.93 7.60 -51.93 -0.39 1.54 16 12 C -0.53 -13.25 5.51 -34.44 -0.19 -13.44 16 13 H 0.10 2.65 5.45 -52.49 -0.29 2.37 16 14 C 0.09 2.30 4.96 -17.82 -0.09 2.21 16 15 N -0.88 -24.40 13.96 55.43 0.77 -23.63 16 16 Si 0.85 22.05 24.45 -169.99 -4.16 17.89 16 17 H -0.27 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.25 -6.65 5.95 56.52 0.34 -6.31 16 20 C 0.49 11.44 1.27 -11.16 -0.01 11.42 16 21 O -0.58 -14.92 14.63 5.55 0.08 -14.84 16 22 H 0.09 1.11 7.84 -52.49 -0.41 0.70 16 23 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 24 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.07 1.19 7.53 -51.93 -0.39 0.80 16 26 H 0.08 1.69 7.41 -51.93 -0.38 1.30 16 27 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 28 H 0.15 3.25 4.15 -51.93 -0.22 3.04 16 29 H 0.05 0.90 6.46 -51.93 -0.34 0.57 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.97 5.19 -51.93 -0.27 1.70 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 35 H 0.03 0.51 5.18 -51.93 -0.27 0.24 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -29.00 270.99 -6.03 -35.03 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.10 Total: 3.61 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.12 Total: 2.19 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.83 Total: -47.97 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.16 Total: 17.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.00 -6.03 -35.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220241663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.873 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds